Typing tool
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Typing tool
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Complete norovirus genomes
| OP727611 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5085
ORF2: 5066..6688
ORF3: 6688..7494
LOCUS OP727611 7507 bp RNA linear VRL 01-NOV-2022
DEFINITION Norovirus GII isolate ODS3 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OP727611
VERSION OP727611.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7507)
AUTHORS Kelly,D., Allen,D.J. and Iturriza-Gomara,M.
TITLE Direct Submission
JOURNAL Submitted (27-OCT-2022) Clinical Infection, Microbiology and
Immunity, Institute of Infection and Global Health, 8 West Derby
Street, Liverpool, Please select. L697BE, United Kingdom
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.15.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7507
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="ODS3"
/isolation_source="stool sample"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="United Kingdom"
/collection_date="Jan-2017"
/note="genotype: GII.P31/GII.4"
gene <1..5085
/gene="ORF1"
CDS <1..5085
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UYR40583.1"
/translation="NDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPP
KEIPPRPPRPPTPELVKNIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNTA
FSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVE
LAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLN
ILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL
VPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKSASP
DIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIA
ASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLN
CDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQ
ALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQNTTVQTNNELAGALHHLRCARIR
YYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKD
DEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIE
EYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEI
RKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFIT
STHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATL
LIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPY
IYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAP
KLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPP
RPNVLEAAKKTVINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESF
TGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIR
CARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQR
DVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNS
IAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLK
PTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDP
FETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRW
MRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..975
/gene="ORF1"
/product="p48"
mat_peptide 976..2073
/gene="ORF1"
/product="NTPase"
mat_peptide 2074..2610
/gene="ORF1"
/product="p22"
mat_peptide 2611..3009
/gene="ORF1"
/product="VPg"
mat_peptide 3010..3552
/gene="ORF1"
/product="Pro"
mat_peptide 3553..5082
/gene="ORF1"
/product="RdRp"
gene 5066..6688
/gene="ORF2"
CDS 5066..6688
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYR40584.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVIGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSTFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGVL
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNHDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
gene 6688..7494
/gene="ORF3"
CDS 6688..7494
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYR40585.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMRVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAIPARGSSSKSS
NSSTATSVYSNQTASTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN
1 aacgacgctt ccgctgccgc tgttgccaac agcaacaacg acatcgcaaa atcttcaagt
61 gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc gcggcctaaa
121 cagccgcccc cgaaggaaat accacccaga cccccgcgac cacccacacc agaattggtc
181 aaaaatatcc ctcctccccc acccaacggg gaggatgaat tagtggtctc ttacagcgcc
241 aaagatggcg tctccggact gcctgagctc accactgtca gacaaccgga agaaacaaac
301 acggcgttca gtgtcccccc actcaaccaa agggagagca gggacgccaa ggagccacta
