Typing tool
|
Complete norovirus genomes
OP901692 | GII.6 | ||
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GII.P7 |
ORF1: 5..5098 ORF2: 5079..6722 ORF3: 6722..7498LOCUS OP901692 7587 bp RNA linear VRL 03-DEC-2022 DEFINITION Norovirus GII isolate GII/Hu/RU/2022/GII.6[P7]/Nizhny_Novgorod496, complete genome. ACCESSION OP901692 VERSION OP901692.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7587) AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and Novikova,N.A. TITLE Whole genome sequencing of noroviruses, detected in Nizhny Novgorod, Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 7587) AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and Novikova,N.A. TITLE Direct Submission JOURNAL Submitted (27-NOV-2022) Laboratory of Molecular Epidemiology of Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny Novgorod 603950, Russia COMMENT ##Assembly-Data-START## Assembly Method :: Unipro UGENE v. v. 42.0; SPAdes v. v. v. 3.11.1. Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7587 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/RU/2022/GII.6[P7]/Nizhny_Novgorod496" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Russia: Nizhny_Novgorod" /collection_date="23-Feb-2022" /note="genotype: GII.6[P7]" gene 5..5098 /gene="ORF1" CDS 5..5098 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UZX45706.1" /translation="MKMASNDASAAFGSQNSVNDSNNTAPSSKEEAGAFSNIKVGFKK MLGAVPKGTKAPSSDQHCPSVKIGAKTLTVPPEPPNGEDTVQFDAKSETVRGLPDLTT VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE LNDTWLSRKSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRTRPVVVMISGRPGIGKTHM ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP EIEKVKRDFPGQPDMWKDHFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS VKTLEDLKVALRDVKFNECEIIYRSSKYRVSSNGKGSVSVDKVEDQTSQTANEVGAAL LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG SDIRKRRPDDFQPRGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGIDGEAVLEGNESHGTYCGAPILGPG KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM FRWMRFSDLSTWEGDRNLAPEGVNEDGVE" mat_peptide 5..1006 /gene="ORF1" /product="p48" mat_peptide 1007..2104 /gene="ORF1" /product="NTPase" mat_peptide 2105..2623 /gene="ORF1" /product="p22" mat_peptide 2624..3022 /gene="ORF1" /product="VPg" mat_peptide 3023..3565 /gene="ORF1" /product="Pro" mat_peptide 3566..5095 /gene="ORF1" /product="RdRp" gene 5079..6722 /gene="ORF2" CDS 5079..6722 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UZX45707.1" /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ LVPTQISSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG AIDFKGTVFGVASQRNTTGNSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESADFDDG QPTRFTPIGMGADDWRQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ" gene 6722..7498 /gene="ORF3" CDS 6722..7498 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UZX45708.1" /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA SFKHDKEMLQSQVLATKQLQQEMVNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG TRYFAPNSMKTTSYSGQFSSNPVHRQPTLTRSESPKIKVNSDSASVYSSATTIPSQST HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHIRRRGESQI" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccttt ggcagccaaa actctgtcaa 61 tgacagtaac aacaccgccc cttctagtaa agaagaggct ggtgcattct ccaacattaa 121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagcagtga 181 tcagcactgc ccctcagtca agatcggggc caagacatta acagttcccc ctgaaccccc 241 aaacggtgaa gacaccgtgc agtttgatgc gaagtcagaa actgtgcgcg ggctaccaga 301 cttgacaacg gtgcagaatg aacatgaaaa cacaccatac actgtccccc cattgagtga 361 aagggagcac agaccagcca ctgaaccgct tcctggcaca atactcgaga tgtgggatgg 421 tgaattctac cactactctg tgtacgtcag cggtggcaaa gccctagggg tccacaagcc 481 ccctgcagcg ataagcctcg cgacaataga gctcacaccc atatctctct attggaggcc 541 cgtttacacc cccaactatc tggtctgtcc agacacgttg aagggccttg ctggtgagaa 601 gttcccctat acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct 661 caatgacacg tggcttagca ggaaaagcat ctctaggacc accggtttct tcaaaccata 721 ccagtcttgg aataggaaac cccttccaac cgttgatgat ggaaagatca