Typing tool
|
Complete norovirus genomes
OQ451907 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..4435 ORF2: 4416..6038 ORF3: 6038..6844LOCUS OQ451907 6886 bp RNA linear VRL 22-FEB-2023 DEFINITION Norovirus GII isolate Hu/CHN/2021/GII.P31-GII.4/SJZ1016 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OQ451907 VERSION OQ451907.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 6886) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Molecular epidemiology analysis of symptomatic and asymptomatic norovirus infections in Chinese infants JOURNAL Unpublished REFERENCE 2 (bases 1 to 6886) AUTHORS Chen,L.-N., Wang,S.-J., Wang,S.-M., Fu,X.-L., Zheng,W.-J., Hao,Z.-Y., Zhou,H.-S., Zhang,X.-J., Zhao,Y.-L., Qiu,C., Seidlein,Lv., Qiu,T.-Y. and Wang,X.-Y. TITLE Direct Submission JOURNAL Submitted (17-FEB-2023) Institutes of Biomedical Sciences, Fudan University, Dongling Road, Shanghai, Shanghai 200032, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..6886 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="Hu/CHN/2021/GII.P31-GII.4/SJZ1016" /isolation_source="fecal sample" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Feb-2022" /note="genotype: GII.4" gene <1..4435 /gene="ORF1" CDS <1..4435 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="WDE42297.1" /translation="RMIQRTTGLFGPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLF TRPIKDIIGKLKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLL GDYELQGPEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEI LKLVMKWFFPKKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDL EEEKARKLSTKSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPG IGKTHLARELAKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDA LRLQELADTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFL VYAEAPEVEKAKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKRRHTPHGKGVMKT LTTGSLIARASGLLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRV GKQLKDVKTMSDLKQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNN ELAGALHHLRCARIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVED TEEMANKDGCLKPKDDEEFVVSSDDIKTEGKKGKNKSGRRQKHTAFSSKGLSDEEYDE YKRIREERNGKYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQR KEERASLGLVTGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNF GSGWGFWVSPSLFITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTG MILEEGAPEGTVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAK SMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSK GTYCGAPILGPGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVM RDQLKPFTEPRGKPPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGH PHHMRKNDCWNGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKV KKRLLWGSDLATMVRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRY HYDADYSRWDSTQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISIS EGLPSGVPCTSQWNSIAHWLLTLCVLSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKL DPERLTAKLKEYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQGSI LRQMYWTRGPNHEDPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEG GMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..325 /gene="ORF1" /product="p48" mat_peptide 326..1423 /gene="ORF1" /product="NTPase" mat_peptide 1424..1960 /gene="ORF1" /product="p22" mat_peptide 1961..2359 /gene="ORF1" /product="VPg" mat_peptide 2360..2902 /gene="ORF1" /product="Pro" mat_peptide 2903..4432 /gene="ORF1" /product="RdRp" gene 4416..6038 /gene="ORF2" CDS 4416..6038 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="WDE42298.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6038..6844 /gene="ORF3" CDS 6038..6844 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="WDE42299.