Typing tool
|
Complete norovirus genomes
OP723155 | GI.5 | ||
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GI.P4 |
ORF1: 1..5284 ORF2: 5268..6899 ORF3: 6899..7531LOCUS OP723155 7616 bp RNA linear VRL 01-FEB-2023 DEFINITION Norovirus GI isolate MUR13 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OP723155 VERSION OP723155.1 KEYWORDS . SOURCE Norovirus GI ORGANISM Norovirus GI Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7616) AUTHORS Alarcon-Linares,E., Moreno-Docon,A., Perez-Serna,L., Camacho,J., Sanchez Rodriguez,D., Gutierrez-Martin,M.L., Cabrerizo,M. and Fernandez-Garcia,M.D. TITLE Whole-Genome characterization of a Rare Recombinant GI.5[P4] Norovirus causing a large foodborne outbreak of gastroenteritis in a hotel, Spain, 2021 JOURNAL Unpublished REFERENCE 2 (bases 1 to 7616) AUTHORS Fernandez-Garcia,M.D. TITLE Direct Submission JOURNAL Submitted (26-OCT-2022) ENTEROVIRUS AND VIRAL GASTROENTERITIS, INSTITUTO DE SALUD CARLOS III, Ctra. Majadahonda-Pozuelo, Km 2, MAJADAHONDA, MADRID 28220, Spain COMMENT ##Assembly-Data-START## Assembly Method :: Metaspades v. v3.14.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7616 /organism="Norovirus GI" /mol_type="genomic RNA" /isolate="MUR13" /isolation_source="stool" /host="Homo sapiens" /db_xref="taxon:122928" /country="Spain: Murcia" /collection_date="2021" /note="genotype: GI.5[P4]" gene <1..5284 /gene="ORF1" CDS <1..5284 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="UYQ90727.1" /translation="IKNRFFTRLKNLGSNNKPIKIENTHMALNLISRGPSPIPQDKPP KDQRDKPPRNVAETQQAMGWVDPPMDQNLPTWEELSQTEKQEILKNNSNWFDAGGLAP ASIPTGYVKNTEQQPPDHQVKWSASNGVDLGVGNLTTVPGPAWNLCPMPPIDQRNNGP AKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSIARITIHPIAAWWRVCYV PTPDQRLNYDQLKELENEPWPYAAVTNNCYEFCCRILNLQDSWLERRLVTSGRFNHPA QDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSKPFKDLLNKLKPLNVLNLLSNCDWTF MGVVETIILLMELFGIFWNPPDVSSFIASLLPDMHLQGPEDLAKDLIPLVLGGVGLAI GFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVLKKYFFGGDQTEKTLKDIETAVID MEVISTTAVTQLVRDKQAARTYMNILDAEEEKARKLSVRHADPHVVSTTNALISRISL ARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANEIRPGGKVGLVPRE AVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCDRIEKKGLQFVSDA IVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPDVEQTRRTNPGDTGALKDCFKSDF SHLKMELAPQGGFDNQGNTPFGKGTMRPTTLSRLLIQAVALTMERQDEFQMQGQVYDF DTDRISAFTSLARANGLGLISMASLGKKLRGVDSVHGLKNALSGYTITPCSIKWQARV YDIESDGSNVRIKENTSAQTQRQQSIDTAALALTRLKAARAAAYAACIQSAITTILQM AGSAIVINRAVKRMFGAHSSTIALEGPPREHRCRAHLAKAAGGGPIGHDDVIDKYGLC ETEEEGTSEEINVELPTATSEGKNKGKTKKGRGRRANYNAFSRRGLSDEEYEEYKKIR EEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHKIFYKSKKGRQNERR QLGLVTGSDIRKRKPIDWTPPKNDWADDNREVDYNEKLSFEAPPTLWSRVVRFGSGWG FWVSPTVFITTTHVIPSGAREFFGEPIESIAIHRAGEFTQFRFSHKVRPDLTGMVLEE GCPEGVVCSILIKRDSGELLPLAVRMGAIASMKIQGRLVHGQSGMLLTGANAKGMDLG TLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGETTLEGGDKGHYAGH EIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPAYLGGRDPRVKSGPSLQQVLRDQLKP FAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPTPWSFSDACQSLDKTTSSGHPYHKRK NDDWNGTSFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVKPEKIYQKIKKRLLW GADLSTVIRAARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPMIYAEHAKYKNHFDADY SAWDSTQNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIRVKEGLPSG FPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDFDPARLT QVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRGSIERQLWW TRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYV PGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV" mat_peptide <1..1114 /gene="ORF1" /product="p48" mat_peptide 1115..2203 /gene="ORF1" /product="NTPase" mat_peptide 2204..2806 /gene="ORF1" /product="p22" mat_peptide 2807..3214 /gene="ORF1" /product="VPg" mat_peptide 3215..3757 /gene="ORF1" /product="Pro" mat_peptide 3758..5281 /gene="ORF1" /product="RdRp" gene 5268..6899 /gene="ORF2" CDS 5268..6899 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UYQ90728.1" /translation="MMMASKDAPPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLAQMYNG WVGNMRVRLILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPIEI PLEDVRNTLYHNNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSPDFNFL FLVPPTVEQKTRPFSLPNIPLHLQSNSRVPNPIQSMVISPDQAQNTQFQNGRCTTDGQ LLGTTPVSVSQILKFRGKVSPGSKVINLTELDGSPFLAFEAPAPTGFPDLGTCDWHVE LSLNSNSQSSGNPIVLRDIQPNSSDFVPHLGSVAVTVAIETAGDYTGTIQWISQPSNV SPVPNVNLWTIPNYGSSLAEASQLAPVVYPPGFGEAVVYFMSHVPGPNTEHKPNLVPC LLPQEFITHFVSEQAPPMGEAALIHYVDPDTNRNLGEFKLYPEGVITCVPNGTGPQQL PLNGVFVFASWVSRFYQLKPVGTASSARGRLGVRR" gene 6899..7531 /gene="ORF3" CDS 6899..7531 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UYQ90729.1" /translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN SFKHDKEMLSYQVEMSNALLAKNLNTRYALLQSGGLSSADAARAVAGAPVTRIVDWNG TRVAAPNSSATTLRSGGFMSVPIPIQPKQKPSTISGFNNPAYGETMSRVSSWVQSQNS SVRSVPPFHSSALRTVWVTPPGSTSTSSSVLSVPMGVFNTDRLPLFANRR" ORIGIN 1 tataaagaac cgtttcttca caaggttgaa gaatttaggt tctaacaaca agcccataaa 61 aattgagaac actcacatgg cccttaactt aattagcagg ggcccatctc caattccaca 121 ggacaagccc ccaaaagacc agagggataa acccccaagg aatgtggctg agacccagca 181 ggcaatgggc tgggtcgacc cccccatgga ccagaatcta ccaacctggg aggagttgag 241 ccaaacagaa aaacaagaga tactcaaaaa caattcaaat tggtttgatg ctggtggttt 301 ggcaccagct agcatcccaa ctggttatgt aaagaacaca gaacaacaac cccctgatca 361 ccaagtcaaa tggagtgcca gtaatggggt tgatcttggg gtaggcaatt tgacaactgt 421 accaggtcca gcatggaatc tgtgccctat gccaccaatt gatcaacgca acaatggccc 481 agcgaaggaa ccacttattg gtgacatgat agaattctat gaggggcaca tttaccatta 541 tgcaatatac attggacaag gaaaaactgt tggggttcac tcaccccaag cggccttttc 601 aatagccagg ataactatac accccatcgc cgcttggtgg agggtttgtt atgtgccaac 661 acctgatcag aggttgaatt atgaccaact caaagaactt gagaatgagc catggccata 721 tgctgcagtt actaataatt gttatgagtt ctgctgcagg attctcaatc ttcaggactc 781 ttggttggaa cgtcgcttgg ttacatctgg ccgtttcaac cacccagcac aagactggtc 841 cagggacacg cctgatttcc agcaagatag caagttagag atagttaggg atgccgtgct 901 tgctgctatc aatggcttgg tatcaaaacc