Typing tool
|
Complete norovirus genomes
OP805362 | GII.17 | ||
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GII.P17 |
ORF1: 1..5091 ORF2: 5072..6688 ORF3: 6688..7451LOCUS OP805362 7451 bp RNA linear VRL 24-MAR-2023 DEFINITION Norovirus GII isolate 446222 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION OP805362 VERSION OP805362.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7451) AUTHORS Dinu,S., Oprea,M., Iordache,R.I., Rusu,L.C. and Usein,C.R. TITLE Genome characterisation of norovirus GII.P17-GII.17 detected during a large gastroenteritis outbreak in Romania in 2021 JOURNAL Arch Virol 168 (4), 116 (2023) PUBMED 36947248 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 7451) AUTHORS Dinu,S., Oprea,M., Iordache,R.I. and Usein,C.R. TITLE Direct Submission JOURNAL Submitted (10-NOV-2022) Molecular Epidemiology for Communicable Diseases Laboratory, Cantacuzino National Military Medical Institute for Research and Development, 103 Splaiul Independentei, Bucharest 050096, Romania COMMENT ##Assembly-Data-START## Assembly Method :: Bowtie2 v. NOV-2022 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7451 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="446222" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Romania" /collection_date="27-Jul-2021" /note="genotype: GII.P17-GII.17" gene <1..5091 /gene="ORF1" CDS <1..5091 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UZH91367.1" /translation="DASVAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARSKQPPP GETKQTQRPPRPPTPELVKKIPPPPPNGEDEPKIAYKVGEGVSGLPDLTTVAQPDAQN TAYSVPPLSQREAGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAK IELTPLSLYWRVVYTPQYLIAPETLKNLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLS RRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDVIGKLKP LNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAV ELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFFPKKE EANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSSKSA SPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKK VASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLT LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKR DFPGQPDMWKDHYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGL LHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDEL KQAIKNITIKKCQIVYNGCTYTVESDGRNKVVVEKVQNATVQTNNELTGALHHLRSAR IRYYVKCFQEAIYSLLQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDKEGCPKP RDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATLGLVTGS EIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLF ITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVV SILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC PYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGN APKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK PPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKNDYWSGE SFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTM IRCARAFGGLMDELKANCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ QRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIVINEGLPSGVPCTSQW NSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYG LKPTRPDKTEGPLVISEDLNGLTFLRRTITRDPAGWFGKLDQNSILRQLYWTRGPNHE DPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMF RWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..981 /gene="ORF1" /product="p48" mat_peptide 982..2079 /gene="ORF1" /product="NTPase" mat_peptide 2080..2616 /gene="ORF1" /product="p22" mat_peptide 2617..3015 /gene="ORF1" /product="VPg" mat_peptide 3016..3558 /gene="ORF1" /product="Pro" mat_peptide 3559..5088 /gene="ORF1" /product="RdRp" gene 5072..6688 /gene="ORF2" CDS 5072..6688 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UZH91368.