Typing tool
|
Complete norovirus genomes
OQ451916 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..4435 ORF2: 4416..6038 ORF3: 6038..6844LOCUS OQ451916 6881 bp RNA linear VRL 22-FEB-2023 DEFINITION Norovirus GII isolate Hu/CHN/2021/GII.P31-GII.4/SJZ8032 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OQ451916 VERSION OQ451916.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 6881) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Molecular epidemiology analysis of symptomatic and asymptomatic norovirus infections in Chinese infants JOURNAL Unpublished REFERENCE 2 (bases 1 to 6881) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Direct Submission JOURNAL Submitted (17-FEB-2023) Institutes of Biomedical Sciences, Fudan University, Dongling Road, Shanghai, Shanghai 200032, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6881 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/CHN/2021/GII.P31-GII.4/SJZ8032" /isolation_source="fecal sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Feb-2022" /note="genotype: GII.4" gene <1..4435 /gene="ORF1" CDS <1..4435 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="WDE42324.1" /translation="RMIQRTTGFFGPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLF TRPIKDIIGKLKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLL GDYELQGPEDLAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEI LKLVMKWFFPKKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDL EEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPG IGKTHLARELAKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDA LRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFL VYAEAPEVEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNRYTPHGKGVMKT LTTGSLIARASGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRV GKQLKDVKTMSDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNN ELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVED TEEVANKDGCLKPKDDEEFVVSSDDIKTEGKKGKNKSGRGQKHTAFSSKGLSDEEYDE YKRIREERNGKYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQR KEERASLGLVTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNF GSGWGFWVSPSLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTG MILEEGAPEGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAK SMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSK GTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVM RDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGH PHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKV KKRLLWGSDLATMVRCARAFGGLMDELKAHCVTLPVRVGINMNEDGPIIFEKHSRYRY HYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISIS EGLPSGVPCTSQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKL DPERLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSI LRQMYWTTGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEG GMDFYVPRQEPMFIWMRFSDLTTWEGDRNLAASFVNEDGVE" mat_peptide <1..325 /gene="ORF1" /product="p48" mat_peptide 326..1423 /gene="ORF1" /product="NTPase" mat_peptide 1424..1960 /gene="ORF1" /product="p22" mat_peptide 1961..2359 /gene="ORF1" /product="VPg" mat_peptide 2360..2902 /gene="ORF1" /product="Pro" mat_peptide 2903..4432 /gene="ORF1" /product="RdRp" gene 4416..6038 /gene="ORF2" CDS 4416..6038 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WDE42325.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6038..6844 /gene="ORF3" CDS 6038..6844 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WDE42326.