Typing tool
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Typing tool
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Complete norovirus genomes
| OQ190312 | GII.3 | |
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| GII.P25 |
ORF1: 1..5128
ORF2: 5109..6755
ORF3: 6755..7519
LOCUS OQ190312 7571 bp RNA linear VRL 29-FEB-2024
DEFINITION Norovirus GII isolate DDC1 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OQ190312
VERSION OQ190312.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7571)
AUTHORS Okada,K.
TITLE Direct Submission
JOURNAL Submitted (05-JAN-2023) Thailand-Japan Research Collaboration
Center of Emerging and Re-emerging Infections, Osaka University,
Department of National Institute of Health, Ministry of Public
Health, Muang, Nonthaburi 11000, Thailand
COMMENT ##Assembly-Data-START##
Assembly Method :: Spades v. 3.15.3
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7571
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="DDC1"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Thailand"
/collection_date="29-Dec-2021"
/note="genotype: GII.3"
gene <1..5128
/gene="ORF1"
CDS <1..5128
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="WBK39305.1"
/translation="ASNDAATATAGKTSTNSEIHNQDVNTTSSLFANMTVGLKRALGA
RPKQSAPRAPSPNREGKSETTTRTPPLNKGGRDNTPQIPPPPPNGEDIIIKYTKQDDV
IAGVPTVATVDVPPTHNTAYSVPPLDQREKVEAKEPLTGSIIEMWDGEIFHYGLYVEK
GLVLGVHKPPAAISFARIELTPLSLYWRTVYTPPYLVAPETLRRLHGESFPYNAFDNN
CYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLLCGL
SGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGVVEALILLAELFGVFWTPPDISTFI
ASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREIGNY
GIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLATFLR
ELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVIMIS
GRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGMSNP
VTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRR
IDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKG
VMKSLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDQNRVAAFRKLAADNKYGLVE
TIKVGNKLKSVRTLEQLKDALKDISIKPCRIIYNSMAYDLDSNGSGRVNVKKVVDHKV
QTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRLNVSGIWARP
EKQVEAIEEPPAPPSEEWTITPSDAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEF
KRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRVFRPTRKQRR
EERATLGLVTGSEIRKRNPDDFKPKGKLWADDDRSVNYNEKIDFEAPPSLWSRIVNFG
SGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQIHRSGEFCKMRFPKAIRPDVSGM
ILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSNAKN
MDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGDNHG
TYCGAPILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVRGGPSLQQVMR
DQLKPFTAPRGKPPRPAILEAAKETICNVLEQVIEPPQKWSYAQACASLDKTTSSGHP
HHMKKNDNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYENIK
KRLLWGSDLGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKYKYH
YDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKITINE
GLPSGVPCTSQWNSISHWLITLCAISEVSGLSPDVVQTNSCFSFYGDDEIVSTDIKLD
PMKLTNKLKEYGLIPTRPDKTEGPLIIKESLEGLTFLRRDVCRDPAGWYGKLDQSSIM
RQLYWTKGTNHDDPNETMIPHSQRPIQLMSLLGEAALHGPTFYKKVSKLVITELKEGG
MDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..1033
/gene="ORF1"
/product="p48"
mat_peptide 1034..2131
/gene="ORF1"
/product="NTPase"
mat_peptide 2132..2668
/gene="ORF1"
/product="p22"
mat_peptide 2669..3052
/gene="ORF1"
/product="VPg"
mat_peptide 3053..3595
/gene="ORF1"
/product="Pro"