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM ASQRNVGNDAPGSTRAHEAVISTYSPRFVPKLGSVNFKSNDNDFQLQPTRFTPVGIND DGDHPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLLFRSSVPCSGGYNQGIIDCL IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6688..>7451 /gene="ORF3" CDS 6688..>7451 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UZH91369.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAISQKIDFENNKQLQSA SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMPSPSAPQSKPAKSRSLGSSSSSSSVYSMSTQST SLTSGSSSNASSASTKLTNLSSGSSRNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRG" ORIGIN 1 gacgcttccg tcgccgttgc tggcaaaaac aacaacaacg acaaggaaaa atcttcaagt 61 gacagcttgt tttctaacat gactgttact tttaagaaag ccctcggggc gcggtctaaa 121 cagccgcccc cgggagaaac aaaacaaaca caaagaccac caaggccacc gacaccggaa 181 ttggtgaaga agataccccc accccccccc aatggtgagg atgaaccaaa gatagcgtat 241 aaggtgggag aaggtgtgtc tgggctgccc gacttgacaa ccgtggcaca acctgacgca 301 cagaacacag cctacagtgt ccccccactt agccagagag aggccggcga agctaaagaa 361 ccgttgcctg gctccattct ggaaatgtgg gatggtgaga tctaccacta tgggctgtat 421 gttgagcggg ggcatgtact gggagtgcac aagccacctg ccgcaataag ccttgccaaa 481 attgaattaa caccgctgtc tctctactgg agagtggttt acactcccca atatttgata 541 gctccagaga cccttaagaa tttaaatgga gaggctttcc catacacggc ctttgacaac 601 aactgttatg ccttctgttg ttgggtttta gacctcaacg actcctggct tagcagaaga 661 atgatccaaa gaacaactgg attcttcaga ccgtatcagg actggaacag aaaacccttg 721 ccaaccatgg atgaaccaaa aatcaagaag gccgcgaatg ctgttctgtg tgctctctcc 781 tcactcttca ctaggcccat caaagacgtc attggaaagc tcaaaccact gaacattatg 841 aacatactgg caacttgtga ttggactttt gcgggcatag tggaatccat gatccttctt 901 gctgagctct ttggggtgtt ctggacgccc ccagatgtgt ctgcaatgat tgctccctta 961 ctcggtgact acgagatgca aggccccgaa gacctggccg tggaacttgt gcccgtggta 1021 atgggaggaa taggtttggt gttaggattc accaaggaaa agatcggcaa gatgctttca 1081 tcagctgcga ccacactcag ggcctgtaag gatctaggat cttatgggtt ggagatactc 1141 aaactggtca tgaagtggtt cttccccaag aaggaggagg ccaacgagtt agccatggtg 1201 agggccattg aggatgcagt tctggatttg gaggcaatag aaaacaacca catgaccact 1261 ctccttaagg acaaagacag cctggccaca tacatgagga ctcttgactt ggaagaagaa 1321 aaagcaagga aactgtcatc caaatcggcg tcacctgaca tcgtgggcac agtaaacgca 1381 ttattggcaa ggatagcagc cgccaggtca ctggtccaca aggctaagga ggagctctcg 1441 agcagacaga ggcctgttgt tgtaatgata tcaggtaggc caggtatagg aaagacccat 1501 ctggccagag agctagccaa gaaggttgcg tcaacactgt caggcgacca aaggattgga 1561 ctgataccta gaaatggcgt cgaccattgg gacgcctaca aaggagagcg ggtggttctg 1621 tgggatgact atggcatgag caaccctata caggacgcac tgaggctcca agaattggct 1681 gacacctgtc ctctgaccct aaattgtgac aggattgaaa acaaaggaaa agtgttcgac 1741 agtgacgcca taattataac aaccaacctc gcaaacccag caccactgga ttatgtcaac 1801 tttgaggctt gttctagacg catagacttc ttggtgtatg cagacgcacc tgacatcgag 1861 aaggctaagc gtgacttccc tggccaacca gatatgtgga aagaccatta cagatcagac 1921 ttctcacaca