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFPHDKEMLQAQIEATKRLQQEMMKDKQAMLLEGGFSETDATRGAIN APMTKALDWSGTRYWAPDATTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSKKSS NSSTATSVYSNQTVSTRLGATAGSGTSVSSFPSIARTRSWVEDQSRNLSPFIRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 gagaatgatt cagagaacaa caggcttctt cgggccgtac caggattgga acaggaaacc 61 cctccccact atggatgatt ccaaattaaa gaaggtagcc aatatattct tgtgcacttt 121 gtcttcacta ttcaccagac ccattaagga cataatagga aagttgaaac ctctcaacat 181 ccttaacatt ctggctacat gcgattggac cttcgcaggc atagtggaat ccttaatact 241 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc 301 cttgctaggt gattatgaac tgcaagggcc cgaggacctt gcagtggaac tggtcccaat 361 agtgatgggg gggataggtt tggtgctagg atttaccaaa gagaaaatcg gaaagatgct 421 gtcatccgct gcatccactt taagagcttg taaagacctt ggtgcatacg gactggagat 481 cttaaaattg gtcatgaaat ggttcttccc aaagaaagag gaagcaaatg aactggctat 541 ggtgagatcc atcgaggatg cagtactaga cctcgaggca attgaaaaca accatatgac 601 caccctgctc aaagacaaag acagcttggc aacctacatg agaacccttg accttgagga 661 ggagaaagcc agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa 721 ctctcttctg gcaagaatcg ctgctgcacg ttccctagtg catcgggcga aagaagagct 781 ctccagcagg ccgaggcctg tcgttgtgat gatatcggga agaccaggga tagggaagac 841 tcaccttgct agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt 901 gggccttatc ccacgcaatg gtgtcgacca ctgggacgcg tacaagggcg aaagggttgt 961 cctatgggac gactatggaa tgagcaaccc catccatgat gcccttaggc tgcaggagct 1021 tgctgacact tgccccctca cgctaaattg tgacagaatt gagaacaaag gaaaagtctt 1081 tgatagtgat gccataatta ttactaccaa cctggccaac ccagcaccac tggattatgt 1141 caactttgaa gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt 1201 ggagaaggca aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc 1261 tgacttctca cacataaaac tgtcattggc tccacagggt ggttttgaca agaatcggta 1321 caccccacat ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgggc 1381 atcagggtta ctccatgaga ggctagatga atatgaattg caaggcccag ccctcaccac 1441 tttcaacttt gaccgcaaca agatacttgc ttttagacag cttgctgctg aaaacaagta 1501 tgggctgatg gacacaatga gagttggaaa acagctcaag gatgtcaaga ctatgtcaga 1561 cctcaaacaa gcactcaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg 1621 cacctacaca cttgaggctg atggcaaggg cagcgtgaaa gttgacaaag tgcaaagtgc 1681 cactgtgcag accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat 1741 caggtactat gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc 1801 tgcattcgtc accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc 1861 acaggtggaa gacacagaag aggtggccaa caaagatggt tgcttaaaac ccaaagatga 1921 tgaagagttt gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa 1981 gtccggccgt gggcagaagc acacagcctt ttcaagtaaa gggctcagtg atgaagagta 2041 cgatgagtac aagagaatca gagaagaaag gaatggtaag tactccatag aagagtacct 2101 tcaagacaga gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt 2161 ctgtgaagaa gaagaggcca aaatccgaca gaggattttc agaccaacaa ggaaacaacg 2221 caaagaagag agggcttctc tcggcttggt cacaggatct gaaatcagga agagaaaccc 2281 agaagacttc aaacccaagg gaaagctgtg ggctgatgac gacagaagtg ttgactacaa 2341 tgagaaactc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc 2401 aggctggggc ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca 2461 aggtgcaaag gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga 2521 attctgccga ttgagattcc caaagccaat cagaaccgat gtgacgggca tgattctaga 2581 agaaggcgcg cctgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct 2641 catgcctctg gcagccagga tggggaccca tgcaaccatg aaaattcagg ggcgcacagt 2701 tggagggcaa atgggtatgc tcctaacagg atccaacgcc aagagtatgg acctaggcac 2761 aacaccaggc gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat 2821 tggggtccat acggctgctg cccgtggagg aaacactgtc atatgtgcca cccagggaaa 2881 tgagggagag gccacacttg aaggaggtga cagtaaaggg acatactgtg gcgcgccaat 2941 cttaggccca gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac 3001 aacaccactc ccgcctggca cctacgaacc agcctacctc ggtggcaaag accctagagt 3061 caaaggtggc ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc 3121 cagaggcaaa ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt 3181 ccttgagcaa acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct 3241 tgacaaaacc acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaatgg 3301 ggagtccttc acaggaaagt tggctgacca agcctccaag gccaacctaa tgtttgaaga 3361 gggaaagaac atgactccag tctatacagg tgcacttaaa gatgagttgg taaagaccga 3421 taaagtgtat ggtaaggtca agaagaggct tctatggggt tcagatctgg cgaccatggt 3481 acggtgcgcc cgagcttttg gaggcctcat ggatgaactc aaggcacact gtgtcacact 3541 