mat_peptide 3596..5125
/gene="ORF1"
/product="RdRp"
gene 5109..6755
/gene="ORF2"
CDS 5109..6755
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="WBK39306.1"
/translation="MKMASNDAAPSSDGAAGLVPEINNEAMALEPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLSRMYNGYAGG
FEVQVVLAGNAFTAGKVIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPINLPMPD
VRNNFFHYNQGSDSRLRLIAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTDNVIVQCQNGRVTLDGELMGTT
QLLPSQICAFRGTLTTSTNRDRDQPDAAAPRVFDHRWHIQLDNLNGTPYDPAEDIPAP
LGTPDFQGKVFGVASQRNPDGTTRAHEAKVDTTSGRFTPKLGSLEIITESGDFNPSMP
TKFTPVGVGVDTDEEFQQWILPRYSGQVTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GTSSGTLDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFITIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRIQ"
gene 6755..7519
/gene="ORF3"
CDS 6755..7519
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="WBK39307.1"
/translation="MAGAFVAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPADAARGAINAPVTKVLDWSG
TRYWAPNATSTTSMSGGFTSQVVHRTTPNFKVDQTPKPAPSSGSSVRSNSTQLTSLSS
HSSGSSRSSGSTVISSLPSSSRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTVSSSD
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNA"
ORIGIN
1 ggcgtctaac gacgctgcca ctgcgaccgc tggcaaaacc agcacaaaca gtgaaattca
61 caaccaagat gtaaacacta catcaagcct cttcgccaac atgaccgttg gcttgaagag
121 ggctctgggg gcgaggccaa aacagtctgc ccccagggct ccctccccca atagggaggg
181 gaagtctgaa accaccacta ggaccccccc cctaaacaag ggaggaaggg acaacacccc
241 ccaaataccc cccccgccac ccaatggtga ggacataatc atcaaataca ccaaacagga
301 tgatgtgatt gcaggggtgc ccactgtcgc tacggtggac gtccccccta cacataacac
361 cgcctacagt gtccctccct tggatcagag ggagaaggtt gaggcaaagg aacccctgac
421 aggctcaata attgagatgt gggatggtga aattttccat tatgggctct atgttgagaa
481 gggcttggtt cttggagtgc acaaaccccc ggctgccata agcttcgcgc gcatagagct
541 cacccccctc tctttatact ggagaacagt ctacacacca ccttatctag tagccccaga
601 aacacttagg agactccacg gggagtcgtt cccatacaat gcatttgaca ataattgcta
661 ctccttctgc tgttgggtct tggacctgaa tgattcctgg cttaacagaa agtttgtttc
721 gagaactaca ggtttctaca gaccctacca agagtggaac agaaagcccc tgccgaccat
781 ggatgaggga aaactcaaga aagtggccaa tgtgctactg tgtggtctct ccggtctttt
841 caccagacca atcaaggacc tcatagggaa actaagacca ttgaacattc tcaatatcat
901 caccaattgt gattggactt tccctggagt tgtggaagct ctcatattac ttgcagaact
961 cttcggagtc ttctggacac caccagacat ttccactttt atagcatcac ttctgggtga
1021 ttatgaaatg cagggccccg aggacattgc agttgaagtt gtgccagtaa ttctcggtgg
1081 cataggcatg gtgcttgggt tcaccaaaga gagaatcggc cggttgctga gctctgccgc
1141 ttcttcgctt agggcgtgca gagagatcgg caattacgga atagaagtgg taaagttggt
1201 gatgaaatgg tttttcccca ccaaagatga gacaaatgag atggacatgg tgagggcaat
1261 agaggatgcc gtgctcgact ttgaggccat acaaaacaac cacatgacag cattactcaa
1321 ggacaaaaat agcctagcaa ccttccttag ggagttagac atggaagagg agaaagcgcg
1381 gaagttatca acaaagtccg cgtccccaga catcattggc accataaacg ccctcctagc
1441 caggattgcc gccgctaggt ccctagtcca caaggccaaa gaagaaatgt catctaggat
1501 gcgtcctgtt gtcattatga tctctggccg acctgggata ggaaagacac atctagcccg
1561 cgacctggcc aaaaagatgg cggcaaccct ctcaggtgac cagagggtag ggctcgtgcc
1621 aaggaacggt gtcgatcatt gggacgcata caaaggggag agaattgtac tctgggatga
1681 ctatggaatg agcaaccctg tgaccgacgc gctgcggctc caagaacttg ccgacacatg
1741 ccccttgacg ctcaattgtg ataggataga gaacaagggg aaggtctttg atagtgacac
1801 tataattatc accaccaatt tggccaatcc cgcccctcta gattatgtta attttgaagc