ttttaaggac ctcctaaata aacttaagcc 961 actcaacgtg ctcaacttac tctccaactg tgactggaca tttatggggg tggttgagac 1021 gataatacta cttatggagt tgtttgggat cttctggaat ccccctgatg tgtccagttt 1081 tatagcctca ctattacctg atatgcactt acagggacca gaagacctgg ctaaagactt 1141 gataccattg gtattggggg gtgtggggct tgcaattggg ttcaccaagg acaaagttac 1201 aaaagtcatg aagagtgctg ttgaaggact cagggcagcc acacaattag gccagtatgg 1261 cctagagata tttgcagttt taaagaaata tttctttggt ggagaccaaa cagagaagac 1321 cttgaaggac attgagacag ctgtgattga catggaggtc atctcgacaa ctgctgtaac 1381 tcaactagtc agggacaaac aagctgcccg aacctacatg aacatcttag atgctgaaga 1441 agagaaggca agaaagcttt cagttagaca tgcagacccc catgttgtgt ccacgaccaa 1501 tgccctgatc tcacgtattt cattggctcg ttccgcactc gctaaggcac aagctgagat 1561 gactaatagg gttaaaccag tagtgataat gatgtgtggt cccccaggta taggcaaaac 1621 aaaagcagcc gagtacctag ctaagagact ggctaatgag atacggcctg gaggaaaagt 1681 gggccttgtg ccaagggagg ctgtggacca ctgggatgga tatcatggtg aagaggttat 1741 gctatgggat gactatggta tgtcaaaaat agctgatgac tgcaataaat tacaggctat 1801 agccgacaca gctccactca ctttgaattg tgaccggatt gagaagaaag ggttacaatt 1861 tgtctctgat gccatagtga taacaacaaa tgccccagga ccagctccag ttgactttgt 1921 caatctcggc ccagtatgtc ggcgggtaga tttcctggtt tattgcactg cacccgatgt 1981 tgaacagaca cgtcgcacta accctggaga caccggagcc ctcaaggatt gttttaaaag 2041 tgacttttct catttaaaaa tggagttggc tccacagggc ggattcgaca accaaggaaa 2101 cactccattt ggcaaaggga ccatgcggcc taccacatta agccgcctcc tcatacaggc 2161 cgtggcacta accatggagc gtcaggatga gttccagatg caaggtcagg tgtacgactt 2221 tgatactgac aggatctctg ccttcaccag tttagcaaga gctaatggtt tgggtctcat 2281 tagcatggcc tccctaggga agaaattgag gggtgtggac tcggttcatg gcctcaagaa 2341 tgcactatca ggctacacca taaccccctg tagcataaag tggcaagcta gagtgtatga 2401 cattgaatca gatggctcca atgtgcgcat aaaagaaaac acctcagctc agacacaacg 2461 ccagcaatca atagatacag cagccctggc acttaccaga cttaaagcag cacgggcagc 2521 agcatatgca gcttgcatac aaagtgcaat aacaactatc ctgcagatgg ctgggtcagc 2581 catcgttata aatcgtgctg tcaagaggat gttcggtgca cattcgagca ctatagccct 2641 tgaaggacct ccaagagaac atcggtgcag ggcccattta gccaaggctg caggtggtgg 2701 gccaataggc catgatgatg ttattgataa atatggccta tgtgagactg aagaagaggg 2761 taccagtgag gagataaatg tggagctacc caccgccact tccgaaggta agaacaaagg 2821 aaagaccaag aaaggaagag gcagaagggc caactacaat gctttttcac ggcgcggcct 2881 gagtgatgag gagtacgagg aatataagaa gatcagggaa gaaaagaatg gcaactacag 2941 cattcaggag taccttgaag acaggcaacg ctatgaagaa gagctcgcag aagtgcaagc 3001 tggtggtgat ggaggcattg gtgagacaga aatggaaatc cgacataaaa tcttttacaa 3061 gtctaaaaag ggccgccaga atgaacgccg ccaactagga ctagtcactg gtagtgatat 3121 tagaaaaaga aagccaattg attggacccc ccccaaaaat gattgggcag atgataatag 3181 ggaagtggac tacaacgaga aactcagttt tgaagcccca ccaacccttt ggagccgcgt 3241 tgtgagattt ggctctgggt ggggcttttg ggtgagcccg actgttttta tcaccaccac 3301 tcatgtcata ccatctgggg cgcgtgaatt ctttggggaa cccatcgagt ccattgcaat 3361 ccatcgtgct ggcgaattca cacaattcag attttcacac aaggtccgcc cagacctgac 3421 tggaatggtg ctggaggaag gttgccctga gggtgtcgtg