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHILKRGESRA" ORIGIN 1 gagaatgatt cagagaacaa cagggctctt cgggccgtac caggattgga acaggaaacc 61 cctccccact atggatgact ccaaattaaa gaaggtagcc aacatattct tgtgcacttt 121 gtcttcacta ttcaccaggc ccattaagga cataataggg aagttgaaac ctctcaacat 181 ccttaatatt ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact 241 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc 301 cttgcttggt gattatgaac tgcaaggacc cgaggacctt gcagtggaac tggtcccagt 361 agtgatgggg gggataggtt tggtgctagg atttaccaaa gagaagatcg gtaaaatgtt 421 gtcatccgct gcatccactt taagagcttg caaagacctt ggtgcatacg gactggaaat 481 cttaaaattg gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggccat 541 ggtgagatcc atcgaggatg cagtactaga cctcgaggca attgaaaaca accacatgac 601 caccctgctc aaagacaaag acagcttgac aacctacatg agaacccttg accttgagga 661 ggagaaagcc agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa 721 ctctcttctg gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct 781 ctccagcagg ccgagacctg tcgttgtaat gatatcggga agaccaggga taggaaaaac 841 tcaccttgcc agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt 901 gggccttatc ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagggttgt 961 cctatgggac gactatggaa tgagcaaccc catccatgat gcccttaggt tgcaggagct 1021 tgctgacact tgccccctca cgctaaattg tgacagaatt gagaacaaag gaaaagtctt 1081 tgacagtgat gccataatta tcaccaccaa cctggccaac ccagcaccac tggattatgt 1141 caactttgaa gcgtgttcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt 1201 ggagaaggca aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc 1261 tgacttctca cacataaaac tgtcattggc tccacagggt ggttttgaca agagacggca 1321 caccccgcat ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc 1381 atcagggtta ctccatgaga gactagatga atatgaattg caaggcccag ccctcaccac 1441 tttcaacttt gaccgcaaca agatactcgc ttttagacag cttgctgctg aaaacaagta 1501 tgggctgatg gacacaatga gagtcggaaa acagctcaag gatgtcaaga ctatgtcaga 1561 cctcaaacaa gcactcaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg 1621 cacctacaca cttgaggctg atggcaaggg cagtgtgaaa gttgataaag tgcaaagtgc 1681 cactgtgcag accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat 1741 cagatactat gtaaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc 1801 tgcattcgtc accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc 1861 acaggtggaa gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga 1921 tgaagagttt gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa 1981 gtccggccgg aggcagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta 2041 cgatgagtac aagagaatca gagaagaaag gaatggtaag tattccatag aagagtacct 2101 tcaggacaga gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt 2161 ctgtgaagaa gaagaggcca aaatccggca gaggattttc agaccaacaa ggaaacaacg 2221 caaagaagag agggcttctc tcggcttggt cacaggttct gaaatcagga agagaaaccc 2281 agaagacttc aaacccaagg gaaagctgtg ggctgatgac gacagaagtg ttgactacaa 2341 tgagaaactc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc 2401 aggctggggc ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca 2461 aggtgcaaag gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga 2521 attctgccga ttgagattcc caaagccaat cagaaccgat gtgacgggca tgattctaga 2581 agaaggtgcg cccgagggga ccgtggccac actgcttatc aagagaccaa ctggagagct 2641 catgcctctg gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt 2701 tggagggcaa atgggcatgc tcctgacagg atctaacgcc aagagtatgg acctaggcac 2761 aacaccaggc gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat 2821 aggggtccat acggctgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag 2881 tgagggagag gccacacttg aaggaggtga cagtaaaggg acatactgtg gcgcgccaat 2941 cttgggccca gggagcgctc cgaagctcag cactaagact aagttttgga gatcatccac 3001 aacaccactc ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt 3061 caaaggtggc ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc 3121 cagaggcaaa ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt 3181 ccttgagcaa acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct 3241 tgacaaaacc acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaatgg 3301 ggagtccttc acaggaaagt tggctgacca agcctccaag gccaacctaa tgtttgaaga 3361 gggaaagaac atgactccag tctatacagg tgcacttaaa gatgagttgg taaagaccga 3421 taaagtgtat ggtaaggtca agaagaggct tctatggggt tcagatctgg cgaccatggt 3481 acggtgcgcc cgagcttttg gaggcctcat