1861 ttgctctcgc cggattgatt tccttgtcta tgcggactcc ccctcggttg ataaggcgaa
1921 gagagacttc cccggccaac cagatatgtg gaaggacgct tttaaaccag acttttccca
1981 cataaaactc caactggcac cacaaggggg ctttgataaa aacggaaaca ccccccatgg
2041 gaagggtgtc atgaaatcac tgaccacaca ttcccttatt gcccgtgcca cgggtctgtt
2101 gcatgagagg ttggatgagt tcgacctaca ggggcctgaa ctacctgtgt acaattttga
2161 tcaaaacagg gtggccgctt ttagaaagct tgcagctgac aacaagtacg ggctcgtgga
2221 aaccataaaa gtgggcaaca aactgaagag tgtcaggact ctagaacaac ttaaggatgc
2281 cttgaaagac ataagtatca agccttgcag aataatctac aactccatgg cttatgatct
2341 cgactcgaat gggtcaggaa gggttaacgt caaaaaggtt gtggatcata aagtccaaac
2401 taacaatgaa ctcaactccg cgcttaacaa cctgcgtggc gccagggtaa gatactatgt
2461 caagtgtgtt caagagatgg tgtactctct cctccagatc gctggcgcgg ccttcgtcac
2521 ttcaagaatg acgcgaagat taaacgtcag tggtatctgg gccaggccag aaaaacaggt
2581 ggaggccatt gaagaacccc cagccccccc atctgaagaa tggactataa ccccatcaga
2641 tgcagtccaa gagggcaaga agggcaagaa caaaagtggc agaggtaaga aacacactgc
2701 cttctccagc aaaggcctga gcgatgagga gtatgatgaa tttaaaagaa tcagggaaga
2761 gaggcaggga aaatattcca tagaagaata cctccaggac agagaccggt actatgagga
2821 attggccata gccaaagcta cagaagaaaa cttctgtgag gaggaagaaa taaagatcag
2881 acagagggtc ttccgcccaa ccagaaaaca acgcagggaa gaaagggcga ccctaggact
2941 ggtcacgggt agtgaaatca ggaaaaggaa cccagatgac ttcaaaccaa aaggaaaatt
3001 gtgggctgat gatgaccgca gtgtaaacta caatgagaaa atagatttcg aggcccctcc
3061 tagcctttgg tcccgaatag tgaattttgg gtcaggatgg ggtttctggg tgtcttctaa
3121 cctattgatc acatcaacac atgtcatccc cccgaacatg actgaggctt tcggtgtacc
3181 aataagccag atacaaatac acagaagtgg agagttctgc aaaatgaggt tccccaaggc
3241 tataagacct gacgtctcgg gcatgatcct agaggaagga gcacctgaag gaacggtggt
3301 gaccatactg attaagagaa ccaccggtga gctcatgcca ttggctgccc gaatgggcac
3361 ccacgccacc atgaagatac aagggaaaat gcttggaggt caaatgggaa tgctcctcac
3421 ggggtccaac gccaagaata tggacctcgg caccattcct ggagactgtg gttgccccta
3481 tgtgtacaag agaggtaatg attgggtggt cataggagtg cacaccgcag ctgccagagg
3541 tggcaacact gtgatctgcg ccacccaggg gccagatggt gaggccacac tcgagggagg
3601 agacaatcac gggacctact gtggtgcacc aatacttggg ccaggaaatg caccaaagct
3661 cagcaccaaa accaagtttt ggaggtcatc caacgcccca ctcccgcctg gcacttatga
3721 gcccgcttac ctaggaggaa aggatccaag ggtcagaggg ggtccgtcat tacaacaggt
3781 tatgagggat caactcaaac ccttcaccgc cccccgaggg aaaccaccgc gaccagcgat
3841 tttagaggca gccaaagaga ccatctgcaa tgtgcttgag caagtcattg aaccacccca
3901 aaaatggtct tatgctcagg cctgtgcttc attggataag acaacatcta gtggtcatcc
3961 ccaccacatg aaaaagaatg acaattggaa cggagagtct ttcactggtg tattggctga
4021 tcaggcctct aaggccaatc tcatgtttga acagggaaaa cacatgcaac ccgtgtacac
4081 tgctgctctc aaagatgagc tcgtcaagac tagtaagatc tatgaaaaca ttaagaaaag
4141 acttctgtgg ggatcagatc tgggcacaat gatccgttgt gctagggcat tcggtggcct
4201 tatggatgag atgaaggcaa attgtgtgaa tttaccaatt agagttggca tgaacatgaa
4261 tgaagatgga cccatcatat ttgagaaaca ttcaaaatat aaatatcatt atgatgctga
4321 ctattccagg tgggactcaa cccaacagag gcacatcctt ggagctgccc ttgaaataat
4381 ggttaggttt tcagctgaac ctgaattagc acaaatagtg tctgaagatc tcctagcccc
4441 cagtgtggtg gacgttggcg acttcaaaat caccataaat gaagggttgc cctctggagt
4501 gccgtgtaca tcacagtgga actcaatttc ccactggctc ataacactgt gtgccatatc
4561 agaagtatca gggctatcgc cagacgtggt gcaaacaaac tcctgcttct ccttctacgg
4621 ggatgatgag atagtcagca ccgacatcaa gttagatccc atgaagctga ccaacaagtt
4681 gaaagagtat gggttgattc caacgaggcc agacaagacc gagggaccgc tcataattaa
