Typing tool
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Typing tool
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Complete norovirus genomes
| OP723156 | GI.5 | |
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| GI.P4 |
ORF1: 1..5284
ORF2: 5268..6899
ORF3: 6899..7531
LOCUS OP723156 7605 bp RNA linear VRL 01-FEB-2023
DEFINITION Norovirus GI isolate MUR23 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OP723156
VERSION OP723156.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7605)
AUTHORS Alarcon-Linares,E., Moreno-Docon,A., Perez-Serna,L., Camacho,J.,
Sanchez Rodriguez,D., Gutierrez-Martin,M.L., Cabrerizo,M. and
Fernandez-Garcia,M.D.
TITLE Whole-Genome characterization of a Rare Recombinant GI.5[P4]
Norovirus causing a large foodborne outbreak of gastroenteritis in
a hotel, Spain, 2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7605)
AUTHORS Fernandez-Garcia,M.D.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2022) ENTEROVIRUS AND VIRAL GASTROENTERITIS,
INSTITUTO DE SALUD CARLOS III, Ctra. Majadahonda-Pozuelo, Km 2,
MAJADAHONDA, MADRID 28220, Spain
COMMENT ##Assembly-Data-START##
Assembly Method :: Metaspades v. v3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7605
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="MUR23"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="Spain: Murcia"
/collection_date="2021"
/note="genotype: GI.5[P4]"
gene <1..5284
/gene="ORF1"
CDS <1..5284
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UYQ90730.1"
/translation="IKNRFFTRLKNLGSNNKPIKIENTHMALNLISRGPSPIPQDKPP
KDQRDKPPRNVAETQQAMGWVDPPMDQNLPTWEELSQTEKQEILKNNSNWFDAGGLAP
ASIPTGYVKNTEQQPPDHQVKWSASNGVDLGVGNLTTVPGPAWNLCPMPPIDQRNNGP
AKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSIARITIHPIAAWWRVCYV
PTPDQRLNYDQLKELENEPWPYAAVTNNCYEFCCRILNLQDSWLERRLVTSGRFNHPA
QDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSKPFKDLLNKLKPLNVLNLLSNCDWTF
MGVVETIILLMELFGIFWNPPDVSSFIASLLPDMHLQGPEDLAKDLIPLVLGGVGLAI
GFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVLKKYFFGGDQTEKTLKDIETAVID
MEVISTTAVTQLVRDKQAARTYMNILDAEEEKARKLSVRHADPHVVSTTNALISRISL
ARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANEIRPGGKVGLVPRE
AVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCDRIEKKGLQFVSDA
IVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPDVEQTRRTNPGDTGALKDCFKSDF
SHLKMELAPQGGFDNQGNTPFGKGTMRPTTLSRLLIQAVALTMERQDEFQMQGQVYDF
DTDRISAFTSLARANGLGLISMASLGKKLRGVDSVHGLKNALSGYTITPCSIKWQARV
YDIESDGSNVRIKENTSAQTQRQQSIDTAALALTRLKAARAAAYAACIQSAITTILQM
AGSAIVINRAVKRMFGAHSSTIALEGPPREHRCRAHLAKAAGGGPIGHDDVIDKYGLC
ETEEEGTSEEINVELPTATSEGKNKGKTKKGRGRRANYNAFSRRGLSDEEYEEYKKIR
EEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHKIFYKSKKGRQNERR
QLGLVTGSDIRKRKPIDWTPPKNDWADDNREVDYNEKLSFEAPPTLWSRVVRFGSGWG