ggatgaactc aaggcacact gtgtcacact 3541 ccctgtcaga gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc 3601 cagatataga tatcattatg atgctgacta ttcccggtgg gactcaacac aacaaaggga 3661 tgtgctggca gcagcactag agatcatggt taagttctct ccagaaccac acctggccca 3721 gatagttgca gaagacctcc tttcccctag cgtgatggat gtgggtgact ttcaaatatc 3781 aataagtgag ggtctcccct ctggggtgcc ttgcacctcc cagtggaatt ccatcgccca 3841 ctggctcctc actctctgtg tgctctctga agtcacggac ctgtcccctg atatcattca 3901 ggccaactcc cttttctcct tctatggtga tgatgagata gtaagcacag atataaagtt 3961 ggacccagag aggctaacag caaagctcaa ggagtatggg ctaaaaccaa cccgccccga 4021 caaaactgag ggaccccttg tcatctctga agacctggat ggtctgacat tcctccgaag 4081 aactgtgacc cgtgatccag ctggctggtt tggaaaactg gaacaaggtt caattcttag 4141 gcaaatgtac tggaccaggg gccccaacca tgaagaccca tttgaaacaa tgataccaca 4201 ctcccaaaga cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc 4261 attctacagc aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt 4321 ttacgtgccc agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg 4381 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgtca 4441 acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc 4501 tggagcccgt tgttggtgcc gccattgcgg cacctgtagc gggccaacaa aatgtaattg 4561 acccctggat tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta 4621 gaaacgctcc aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctact 4681 tgtctcattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaatcc 4741 tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaatttcc 4801 caactgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta 4861 ggcaactaga acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca 4921 atcaatcaaa tgaccccacc attaagttga tagcaatgtt gtatacacca cttagggcta 4981 ataatgctgg ggatgatgtc ttcacagttt cttgtcgagt tctcacgaga ccatcccccg 5041 attttgactt catatttcta gtgccaccca cagttgagtc aaggactaaa ccattctctg 5101 tcccagtttt gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt 5161 tgttcacggg tcccagcagt gcctttgttg ttcaaccaca aaatggtaga tgcacgactg 5221 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc ttcagaggag 5281 atgtcaccca tatcacaggt agtcataact atacaatgaa tttggcttct caaaattgga 5341 gcaactacga cccaacagaa gaaataccag cccctctagg gactccagac tttgtgggga 5401 agatacaagg catgctcacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag 5461 ccacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa 5521 ctgacacaaa caatgatttt gaggccaacc aaaacacaaa gttcacccca gttggtgtca 5581 tccaagatgg tggcaccact catcgaaatg aaccccaaca gtgggtgctc ccaagttact 5641 caggcaggaa cactcctaat gtgcatctgg cccccgctgt ggcccccact tttccgggtg 5701 agcaactcct tttctttaga tccaccatgc ccggttgcag cgggtacccc aacatggatt 5761 tggattgtct gctcccccag gaatgggtac agtacttcta ccaggaggca gccccagcac 5821 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat 5881 gtaagcttca taaatcaggc tatgtcacag tggctcacac tggccaacat gatttggtta 5941 tcccccccaa tggttatttt aggtttgatt cctgggtcaa ccagttttac acacttgccc 6001 ccatgggaaa tggagcgggg cgtagacgtg cactataatg gctggagctt tctttgctgg 6061 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc 6121 catcaaccaa aaagttgagt ttgaaaataa tagaaaattg cagcaagcat ccttccaatt 6181 tagcagcaat ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat 6241 tgaggctacc aaaaggttac aacaggaaat gatgaaagtt aagcaggcaa tgctcctaga 6301 gggtgggttc tctgagacag atgcagcccg cggggcaatc aacgccccta tgacaaaagc 6361 cttggactgg agcgggacaa ggtactgggc tcctgatgct aggactacaa catacaatgc 6421 aggccgcttt tccacccccc aaccatcggg ggcgctgcca ggaagagcta attttaggga 6481 tgctgtccct gctcggggct cctctagtaa gtcttctaat tcttctactg ctacttctgt 6541 gtattcaaat caaacaactt caacgagact tggttctaca gctggttctg gtaccagtgt 6601 ctcgagcttc ccgtcaactg caaggactag gagctgggtt gaggaccaaa gtaggaactt 6661 gtcacctttc atgagggggg cccacaacat atcgtttgtc accccaccat ctagcaggtc 6721 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc 6781 tttcaacacg cgcaggcagc cactcttcgc tcacattctt aagcgagggg agtcacgggc 6841 gtaatgtgaa aaggcaaaat tgattatctt tcttttttgc agcaat //