4741 agagagtctt gagggcctaa ctttcctgag gagggacgtg tgtcgagacc cagctggttg
4801 gtatggaaaa cttgaccaat cctcaatcat gagacaactg tattggacta agggaaccaa
4861 ccatgatgat cccaatgaga caatgattcc acactctcag agacccatac aattaatgtc
4921 actgctaggg gaggcagcac tgcatggtcc aactttttac aagaaagtca gcaaattggt
4981 catcactgag ctcaaagaag gtgggatgga tttctatgtg ccaagacagg aacctatgtt
5041 cagatggatg agattctcgg atctcagtac ttgggagggc gatcgcaatc ttgctcccga
5101 aggtgtgaat gaagatggcg tcgaatgacg ctgctccatc tagtgatggt gccgccggcc
5161 tcgtcccaga gatcaacaat gaggcaatgg cgctagaacc agtggcgggc gcagcaatag
5221 cagcacccct cactggtcag caaaatataa ttgatccctg gattatgaac aattttgtgc
5281 aagcacctgg tggtgagttt acagtgtccc ccagaaattc ccctggtgaa gtgttactta
5341 atttggaatt aggcccagaa ataaatcctt acctggccca cctttccaga atgtataatg
5401 gctatgcagg cgggtttgaa gtgcaggtgg tcctagctgg aaatgcattc acagcaggaa
5461 aggtaatctt tgcagccata ccccccaatt ttcctattga taatctgagt gcagcacaga
5521 tcacaatgtg cccgcatgtg attgtggatg ttaggcagtt agaaccaatc aacctcccaa
5581 tgcctgatgt tcgcaataat ttctttcatt ataatcaagg gtctgattca agattacgct
5641 tgatcgcaat gctgtataca cctcttagag caaataattc tggtgatgat gttttcactg
5701 tgtcttgtag agttttaacc aggcctagtc ctgatttctc tttcaatttt cttgtaccac
5761 ctactgtaga atcaaagaca aaacctttca cccttcctat tctgaccatc tcggagatgt
5821 ccaattctag gtttccagtg ccaattgatt ctctacacac cagcccaacc gacaatgtta
5881 ttgtccaatg tcaaaatggg cgcgtcactc tcgatggcga gctaatgggt accactcaac
5941 tattaccaag ccaaatatgt gcattcaggg gcacgctcac aacatcaaca aatagggaca
6001 gggaccaacc tgatgcagca gcccccaggg tattcgacca tcgttggcat attcaattgg
6061 ataacctgaa tggcacccct tatgatcctg cagaggacat accagctccc ttgggtacgc
6121 cagattttca gggtaaggtc tttggtgtgg ctagccagag gaaccccgat ggcacaacaa
6181 gagcacatga ggcaaaagtg gacacaacat ctggccgctt tactccaaag ttgggttccc
6241 tagaaataat cactgaatct ggtgacttta atccaagtat gccaacaaaa ttcaccccag
6301 ttggtgttgg agttgacact gatgaagaat tccaacagtg gatattacct agatattctg
6361 gccaggtcac ccacaatatg aatttggccc cagctgttgc ccccaacttc cctggtgagc
6421 agcttctttt cttccgctca cagctaccat cttctggtgg gacgtccagc gggactttgg
6481 actgtttggt cccccaggag tgggttcagc atttctacca ggaatcagcc cctgcccaga
6541 cacaggtggc cctggttaga tatgtcaacc ctgacactgg tagggtgttg tttgaggcca
6601 aacttcataa attgggtttt ataactatag caaagaatgg tgactctcca ataactgtcc
6661 ccccaaatgg gtattttaga tttgaatctt gggtgaaccc cttttataca cttgccccca
6721 tgggaactgg caacgggcgc agaaggattc aataatggca ggagcatttg tggcaggatt
6781 ggctggtgat atactcacaa acactgtggg atctttggtg aatgcagggg ctaatgctat
6841 taatcagaag gttgattttg agaataataa atatttgcaa aatgcatcat ttaatcatga
6901 taaggagatg ttgaatgcac aaattgaggc aacaaaaagg ctgcaggctg atatgattgc
6961 tatcaaacaa ggggtcttga ccgctggcgg cttttcccct gctgatgcag cccgtggggc
7021 aatcaatgct ccagtgacaa aagtcctgga ctggagtgga acaaggtact gggcaccaaa
7081 cgccacctcc acaacttcaa tgtcaggtgg ctttacaagc caagttgtgc acaggactac
7141 accaaatttc aaagtggacc agactcccaa gcccgcaccc agcagcgggt cttcagtgag
7201 atcaaactca acacagctca ctagtctgag ctcacactca tctgggtcat ctcgatccag
7261 tgggtccacg gttatcagct cactaccatc ttccagcagg accagagatt gggtcaatca
7321 acaaaatttc aatttggaac cacacatgcc tgggtctctt aggacagctt ttgtcactcc
7381 accatccagc acagtttcca gttcagacac ggtctcaacc gtgcctaaaa gtgttttgga
7441 ctcctggaca tctgcgttta acacacgcag acagccgctg tttgcacacc ttcgtagaag
7501 gggggagtca aatgcttagt gaaaagatta tctttgaatt taatttagat tagatttgat
7561 ttggccgggc g
//