FWVSPTVFITTTHVIPSGAREFFGEPIESIAIHRAGEFTQFRFSHKVRPDLTGMVLEE
GCPEGVVCSILIKRDSGELLPLAVRMGAIASMKIQGRLVHGQSGMLLTGANAKGMDLG
TLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGETTLEGGDKGHYAGH
EIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPAYLGGRDPRVKSGPSLQQVLRDQLKP
FAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPTPWSFSDACQSLDKTTSSGHPYHKRK
NDDWNGTSFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVKPEKIYQKIKKRLLW
GADLSTVIRAARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPMIYAEHAKYKNHFDADY
SAWDSTQNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIRVKEGLPSG
FPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDFDPARLT
QVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRGSIERQLWW
TRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYV
PGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..1114
/gene="ORF1"
/product="p48"
mat_peptide 1115..2203
/gene="ORF1"
/product="NTPase"
mat_peptide 2204..2806
/gene="ORF1"
/product="p22"
mat_peptide 2807..3214
/gene="ORF1"
/product="VPg"
mat_peptide 3215..3757
/gene="ORF1"
/product="Pro"
mat_peptide 3758..5281
/gene="ORF1"
/product="RdRp"
gene 5268..6899
/gene="ORF2"
CDS 5268..6899
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYQ90731.1"
/translation="MMMASKDAPPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLAQMYNG
WVGNMRVRLILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPIEI
PLEDVRNTLYHNNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSPDFNFL
FLVPPTVEQKTRPFSLPNIPLHLQSNSRVPNPIQSMVISPDQAQNTQFQNGRCTTDGQ
LLGTTPVSVSQILKFRGKVSPGSKVINLTELDGSPFLAFEAPAPTGFPDLGTCDWHVE
LSLNSNSQSSGNPIVLRDIQPNSSDFVPHLGSVAVTVAIETAGDYTGTIQWISQPSNV
SPVPNVNLWTIPNYGSSLAEASQLAPVVYPPGFGEAVVYFMSHIPGPNTEHKPNLVPC
LLPQEFITHFVSEQAPPMGEAALIHYVDPDTNRNLGEFKLYPEGVITCVPNGTGPQQL
PLNGVFVFASWVSRFYQLKPVGTASSARGRLGVRR"
gene 6899..7531
/gene="ORF3"
CDS 6899..7531
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYQ90732.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN
SFKHDKEMLSYQVEMSNALLAKNLNTRYALLQSGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPNSSATTLRSGGFMSVPIPIQPKQKPSTISGFNNPAYGETMSRVSSWVQSQNS
SVRSVPPFHSSALRTVWVTPPGSTSTSSSVLSVPMGVFNTDRLPLFANRR"
ORIGIN
1 tataaagaac cgtttcttca caaggttgaa gaatttaggt tctaacaaca agcccataaa
61 aattgagaac actcacatgg cccttaactt aattagcagg ggcccatctc caattccaca
121 ggacaagccc ccaaaagacc agagggataa acccccaagg aatgtggctg agacccagca
181 ggcaatgggc tgggtcgacc cccccatgga ccagaatcta ccaacctggg aggagttgag
241 ccaaacagaa aaacaagaga tactcaaaaa caattcaaat tggtttgatg ctggtggttt
301 ggcaccagct agcatcccaa ctggttatgt aaagaacaca gaacaacaac cccctgatca
361 ccaagtcaaa tggagtgcca gtaatggggt tgatcttggg gtaggcaatt tgacaactgt
421 accaggtcca gcatggaatc tgtgccctat gccaccaatt gatcaacgca acaatggccc
481 agcgaaggaa ccacttattg gtgacatgat agaattctat gaggggcaca tttaccatta