ttaaacttca gctggcacca cagggaggct ttgataagaa tggcaacacc 1981 ccacatggca aaggtgtggt taagtctctg acgattggtt ctctgatcgc cagggcttct 2041 ggcttgctcc atgagagaat ggatgaattt gagctccaag gctctgattt accaaccttc 2101 aatttcgacc gtaacaaagt cgccgccttc agacaattgg cagctgaaaa caaatatggt 2161 cttatggaca cactgagggt cggcaaccaa ctgaaaagtg tcaaaaccct ggatgagctg 2221 aagcaggcta taaagaacat caccatcaag aagtgccaga tagtgtacaa tggatgcacc 2281 tacaccgtgg aatctgatgg gaggaacaag gttgtggttg aaaaggttca aaatgcaaca 2341 gtccaaacca acaatgaact tacaggagca ctccaccacc tgagatctgc aaggataagg 2401 tattatgtta aatgtttcca agaagctatt tactctctac tccaaattgc tggtgcagcc 2461 ttcgtcacca cacgcatcgt gaggcgcatg aacatctcaa acctctggtc gaagccaccc 2521 gtcgaagagg gtgatgagcc tgaagacaaa gaggggtgcc ccaagcccag ggatgaagat 2581 gacctcacta ttgactctaa agacattaaa gcagaaggga agaagggcaa gaacaaatct 2641 ggccggggca agaaacacac agctttctca tccaagggcc tcagtgatga agagtacgat 2701 gagtacaaga gaatcaggga ggagaggaat ggcaaatact caattgaaga atacctccag 2761 gacagggata gatactatga agagcttgcc attgctaagg ccactgagga agacttctgt 2821 gaagaggagg aaatcaaaat tcgccagaga atcttccggc ccaccaggaa gcaacggaga 2881 gaggaaagag ccacgcttgg gcttgtcaca ggatcggaaa tcagaaagag gaacccagat 2941 gactttaagc caaaaggaaa actttgggct gatgacaaca gaagtgtgga ctacaatgag 3001 aggatagatt ttgaggctcc cccgagtgtt tggtctagga tagtcaactt tggtacagga 3061 tggggattct gggtctcccc aagtctcttt ataacttcaa cacatgtcat accaaaagga 3121 atcactgagg cttttggagt tcccattaac caaattcaaa ttcacaaatc tggagagttt 3181 tgccgcttgc ggtttccaaa accaatcagg ccagacgtga gtggaatgat cttggaagag 3241 ggtgcccctg aaggcactgt tgtgtccatt ctcatcaaga ggacaacagg ggaactgatg 3301 cctctcgcag ttagaatggg aactcatgcc acaatgaaaa tccaaggtag aacggtgggt 3361 ggtcaaatgg gcatgcttct cactggctca aacgctaaaa gcatggacct aggcacaaca 3421 ccaggtgact gtgggtgccc atacatatac aaaaggggca atgacttcgt ggtcattggg 3481 gtgcacactg cagcagcccg tggaggcaac acggtcatat gtgccacaca gggaagtgaa 3541 ggcgaagcca ccctcgaagg aggtgacaac aagggcacct attgtggggc ccccatcttg 3601 ggacctggca acgcaccaaa attaagcaca aaaacaaaat tctggagatc ttccaacgcg 3661 ccgcttcctc caggtaccta tgaaccagca taccttggtg gaaaagaccc gcgtgtgaag 3721 ggaggcccat ctctacaaca ggttatgaga gaccaactta aaccttttac agagccaaga 3781 gggaagccac caaaaccaag tgtcctagaa tcagcaaaga agaccatcat taatgttctg 3841 gagcaaacca ttgacccccc tgaaaagtgg tcatatgccc aagcttgtgc atccctcgac 3901 aagacaacct ccagtggata cccgcatcac gtccggaaga atgactattg gagtggtgaa 3961 tccttcacgg ggaaacttgc agaccaggcc tcaaaagcaa accttatgta tgaggaaggc 4021 aagcacatgc aaccagttta caccgcagca ctcaaagacg agctcgtgaa aactgacaaa 4081 atttatggca agatcaagaa aagactcctg tggggctctg acctatctac catgattcga 4141 tgcgccaggg catttggtgg cctcatggat gagctcaaag caaattgtat cacactccct 4201 gtcagagttg gtatgaacat gaatgaagat ggtcccataa tatttgagaa gcactccagg 4261 tacaggtacc actatgatgc tgattactcc cgctgggatt ccacacaaca gcgggcagtg 4321 ctggaagcgg cacttgaaat catggtgaga ttttctgctg agccacagtt ggcacaaata 4381 gtggcagagg acctgctatc accaagtgtg gttgatgtgg gcgatttcaa aattgttatc 4441 aatgaaggcc taccatctgg cgtgccttgc acttcacaat ggaattctat tgcccactgg 4501 ttactcaccc tgtgtgccct gtctgaagta acaggactag gccctgacat catacaagcc 4561 aactccatgt actctttcta tggtgatgat gagattgtga gcacagacat aaaattagac 4621 ccagagaaat tgactgcaaa actcaaagaa tatggtctta aacccacccg gcctgacaag 4681 actgaggggc