aaaaggtggc 781 caacgcaatt ctctgcgcgc ttggatcact gttttcaaaa ccaattaagg acctattggg 841 caaacttaaa ccattgaact tgctacactt gctcgcatca tgtgactgga cgtttgcagg 901 tatagtagag acagtcatcc taatggcgga acttttcaac atcttctgga caccgccaga 961 tgtttccagc ttcatagcct ctctgatagg tgattttgaa ctgcaaggac ctgaggacct 1021 tgctgtggag cttgtccccg tggtcatggg tggcatagga atggttctcg gcttcactgc 1081 tgagaagata ggccgcatgc tatcgtccgc tgcatcaaca ctacgggcat gcaaagactt 1141 ggggaattat gctcttgaca tactgaaact ggttatgaag tggttcttcc caaagaaaga 1201 agagaaagcc gagatggaaa ccctaagggc gattgaggat gccgtcctgg acatggaagc 1261 tataggaaat aaccacctca caaccctcct caaggacaag gatagcctca cggctttcat 1321 gaagactcta gatctagaag aggagaaggc aaggaggctg tccaccaaat catcctcgcc 1381 agacatcgtc ggcactatta atgccatact ggccagaata gctgctgcca ggtccctctt 1441 acataaggct aaagaagaaa tgtttagcag gaccagaccc gtggttgtca tgatctcggg 1501 tagacctggt attggcaaga cccacatggc aagacacttg gctaagagta tcgccaacac 1561 catgagcggc gaccagaggg tgggacttgt cccacgcaac ggggttgatc attgggacgc 1621 ctacagggga gagagggtgg ttctgtggga tgattatggc atgggaaacc ctgtcaaaga 1681 tgccttaaca ctgcaagagt tggccgacac ctgcccagtg actctaaact gtgataggat 1741 tgagaacaaa gggaagatgt ttgacagtga tgtcatcata attacgacca atttagtcaa 1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaagggtcg acttcctggt 1861 ctatgcagaa tcaccagaaa tcgagaaggt taagagagac ttccccggcc aacctgacat 1921 gtggaaggac catttcaagc aagacttttc ccacataaag ctgactctag ccccacaggg 1981 tggatttgac aagaacggca acactccgca tggtaagggc accatgcgat ccctaaccca 2041 gggatccctg actgcaaggg ttgcaggcct tgttcatgag aggagagacg agttccagct 2101 ccaggggaac gaccttcaaa catacaactt tgacaccaac agggtctctg cgtttaggaa 2161 gctggccgca gacaacaagt acgggatcat ggagactatg agagtgggca cagcgcttaa 2221 gagtgtcaag accttagaag acctgaaagt tgcactgagg gatgtgaagt tcaatgaatg 2281 tgagataatt tacagaagct ccaaataccg agtctcttcc aatggcaaag gttctgtctc 2341 tgttgacaaa gttgaggacc aaacatccca aactgcaaac gaagtgggcg cagcactcct 2401 cagactcagg caggcaagag ccagatacta tgtcagctgc ttccaagatc tcgtttacac 2461 tctaatacag gttgccggag catcattcgt tgtcaacagg atctccaaaa ggttctgctg 2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaggtggc 2581 ccaaggcaga tgggagattg agccaaagga cacagaacca gaaggtaaga agggtaagaa 2641 caagaaagga agaggcaaga aacatacagc tttctccagt aaaggcctga gtgatgagga 2701 gtatgacgag ttcaagagaa tcagagaaga aaggaacgga aaatactcca ttgaggaata 2761 cctgcaagac cgggaccgct actatgagga agtggcagtt gcccgggcga cagaggagga 2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc ttccgcccca caaagaaaca 2881 gaggaaggaa gaaagggggg tgcttggctt ggtcactggc tcagacatca ggaagagaag 2941 gccagacgat tttcaaccga ggggcaacct gtgggcagac gacaccagga gtgtggacta 3001 caacgagaga cttgattttg aggctccccc aagtgtctgg tcaagaatag tcccactggg 3061 cactggctgg ggcttctggg tctcatcaaa ccttctgatc acaacaacgc acgtcctacc 3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcaaattc acaagtccgg 3181 agagttctgc aggttcagat tcccgagacc aattagacca gatgtcacgg ggctcgtgtt 3241 ggaggaaggt gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga 3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaagatac agggtaggac 3361 cgttggtggc cagatgggaa tgctcctcac aggggcaaat gcaaagaaca tggaccttgg 3421 cactggtcct ggtgattgcg gttgccctta catctacaaa cgtggcaatg atatagttgt 3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatctgtg ccactcaagg 3541 gatagatggg gaagcagtcc ttgagggaaa tgaaagccat ggcacttact gcggtgcccc 3601 aatcttgggt ccaggcaagg cgcccaaact tagtacgaag accaagttct ggcgctcatc 3661 accagatgct ttgccgccag gcacttatga gcctgcctac ttgggaggca aggaccccag 3721 agtggagaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga 3781 acccaggggc aagccaccca gacctgcagt cttggaagaa gctaaaaaga cagtaatgaa 3841 tgttttagag caaaccattg accctgctaa gccgtggacc tattcccaag catgtgcctc 3901 actggacaag accacctcca gtggcagccc ccatcatgtc aggaaaaatg accattggaa 3961 tggggaatcc ttcactggcc ccctcgcaga ccaagcatcc aaagccaacc tcatgtatga 4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgagc tagtcaaaac 4081 tgacaagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat 4141 gatcaggtgc gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcatagc 4201 ccttccatgc agggtaggaa tgaacatgaa tgaggatgga cccatcatat ttgacaaaca 4261 ttctaagtat aggtatcact atgatgctga ctactccagg tgggactcaa cccaacaaag 4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc 4381 gcaagtggtt gcagaggacc tcctggcacc cagccaatta gatgttggcg atttcgtcat 4441 ctcagtccag gagggtctgc catcaggggt cccatgcaca tcacaatgga attcaatagc 4501 acattggatc ctaactttga gtgcaatggc agaagtatcg ggtctttcac cagatgttgt 4561 tcaagcccac tcctgttttt cattctacgg tgatgatgag atcgtcagca ctgacatcaa 4621 ccttgatccc atgaagttga cacaaaaact cagagagtat ggcctggtcc ccactcgacc 4681 tgacaaaact gagggtcccc ttgtaataac tgaagacctc accggcctaa cgttcctgcg 4741 caggtcgatt gcacgggacc cagctgggtg gtttggaaag ttggaccaag actcaatcct 4801 caggcagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc 4861 tcactcccag cgggccacac aactcatggc ccttctcggt gaggcttcac tgcatggccc 4921 ccagttttac aagaaggtta gcaagatggt cattaatgag atcaaaagtg gtggtctgga 4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattctctg acctcagcac 5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg 5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg 5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggccaa caaaatataa 5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac 5281 caaggaactc acctggtgag atgcttctaa atcttgaatt aggccctgag ctcaaccctt 5341 atctgagtca tttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg 5401 tcctagctgg gaatgcgttc acagctggaa aaatcatctt tgccgccgtc ccaccacatt 5461 tccctgttga taacattagt gcagcccaaa tcacaatgtg cccccatgta attgttgatg 5521 taagacagct tgagccagtt ctactgcccc tccctgacat aaggaataga ttcttccact 5581 acaatcagga aaataccccc cggatgagac ttgtagctat gttgtacaca ccccttagag 5641 caaattctgg tgaggatgta ttcacggtgt cttgcagagt tctgacccgc cctgcccccg 5701 actttgagtt cacgtttctg gtgccaccaa ctgtggagtc aaagactaag ccctttacac 5761 ttcccattct gactcttggg gagctgtcca actccagatt ccccgctccg atagacatgc 5821 tgtatactga ccctaatgag gcaattgtgg tgcaaccaca aaatggtagg tgcactctag 5881 atggaacact tcagggcacc acccaactgg tacccaccca aattagctcc ttcaggggca 5941 cgctgattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga 6001 accaccctct ccacgttcag ctgaagaacc tcgatgggac accatatgat ccaacagatg 6061 aggtgccggc agttttgggt gccatagatt tcaagggaac tgtgtttggg gtcgctagtc 6121 aaagaaacac cacagggaac tctataggag caacccgcgc ccatgaagtg cacatagaca 6181 ccacaaaccc cagatacacc ccaaagctag gctctgtgtt gatgtattct gaatctgctg 6241 atttcgatga tggacaacct acccgcttca cccccattgg aatgggagcc gatgattggc 6301 gccaatggga attgcccgaa tattctggtc accttactct taacatgaac ttggctcccg 6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtaccatccg 6421 ctggtggcta tggatcaggt cacatagatt gcctcattcc acaggaatgg gttcagcatt 6481 tctaccagga ggccgctcca tcacagtctg cggtggctct tattaggtat gtcaaccctg 6541 acactggaag aaacattttt gaggcaaaac tgcatagaga agggttcatc actgtggcaa 6601 attctggaaa caaccccata gttgtgcccc ctaatggtta cttcaggttc gaggcctggg 6661 ttaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagtccaat 6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc 6781 cctaatcaat gctggggcca atgcaattaa ccaaaaggta gagtatgatt ttaataagca 6841 gctccaattg gcatccttca aacatgacaa agagatgttg cagtcacaag tgttggccac 6901 caaacagctc cagcaagaga tggtgaacat aaggcaaggg gtcttgtccg ctggcggctt 6961 ttcccctaca gatgccgcaa gaggtgctgt aaatgcaccg atgacaaaaa ttttggattg 7021 gaatgggact aggtactttg ctccaaacag tatgaagaca accagttact cgggccagtt 7081 ttccagcaac cctgtgcata ggcagcccac tctaacccgt tctgaatccc caaaaatcaa 7141 ggttaatagt gattctgcta gtgtgtatag ttctgcaact actattcctt cacaatcaac 7201 ccactcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagc 7261 agcttccacc ctatctagga ccagcgactg ggtgagagga caaaatgaga ggcttagccc 7321 gtttatggat ggtgctcttc aaacaacttt tgtcacacca ccatcgagca aggcttcatc 7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgtttaa 7441 tacccataga cagcctctct tcgctcatat tcgcaggcga ggggagtcac agatttagtg 7501 aaaagattga ttaggttttc tttctttctt cttctccttt tctttctttt aaaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa aaaaaaa //