361 actggaacaa ttattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggaa
421 cgaggtctca tacttggtgt gcacaagcca ccggcagcca ttagccttgc caaggtcgag
481 ctagcaccgc tctctttgtt ctggagacct gtatacaccc cccagtatct catctctcca
541 gacactctta gaagactaca tggagagtca ttcccctaca ctgcatttga caacaattgc
601 tacgccttct gttgttgggt actagaccta aacgactcat ggctaagcag gagaatgatt
661 cagagaacaa caggcttctt cagaccgtac caggattgga acaggaaacc cctccccact
721 atggatgatt ccaaattaaa aaaggtagcc aacatattct tgtgcacttt gtcttcacta
781 ttcaccagac ccattaagga cataataggg aagttgaaac ctcttaacat ccttaacatt
841 ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact cttggcagaa
901 ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc cttgctaggt
961 gactatgaac tgcaaggacc tgaggacctt gcagtggaac tggtcccaat agtgatgggg
1021 gggataggtt tggtgctagg atttaccaaa gagaagatcg gaaagatgct atcatccgct
1081 gcatccactt taagagcttg taaagacctt ggtgcatacg gactggaaat cttaaaattg
1141 gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggctat ggtgagatcc
1201 atcgaggatg cagtactaga cctcgaggca attgaaaata accacatgac caccctactc
1261 aaagacaaag acagcttggc aacctacatg agaacccttg accttgagga ggaaaaagcc
1321 agaaaactct caaccaaatc tgcctcaccc gacattgtgg gcacaatcaa ctctcttctg
1381 gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct ctccagcagg
1441 ccgagacctg tcgttgtgat gatatcggga agaccaggga tagggaaaac tcacctcgcc
1501 agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt gggtcttatc
1561 ccacgtaatg gtgtcgacca ctgggacgca tacaagggcg aaagagttgt cctatgggac
1621 gactatggaa tgagcaaccc catccatgat gcccttaggt tgcaggagct tgctgacact
1681 tgccccctca cgctaaattg tgacagaatt gagaacaaag ggaaagtctt tgacagtgat
1741 gccataatta tcaccaccaa tctggccaac ccagcaccac tggattatgt caactttgaa
1801 gcgtgctcga gacgcattga tttcctcgtg tacgcggaag cccctgaggt ggagaaggca
1861 aagcgcgact tcccaggtca acctgacatg tggaagaatg cttttagtcc tgacttctca
1921 cacataaaac tgtcattggc cccacagggt ggttttgaca agaacggcaa cactccgcat
1981 ggaaaagggg tcatgaagac cctcaccacc ggctccctca tcgcccgagc atcagggttg
2041 ctccatgaga ggctagatga atatgagctg caaggcccag ccctcaccac tttcaacttt
2101 gaccgcaaca agatacttgc ttttaggcag cttgctgctg aaaacaagta tgggctgatg
2161 gacacaatga gagttggaaa acagctcaag gatgtcaaga ccatgtcaga cctcaaacaa
2221 gcactcaaga acatcgcgat caagaagtgc cagatagtgt acaatggtgg cacctacaca
2281 cttgaggctg atggcaaggg tagtgtgaaa gttgacaaag tgcaaaatac cactgtgcag
2341 accaacaatg aactagccgg tgccctacac cacctaaggt gcgctagaat cagatactat
2401 gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc tgcattcgtc
2461 accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc acaggtggaa
2521 gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga tgaagagttt
2581 gtcgtctcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccggtcgt
2641 ggtaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta cgatgagtac
2701 aagagaatca gagaagaaag gaatggtaag tactccatag aagaatacct tcaggacaga
2761 gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt ctgtgaagaa
2821 gaagaggcca aaattcggca gagaattttc agaccaacaa ggaaacaacg caaagaagag
2881 agggcctctc tcggcttggt cacaggctct gaaatcagga agagaaaccc agaagacttc
2941 aaacccaagg gaaagctgtg ggctgatgat gacagaagtg ttgactacaa tgagaaactc
3001 aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc aggctggggc
3061 ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca aggtgcaaaa
3121 gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga attctgtcga
3181 ttgagattcc caaagccaat cagaactgat gtgacgggca tgattctaga agaaggtgcg
3241 cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct catgcccctg
3301 gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt tggaggacaa
3361 atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc
3421 gactgcggct gcccctacat ctataagagg gggaatgact acgtggtcat aggagtccat
3481 acggccgctg cccgtggagg aaacactgtc atatgtgcca cccaggggag tgagggagaa
3541 gccacacttg aaggaggtga cagcaaaggg acatactgtg gcgcaccaat cttgggccca
3601 gggagcgctc cgaagctcag taccaagact aagttttgga gatcatccac aacaccgctc
3661 ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc
3721 ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa
3781 ccaccaagac caaatgtgtt ggaagctgcc aagaaaaccg tcatcaatgt ccttgagcaa
3841 acaattgacc caccccaaaa atggtcattt gcgcaagctt gcgcatccct tgacaaaacc
3901 acctccagcg gccacccgca ccacatgcgg aaaaacgact gttggaacgg ggagtcattc