cactggtaat tagtgaggac ctgaatgggt tgactttcct ccgccgaaca 4741 atcacccgcg atccagcggg ttggtttgga aagttggacc aaaactccat cctcaggcag 4801 ctgtactgga caaggggacc caaccatgaa gaccccagtg agactatgat accacacgca 4861 cagagacctg tgcagctcat ggcactgcta ggagagtcct ccctacatgg accctcattt 4921 tacagcaagg ttagcaagct ggtcatatct gaacttaaag agggaggaat ggatttttat 4981 gtgcccagac aagagtcaat gttcaggtgg atgaggttct cagatctaag cacatgggag 5041 ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg acgccgctcc 5101 atctaatgat ggtgctgctg gtctcgtacc agagggcaat aacgagaccc ttcccctaga 5161 accagttgcg ggcgcagcta tagccgcacc cgtcactggc caaaacaata taattgaccc 5221 ctggattaga acaaattttg tgcaagcacc aaatggagag ttcacagtgt cacccagaaa 5281 ctctcctgga gaaattttac taaacctaga gttgggccct gatttgaacc cttatttggc 5341 tcatttgtca aggatgtaca atgggtacgc tggtggagtt gaagtccagg ttctcctggc 5401 agggaacgcg ttcactgccg ggaagatcct cttcgccgct gtcccgccaa atttcccagt 5461 ggaattctta agcccagccc agattacaat gctcccacat ataatagtag atgttagaac 5521 tcttgaacca attatgatcc cattacctga tgttaggaac acattcttcc attataacaa 5581 ccagcccaac agccgcatga gattagtggc tatgctctac acccccctta gatctaatgg 5641 ctcaggtgat gatgttttca ctgtttcttg cagggttttg actagaccta ctcctgattt 5701 tgagttcact tacttagtgc caccctctgt tgaatctaag actaagccct tttccttacc 5761 cattttaacc ctttctgagc tcacaaattc gaggttcccg gtccccattg attcgctttt 5821 caccgcccag aacaatgtgt tgcaggtgca gtgtcaaaat ggcaggtgca cacttgacgg 5881 tgagctacaa ggcacaaccc agttgctccc atctggcatc tgtgcgttca gaggacgggt 5941 gacagcagaa actgacaatc ctgataagtg gcacatgcaa ctgcaaaacc tcaatggcac 6001 aacgtatgac ccaactgatg atgtgccagc cccactgggt acacctgact tcaagggcgt 6061 cgtgtttggg atggcaagcc aaagaaatgt gggtaacgat gcgcccggct caaccagggc 6121 tcatgaggcg gtgatttcaa cctacagccc cagatttgtt cccaaattag gctctgtcaa 6181 ttttaaaagt aatgacaatg atttccaatt gcagccaaca agattcacac cagtgggcat 6241 caatgatgat ggcgaccacc cgttcagaca atgggaactg ccagactatt caggggtgct 6301 taccttgaat atgaaccttg cccccccggt tgctccaaat ttccctggtg aacaattatt 6361 actcttcaga tcttccgtgc catgttcagg aggttacaac caaggtatta tagattgtct 6421 tatcccccaa gaatggatcc aacacttcta ccaggaatca gcaccttctc agtcagacgt 6481 ggccctgatc aggtacgtca accccgacac gggtcgcaca ctgtttgagg caaaattgca 6541 cagatctggc tatatcactg tggctcactc tggagactat cctctcgttg ttccggctaa 6601 tggatacttt agatttgact cttgggtaaa tcagttttac tcactcgccc caatgggaac 6661 tgggaatggg cgaaggaggg ctcagtaatg gctggagctt tcattgcagg attggcgggt 6721 gacatgctca cgtcatccgt gggctccctg gtgaacgcag gggcaaacgc catcagccaa 6781 aagatagact ttgaaaacaa caaacaactc cagtctgctt cctttcaaca tgataaagag 6841 atgctccaag cgcaggtaaa tgcaaccaag cagctgcaat ctgagatgat agccctaaaa 6901 cagggggttt tggccgcagg cggcttttcc cccactgatg cagcgagggg ggccatcggt 6961 gcacccatga caaaggtgct tgactggtct ggcactcgat attgggctcc caattccaca 7021 aagacaactg gttattcggg gcaattcacc tcttcacctg tgcacatgcc cagcccgagt 7081 gctccacaat caaaacccgc aaagtccaga tctctaggtt cttcttcttc ttctagtagt 7141 gtttatagta tgtctaccca atcaacttct ctaacatctg gctcttctag taatgcttct 7201 tctgcttcta caaaattgac aaatttaagc tctggctcct ctcgaaacag gacagcagag 7261 tgggtgaacc aacagagaag tctcagccct ttcatgagtg gcgcactcaa tatctcacat 7321 gtcacgccac cttcaagtag ggcctccagt tctgggacgg tctcaaccgt gcccaaggaa 7381 gttttggact cctggacatc tgcattcaac acacgcagac agccgctctt cgcacacctc 7441 agagtgaggg g //