Typing tool
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Typing tool
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Complete norovirus genomes
| OP901693 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS OP901693 7586 bp RNA linear VRL 03-DEC-2022
DEFINITION Norovirus GII isolate GII/Hu/RU/2022/GII.3[P12]/Nizhny_Novgorod589,
complete genome.
ACCESSION OP901693
VERSION OP901693.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7586)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Whole genome sequencing of noroviruses, detected in Nizhny
Novgorod, Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7586)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (27-NOV-2022) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: Unipro UGENE v. v. 42.0; SPAdes v. v. v.
3.11.1.
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7586
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2022/GII.3[P12]/Nizhny_Novgorod589"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Russia: Nizhny_Novgorod"
/collection_date="04-Mar-2022"
/note="genotype: GII.3[P12]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UZX45709.1"
/translation="MKMASNDASAAAAANSNNDNAKSSSDGMLSSMAVTFKRALGARQ
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
ARKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTIICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6731
/gene="ORF2"
CDS 5085..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UZX45710.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVSLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6731..7495
/gene="ORF3"
CDS 6731..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UZX45711.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGASAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKINQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHLPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaata gcaacaacga
61 caacgcaaaa tcttcaagtg acggaatgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcaaaaac agcctccccc gagggaaata ccacagaggc ctccacggcc
181 acccacccca gaactggtca aaaagatccc tcctccccca cccaatgggg aggatgagct
241 agtggtctct tataacgcca aagatggcgt ctctggtttg cctgaactta ccactgtctg
301 gcaaccggat gagaccaaca cggcattcag tgttccccct ctcaaccaga gggagaacag
361 ggatgccaag gagccgctga ccggaacaat tctggaaatg tgggacgggg agatctatca
421 ttatggtctg tatgtggagc gaggtcttgt acttggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaat tggcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgtagg agaatgatcc agagaacaac tggcttcttc aggccttacc aagaatggaa
721 caggaaaccc ctccccacca tggatgactc taaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagat ataataggaa aggtaagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggaact
1021 cgtaccagta gtgatggggg ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcatctgctg cttccacctt aagagcttgt aaagaccttg gtgcatacgg
1141 gctggaaatc ctaaaactgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
1201 gctagctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga gaacccttga
1321 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1381 cacaatcaat gctcttctgg cgagaatcgc cgctgcacgt tcactggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcca gggagctagc caggaagatc gcagcttcac tcacagggga
1561 ccaacgcgtg ggcctcatcc ctcgcaatgg cgttgaccac tgggatgcat acaagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgacg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccaccaat ctagccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac tttctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccccagggtg gtttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccacgagag gttggatgaa tacgagctgc agggcccaac
2101 tcccaccacc tttaactttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtat ggattgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatt aagagttgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaaaag ttgacagagt
2341 gcagaacgcc actgtacaga ccaacaatga gcttgccggc gcactacacc atctcaggtg
2401 cgccagaatc aggtattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 cgctggggct gcattcgtca ccacgcgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caagtggagg acacagagga aatcgctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagtttg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcattt tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaattag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaggtatta tgaggaggtg gccatcgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa gattcgacag aggatcttca ggccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgtacccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaagggac cgtggtcaca ttactcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccagaat gggaacccac gcaaccatga agatacaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctaactggg tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3481 cgtggtcatt ggggtccata cagctgccgc ccgtggagga aacactatca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agtaagggga cctactgcgg
3601 cgcaccaatc ttaggtccag gaagtgcccc aaaactcagc accaaaacca aattctggag
3661 gtcatccacg gcaccactcc cacctggtac ctatgaacca gcttacctcg gtggcaagga
3721 ccccagagtt aagggtggcc cttcactgca acaagttatg agggatcaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3841 cgtcaatgtc ctagaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatcccta gacaagacca cttctagcgg tcatccgcac cacatgcgga agaatgactg
3961 ctggaacggg gagtccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag gggaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aagatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gagcattcgg gggtctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4321 acaaagagct gtgttggcag cagccttaga aatcatggtc aagttttccc cagagccaca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg taggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actctccgag gttacaaacc tgtcccctga
4561 cattattcag gctaactctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aaaactgaag ggcctcttgt catttccgaa gacctgaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagttc
4801 aatactcaga caaatgtact ggactagagg ccccaaccat gaagacccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagca ttctacagca aaatcagtaa actggtcatt gcagaattga aggagggtgg
4981 catggatttt tacgtgccaa gacaagaacc aatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac cccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcacc ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag gaattcccct ggtgaagtgc tcctcaattt ggaattgggc ccagagataa
5341 acccctatct ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct ggctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaacttccc aattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagctggaa ccggtcagcc tcccgatgcc tgacgttcgc aataacttct
5581 ttcactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tacacacctc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgcagagtg ctgactagac
5701 ctagtcctga attttcattt aacttccttg tgccacccac tgtggagtca aagacaaaac
5761 cttttactct cccaattctg actatctctg aaatgtctaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgtcaa aatggacgcg
5881 tcactcttga tggcgagttg atgggcacca ctcagctttt acccagtcaa atctgtgctt
5941 tcaggggcgt gctcactaga tcaacaagca gggctagtga ccaggccgac acagcaaccc
6001 ctagattgtt taattattat tggcacatac aattggataa tctaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctag ggacaccaga tttccggggc aaagtctttg
6121 gcgtggccag ccaaagaaac cccgacagta caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gctcgttaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccacgagg
6301 cagacttcca acaatggtcc ttacccgatt actctggcca gttcactcac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gcgagcagct cctcttcttc cgctcacagt
6421 taccatcttc tggtgggcga tccaatggga ttctagattg cctggtcccc caagaatggg
6481 tccagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctctg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggtg cttttatagc aggattagct ggtgatatac tcacaaatac
6781 tgtagggtct ctagttaatg caggggctag tgctatcaat caaaaagttg attttgaaaa
6841 taataaatac ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacagat
6901 tgaggcaaca aagagattac aggctgatat gattgctatt aaacaggggg ttttgaccgc
6961 tggcggcttt tcccccactg atgcagctcg cggggcaatc aacgccccca tgacaaaggt
7021 cctagattgg aatggaacaa ggtactgggc accaagtgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa ttaaccaggc
7141 ccccagatcc acacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7201 tctgagctca cactcgtccg ggtcgtctcg atccagcggg tctacagttg ctagctcgtt
7261 accatcctct aacaggacta gggactgggt caatcagcaa aatttcaatt tggaaccgca
7321 cttgcctggg tcacttagga cggcttttgt cactccacca tctagtacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacag ccgctattcg cacaccttcg tagaaggggg gagtcaaatg tttagtgaaa
7501 aggttatttt aaatttgatt taaattgaat ttgatttgga atcttttaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaa
//