3961 acaggaaaat tggctgatca agcctccaag gccaacctaa tgtttgaaga gggaaagaac
4021 atgactccag tctacacagg tgcacttaaa gatgagttgg taaagaccga caaagtttat
4081 ggtaaggtca agaagaggct tctgtggggt tcagatctgg cgaccatgat acggtgcgcc
4141 cgagcttttg gaggccttat ggatgaactc aaggcacact gtgtcacact tcctgtcaga
4201 gttggtatga acatgaatga ggatggcccc atcatctttg agaagcactc cagatataga
4261 tatcactatg atgctgatta ttcccggtgg gactcaacac aacaaaggga tgtgctagca
4321 gcagcactag aaatcatggt taagttctct ccagaaccac acttggccca gatagttgca
4381 gaagatctcc tttcccctag cgtgatggat gtaggtgact ttcaaatatc aataagtgag
4441 ggtctcccat ctggggtacc ttgcacctcc cagtggaatt ccatcgccca ctggctcctc
4501 actctgtgtg cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc
4561 cttttctctt tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag
4621 aagctgacag caaaactcaa ggagtacggg ctgaaaccaa cccgccccga caaaactgaa
4681 ggaccccttg ttatctctga agacctggat ggcctgacat tcctccggag aactgtgact
4741 cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattctcag gcaaatgtac
4801 tggaccaggg gtcccaacca tgaagaccca tttgagacaa tgataccaca ctcccaaaga
4861 cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggaccggc attctatagc
4921 aagattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt ttacgtgccc
4981 agacaagagc caatgtttag atggatgaga ttctcagatc tgagcacgtg ggagggcgat
5041 cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgcca acccatctga
5101 tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt
5161 tattggtgcc gctattgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat
5221 tagaaataat tttgtacaag cccctggtgg agagttcaca gtgtccccta ggaacgctcc
5281 aggtgaaata ctatggagcg cgcccttggg tcctgatcta aatccctacc tatcccattt
5341 ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa
5401 cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaggg
5461 cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta ggcaactaga
5521 acctgtgttg attcccttgc ccgatgtcag gaataatttc tatcattata atcaatcaaa
5581 tgaccccacc attaagttga tagcaatgct gtatacacca cttagggcta ataatgctgg
5641 ggatgatgtc ttcacagtct cttgccgagt tctcacgaga ccatcccccg attttgactt
5701 catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt
5761 aactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagc tgttcacggg
5821 tcccagcagt acttttgttg tccaaccaca aaacggtagg tgcacaactg atggcgtgct
5881 cctaggcacc actcaactgt ctcctgtcaa catctgcacc ttcagaggag atgtcaccca
5941 tattacaggt agtcataact acacaatgaa tttggcttct caaaattgga gcaattatga
6001 cccaacagaa gaaatcccag cccctctagg aactccagat tttgtgggga agattcaagg
6061 cgtgctcacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta
6121 cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa ctgacacaaa
6181 ccatgatttt gaggctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg
6241 tggcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcagaaa
6301 cacccctaat gtgcatctgg cccccgctgt agcccccact tttccgggtg aacaacttct
6361 cttcttcaga tccaccatgc ccggatgcag cgggtacccc aacatggatt tggactgtct
6421 actcccccag gaatgggtgc agtacttcta ccaagaggca gccccagcgc aatctgatgt
6481 ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgagt gtaagcttca
6541 taaatcaggc tatgttacag tggctcacac tggtcaacat gatttggtta tcccccccaa
6601 tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa
6661 tggaacgggg cgtagacgtg cactataatg gctggagctt tctttgctgg attggcatct
6721 gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa
6781 aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat
6841 ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggccacc
6901 aaaaggctac aacaggaaat gatgagagtt aagcaggcaa tgctcctaga gggtgggttc
6961 tctgagacag atgcagcccg cggggcaatc aacgccccca tgacaaaagc tttggactgg
7021 agcgggacaa ggtactgggc tcccgatgct aggaccacaa catacaatgc aggccgcttt
7081 tccacccctc aaccatcggg ggcactgccg ggaagagcta atcttaggga tgctatccct
7141 gctcggggtt cctccagtaa gtcttctaac tcttctactg ctacttctgt gtattcaaat
7201 caaactgctt caacgagact tggctctaca gctggctctg gtaccagtgt ctctagcttc
7261 ccgtcaactg caaggactag gagctgggtt gaagatcaaa gtaggaattt gtcacctttc
7321 atgagggggg cccacaacat atcgtttgtc accccaccat ctagcagatc ttctagccaa
7381 ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg
7441 cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggc ataatgtgaa
7501 aagacaa
//