541 tgcaatatac attggacaag gaaaaactgt tggggttcac tcaccccaag cggccttttc
601 aatagccagg ataactatac accccatcgc cgcttggtgg agggtttgtt atgtgccaac
661 acctgatcag aggttgaatt atgaccaact caaagaactt gagaatgagc catggccata
721 tgctgcagtt actaataatt gttatgagtt ctgctgcagg attctcaatc ttcaggactc
781 ttggttggaa cgtcgcttgg ttacatctgg ccgtttcaac cacccagcac aagactggtc
841 cagggacacg cctgatttcc agcaagatag caagttagag atagttaggg atgccgtgct
901 tgctgctatc aatggcttgg tatcaaaacc ttttaaggac ctcctaaata aacttaagcc
961 actcaacgtg ctcaacttac tctccaactg tgactggaca tttatggggg tggttgagac
1021 gataatacta cttatggagt tgtttgggat cttctggaat ccccctgatg tgtccagttt
1081 tatagcctca ctattacctg atatgcactt acagggacca gaagacctgg ctaaagactt
1141 gataccattg gtattggggg gtgtggggct tgcaattggg ttcaccaagg acaaagttac
1201 aaaagtcatg aagagtgctg ttgaaggact cagggcagcc acacaattag gccagtatgg
1261 cctagagata tttgcagttt taaagaaata tttctttggt ggagaccaaa cagagaagac
1321 cttgaaggac attgagacag ctgtgattga catggaggtc atctcgacaa ctgctgtaac
1381 tcaactagtc agggacaaac aagctgcccg aacctacatg aacatcttag atgctgaaga
1441 agagaaggca agaaagcttt cagttagaca tgcagacccc catgttgtgt ccacgaccaa
1501 tgccctgatt tcacgtattt cattggctcg ttccgcactc gctaaggcac aagctgagat
1561 gactaatagg gttaaaccag tagtgataat gatgtgtggt cccccaggta taggcaaaac
1621 aaaagcagcc gagtacctag ctaagagact ggctaatgag atacggcctg gaggaaaagt
1681 gggccttgtg ccaagggagg ctgtggacca ctgggatgga tatcatggtg aagaggttat
1741 gctatgggat gactatggta tgtcaaaaat agctgatgac tgcaataaat tacaggctat
1801 agccgacaca gctccactca ctttgaattg tgaccggatt gagaagaaag ggttacaatt
1861 tgtctctgat gccatagtga taacaacaaa tgccccagga ccagctccag ttgactttgt
1921 caatctcggc ccagtatgtc ggcgggtaga tttcctggtt tattgcactg cacccgatgt
1981 tgaacagaca cgtcgcacta accctggaga caccggagcc ctcaaggatt gttttaaaag
2041 tgacttttct catttaaaaa tggagttggc tccacagggc ggattcgaca accaaggaaa
2101 cactccattt ggcaaaggga ccatgcggcc taccacatta agccgcctcc tcatacaggc
2161 cgtggcacta accatggagc gtcaggatga gttccagatg caaggtcagg tgtacgactt
2221 tgatactgac aggatctctg ccttcaccag tttagcaaga gctaatggtt tgggtctcat
2281 tagcatggcc tccctaggga agaaattgag gggtgtggac tcggttcatg gcctcaagaa
2341 tgcactatca ggctacacca taaccccctg tagcataaag tggcaagcta gagtgtatga
2401 cattgaatca gatggctcca atgtgcgcat aaaagaaaac acctcagctc agacacaacg
2461 ccagcaatca atagatacag cagccctggc acttaccaga cttaaagcag cacgggcagc
2521 agcatatgca gcttgcatac aaagtgcaat aacaactatc ctgcagatgg ctgggtcagc
2581 catcgttata aatcgtgctg tcaagaggat gttcggtgca cattcgagca ctatagccct
2641 tgaaggacct ccaagagaac atcggtgcag ggcccattta gccaaggctg caggtggtgg
2701 gccaataggc catgatgatg ttattgataa atatggccta tgtgagactg aagaagaggg
2761 taccagtgag gagataaatg tggagctacc caccgccact tccgaaggta agaacaaagg
2821 aaagaccaag aaaggaagag gcagaagggc caactacaat gctttttcac ggcgcggcct