ccctgtcaga gttggtataa acatgaatga ggatggcccc atcatcttcg agaagcactc 3601 cagatataga tatcattatg atgctgacta ttcccggtgg gactcaacac aacaaaggga 3661 tgtgctggca gcagcactag agatcatggt taagttctct ccagaaccac acctggccca 3721 gatagttgca gaagacctcc tttcccctag cgtgatggat gtgggtgact ttcaaatatc 3781 aataagtgag ggtctcccct ctggggtgcc ttgcacctcc cagtggaatt ccatcgccca 3841 ctggctcctc actctctgtg cgctctctga agtcacggac ctgtcccctg atattattca 3901 ggccaactcc cttttctcct tctatggtga tgatgagatt gtaagcacgg acataaagtt 3961 ggacccagag aggctaacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga 4021 caaaactgaa ggaccccttg ttatctctga agacctggat ggtctgacat tcctccggag 4081 aactgtgacc cgtgacccag ctggctggtt tggaaaattg gaacaaagtt caattcttag 4141 gcaaatgtac tggaccacgg gtcccaacca tgaagaccca tttgaaacaa tgataccaca 4201 ctcccaaaga cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc 4261 attctacagc aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt 4321 ttacgtgccc agacaagagc caatgttcat atggatgaga ttctcagatc tgaccacgtg 4381 ggagggcgat cgcaatcttg ctgccagctt tgtgaatgaa gatggcgtcg agtgacgtca 4441 acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag gtcatggctc 4501 tggagcccgt tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg 4561 acccctggat tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta 4621 gaaacgctcc aggtgaaata ctatggagcg cgcccctggg ccctgatcta aatccctact 4681 tatctcattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtgattc 4741 tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc 4801 caactgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta 4861 ggcaactaga gcctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca 4921 atcaatcaaa tgaccccacc attaagttga tagcaatgtt gtatacacca cttagggcta 4981 ataatgctgg ggatgacgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg 5041 actttgactt catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg 5101 tcccagtttt gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagc 5161 tgttcacggg tcccagcagt gcctttgttg tccaaccaca aaatggtagg tgcacgactg 5221 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag 5281 atgtcaccca tatcacaggt agtcataact atacaatgaa tttggcttct caaaattgga 5341 gcaactacga cccaacagaa gaaatcccag cccctctagg gactccagac tttgtgggga 5401 agattcaagg catgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag 5461 ccacagtgta cactgggagc gccgacttcg ctccaaaact gggtagagtt caatttgaaa 5521 ccgacacaaa caatgatttt gaggctaacc aaaacacaaa gttcacccca gttggtgtca 5581 tccaagatgg tggcaccacc catcgaaatg aacctcaaca gtgggtgctc ccaagttact 5641 caggcaggaa cactcctaat gtgcatctgg cccccgctgt ggctcccact tttccgggtg 5701 agcaactcct cttctttagg tccaccatgc ccggatgcag cgggtacccc aacatggatt 5761 tggattgtct gctcccccag gaatgggtgc agtacttcta ccaggaggca gccccagcac 5821 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat 5881 gtaagcttca taaatcaggc tatgttacag tggctcacac tggccaacat gatttggtta 5941 ttccccccaa tggttatttt agatttgatt cctgggtcaa ccagttttac acgcttgccc 6001 ccatgggaaa tggagcgggg cgtagacgtg cactataatg gctggagctt tctttgctgg 6061 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc 6121 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt 6181 tagcagcaat ctacaacagg cttcctttcc ccatgacaaa gagatgctcc aagcacaaat 6241 tgaggctacc aaaaggttac aacaggaaat gatgaaagat aagcaggcaa tgctcctaga 6301 gggtgggttc tctgagacag atgcaacccg cggggcaatc aacgccccta tgacaaaagc 6361 cttggactgg agcggcacaa ggtactgggc tcctgatgct acgactacaa catacaatgc 6421 aggccgcttt tccacccccc aaccatcagg ggcgctgcca ggaagagcta attttaggga 6481 tgctgtccct gctcggggtt cctctaaaaa gtcttctaac tcttctactg ctacttctgt 6541 gtactcaaat caaactgttt caacgagact tggtgctaca gctggttctg gtaccagtgt 6601 ctcgagcttc ccgtcaattg caaggactag gagctgggtt gaggatcaaa gcaggaattt 6661 gtcccctttc attagggggg cccacaacat atcgtttgtc accccaccat ctagcaggtc 6721 ctctagccaa ggcacagtct caaccgtgcc taaagaaatt ttggactcct ggactggcgc 6781 tttcaacacg cgcaggcagc cactcttcgc tcacattcgc aagcgagggg agtcacgggt 6841 gtaatgtgaa aagacaaaat tgattatctt tccttctttt a //