2881 gagtgatgag gagtacgagg aatataagaa gatcagggaa gaaaagaatg gcaactacag
2941 cattcaggag taccttgaag acaggcaacg ctatgaagaa gagctcgcag aagtgcaagc
3001 tggtggtgat ggaggcattg gtgagacaga aatggaaatc cgacataaaa tcttttacaa
3061 gtctaaaaag ggccgccaga atgaacgccg ccaactagga ctagtcactg gtagtgatat
3121 tagaaaaaga aagccaattg attggacccc ccccaaaaat gattgggcag atgataatag
3181 ggaagtggac tacaacgaga aactcagttt tgaagcccca ccaacccttt ggagccgcgt
3241 tgtgagattt ggctctgggt ggggcttttg ggtgagcccg actgttttta tcaccaccac
3301 tcatgtcata ccatctgggg cgcgtgaatt ctttggggaa cccatcgagt ccattgcaat
3361 ccatcgtgct ggcgaattca cacaattcag attttcacac aaggtccgcc cagacctgac
3421 tggaatggtg ctggaggaag gttgccctga gggtgtcgtg tgttctattc tcataaagcg
3481 tgactctggt gagctgctgc cccttgctgt ccgaatgggc gctatagcgt ccatgaagat
3541 tcagggaagg ctagtgcatg gccagtctgg gatgctgctc actggagcta acgctaaggg
3601 gatggattta ggcaccctac caggtgattg tggtgcccct tatgtgtaca aaaggaataa
3661 cgactgggtg gtctgtggtg tacatgcagc cgctacaaag tcaggcaaca ctgtggtgtg
3721 tgctgtccag gctggagagg gtgaaaccac cctagagggt ggtgacaaag gccactatgc
3781 aggccatgaa ataatcaagc atagtaaagg cccagctcta tctaccaaga ccaagttttg
3841 gagatcaacc cctgaaccat taccaccagg tgtttatgaa ccagcatatc ttgggggtcg
3901 agatcccagg gtaaaaagtg ggccctctct acagcaagtt ttgcgtgatc agttgaaacc
3961 atttgctgag ccgcgaggcc gaatgccaga gcctggtcta cttgaggcag ctgttgaaac
4021 tgttacatcc atgcttgagc aaacaatgga cacaccaacc ccctggtctt tctctgatgc
4081 atgtcagtca cttgacaaga caacaagttc aggacacccg tatcacaaaa gaaagaatga
4141 tgattggaat ggaacttcat tcgttggaga gcttggagaa caggcagcac atgccaacaa
4201 tatgtatgaa ttaggcaaat ctatgaaacc actatacact gcagccctta aagatgagtt
4261 agtcaagccc gagaaaattt atcaaaagat taagaagagg cttctctggg gtgctgatct
4321 ctcgacagtc ataagggctg ccagggcctt tggacccttt tgtgatgcta taaagtctca
4381 tgtcattaaa ctccccatca aagttggtat gaactccata gaagatggcc caatgattta
4441 tgcagagcat gcaaaatata agaaccattt tgatgcagat tattcggcct gggattccac
4501 acaaaataga caaatcatga ctgaatcctt tgcaatcatg tgccgtctca cagcatcacc
4561 ggaattggct tctgttgtag ctaaagattt actagcccct tcagaaatgg atgttggtga
4621 ttacatcatc cgtgtaaaag agggcttgcc atcaggattc ccttgcacat cacaagtgaa
4681 cagcataaac cactggctga tcacactgtg tgccatgtct gaagtcacgg gtttgtcacc
4741 tgatgtcata caatcccagt cttacttttc cttctatggt gatgatgaga tagtctctac
4801 agacattgat tttgaccccg ctcgcctcac tcaagtgctc aaggaatatg gattgagacc
4861 caccagacca gacaagtcag aagggcccat catactcaga agacaggtgg atggtcttgt
4921 tttcttgagg aggacaatct ctaaagatgc tgcgggcttc cagggaaggc tagatagggg
4981 ctcaatcgaa agacagctct ggtggactcg aggccctaac catgatgacc ccagtgagac
5041 tctaatccca cacccccaga ggaaagttca gctcatatcc ctccttggcg aggcttccct
5101 ccatggtgag aagttttaca ggaagatctc cagtaaagtt atacaggaaa taaaaactgg
5161 tggtttggaa atgtatgtgc caggctggca ggccatgttc cgctggatgc gctttcatga
5221 cctcggattg tggacaggag atcgcaatct cctgcccgaa ttcgtaaatg atgatggcgt
5281 ctaaggacgc cccaccaagc gcagatggcg cgaatggcgc cggtcagctt gtgccggagg
5341 ttaataatgc tgaaccactg ccacttgatc cagtggcggg ggcttccacc gcccttgcca
5401 ctgctggaca agttaatatg attgacccat ggatctttaa taattttgtc caggcccccc
5461 agggtgaatt tactatttct ccaaataata cccccggcga tatcttgttt gatttacaat
5521 taggtccaca tctaaatcct tttctagcac atttggctca gatgtacaat ggctgggttg
5581 gcaacatgcg ggtcaggctc atcttggccg gcaatgcttt cactgctggt aaagttataa
5641 tttgttgtgt tccccctggt tttcaatcta gaaccctttc catagcccag gctacactct
5701 ttccccatgt gatcgctgac gtgagaactc tggaaccaat tgagatccct ttagaagatg
5761 ttaggaatac tctttatcat aataatgaca atcaaccaac aatgcgctta ctgtgcatgc
5821 tctacacgcc attacgcacc ggtggcggtt ctggtggcac agatgcgttt gttgtagcag
5881 gtcgagtttt aacttgtcct agccctgatt tcaatttctt gtttttagtc ccacccactg
5941 tggagcagaa gacacgtccc tttagtctgc ccaatatacc tttgcacttg cagtctaact
6001 cccgtgtccc caaccccata cagagtatgg tcatttcgcc tgatcaggcc cagaataccc
6061 aatttcagaa tggccgctgc accaccgatg ggcagctctt gggtacaaca cctgtctcag
6121 ttagtcagat cttaaagttt agaggaaagg tgtcacctgg ttctaaggtc atcaatctca
6181 ctgagttaga tggttcccct tttctggctt ttgaggcccc tgcgcccacg ggctttcctg
6241 acttgggaac ttgtgattgg catgttgaat taagccttaa ctcaaatagt caaagttctg
6301 gcaacccaat tgtactaaga gacatacaac caaattcttc agattttgtc ccacacttgg
6361 gcagtgtggc tgtcaccgtt gcaattgaaa cagctgggga ttatactggt acaatacaat
6421 ggatctctca gccatccaat gtctccccag ttcccaatgt caacctttgg actatcccta
6481 actatggatc aagtttggca gaagcctccc aattggcccc cgtagtgtac cctccgggat
6541 ttggtgaagc tgtagtgtac tttatgtctc acataccagg cccaaacact gaacacaagc
6601 ccaatctggt accctgccta cttccacaag agtttataac tcattttgtc agtgagcaag
6661 ccccacccat gggtgaggca gctcttatcc attatgtgga cccagacacc aaccgtaatc
6721 taggtgagtt caaactgtat cctgaaggtg ttatcacctg tgtgccaaat ggcactggtc
6781 cacaacagct ccccctcaat ggggtctttg tctttgcttc ttgggtttct agattttatc
6841 aattaaagcc tgtgggaacg gccagttcgg ccagaggtag gcttggagtc aggagataat
6901 ggctcaagcc atcattggag ccattgctgc atcagcggct ggaagtgccc ttggagctgg
6961 tatccaagca ggtgctgagg ccgccctcca gagccagagg ttccagcagg accttaccct
7021 tcaacaaaat tcttttaaac atgataagga aatgttgtca tatcaagttg aaatgtctaa
7081 tgctttgtta gctaaaaatc ttaatactcg ctatgctttg ctccaatctg gaggtctgtc
7141 tagtgctgat gctgctcgtg ctgtagcagg tgcgcctgtt acaaggattg ttgattggaa
7201 tggcacgaga gtggcagctc caaactcttc tgcaacaact ctcagatctg gtggatttat
7261 gtctgttcct atacctattc aacccaaaca aaagccctct accatctcag ggtttaataa
7321 tccagcatat ggagaaacta tgtcaagagt ttcctcctgg gtccaatccc agaattcaag
7381 tgttagaagt gtgcctcctt ttcatagttc tgccctcagg actgtttggg ttacaccacc
7441 aggttcaact tctacttctt catctgtttt atccgtgcct atgggcgtgt ttaacaccga
7501 taggcttccc ctattcgcaa ataggagatg atattgttgt aataagaata acaatgtgag
7561 catcttattc aatttggtct aattagttta ataattaggt ttaat
//