tgttctattc tcataaagcg 3481 tgactctggt gagctgctgc cccttgctgt ccgaatgggc gctatagcgt ccatgaagat 3541 tcagggaagg ctagtgcatg gccagtctgg gatgctgctc actggagcta acgctaaggg 3601 gatggattta ggcaccctac caggtgattg tggtgcccct tatgtgtaca aaaggaataa 3661 cgactgggtg gtctgtggtg tacatgcagc cgctacaaag tcaggcaaca ctgtggtgtg 3721 tgctgtccag gctggagagg gtgaaaccac cctagagggt ggtgacaaag gccactatgc 3781 aggccatgaa ataatcaagc atagtaaagg cccagctcta tctaccaaga ccaagttttg 3841 gagatcaacc cctgaaccat taccaccagg tgtttatgaa ccagcatatc ttgggggtcg 3901 agatcccagg gtaaaaagtg ggccctctct acagcaagtt ttgcgtgatc agttgaaacc 3961 atttgctgag ccgcgaggcc gaatgccaga gcctggtcta cttgaggcag ctgttgaaac 4021 tgttacatcc atgcttgagc aaacaatgga cacaccaacc ccctggtctt tctctgatgc 4081 atgtcagtca cttgacaaga caacaagttc aggacacccg tatcacaaaa gaaagaatga 4141 tgattggaat ggaacttcat tcgttggaga gcttggagaa caggcagcac atgccaacaa 4201 tatgtatgaa ttaggcaaat ctatgaaacc actatacact gcagccctta aagatgagtt 4261 agtcaagccc gagaaaattt atcaaaagat taagaagagg cttctctggg gtgctgatct 4321 ctcgacagtc ataagggctg ccagggcctt tggacccttt tgtgatgcta taaagtctca 4381 tgtcattaaa ctccccatca aagttggtat gaactccata gaagatggcc caatgattta 4441 tgcagagcat gcaaaatata agaaccattt tgatgcagat tattcggcct gggattccac 4501 acaaaataga caaatcatga ctgaatcctt tgcaatcatg tgccgtctca cagcatcacc 4561 ggaattggct tctgttgtag ctaaagattt actagcccct tcagaaatgg atgttggtga 4621 ttacatcatc cgtgtaaaag agggcttgcc atcaggattc ccttgcacat cacaagtgaa 4681 cagcataaac cactggctga tcacactgtg tgccatgtct gaagtcacgg gtttgtcacc 4741 tgatgtcata caatcccagt cttacttttc cttctatggt gatgatgaga tagtctctac 4801 agacattgat tttgaccccg ctcgcctcac tcaagtgctc aaggaatatg gattgagacc 4861 caccagacca gacaagtcag aagggcccat catactcaga agacaggtgg atggtcttgt 4921 tttcttgagg aggacaatct ctaaagatgc tgcgggcttc cagggaaggc tagatagggg 4981 ctcaatcgaa agacagctct ggtggactcg aggccctaac catgatgacc ccagtgagac 5041 tctaatccca cacccccaga ggaaagttca gctcatatcc ctccttggcg aggcttccct 5101 ccatggtgag aagttttaca ggaagatctc cagtaaagtt atacaggaaa taaaaactgg 5161 tggtttggaa atgtatgtgc caggctggca ggccatgttc cgctggatgc gctttcatga 5221 cctcggattg tggacaggag atcgcaatct cctgcccgaa ttcgtaaatg atgatggcgt 5281 ctaaggacgc cccaccaagc gcagatggcg cgaatggcgc cggtcagctt gtgccggagg 5341 ttaataatgc tgaaccactg ccacttgatc cagtggcggg ggcttccacc gcccttgcca 5401 ctgctggaca agttaatatg attgacccat ggatctttaa taattttgtc caggcccccc 5461 agggtgaatt tactatttct ccaaataata cccccggcga tatcttgttt gatttacaat 5521 taggtccaca tctaaatcct tttctagcac atttggctca gatgtacaat ggctgggttg 5581 gcaacatgcg ggtcaggctc atcttggccg gcaatgcttt cactgctggt aaagttataa 5641 tttgttgtgt tccccctggt tttcaatcta gaaccctttc catagcccag gctacactct 5701 ttccccatgt gatcgctgac gtgagaactc tggaaccaat tgagatccct ttagaagatg 5761 ttaggaatac tctttatcat aataatgaca atcaaccaac aatgcgctta ctgtgcatgc 5821 tctacacgcc attacgcacc ggtggcggtt ctggtggcac agatgcgttt gttgtagcag 5881 gtcgagtttt aacttgtcct agccctgatt tcaatttctt gtttttagtc ccacccactg 5941 tggagcagaa gacacgtccc tttagtctgc ccaatatacc tttgcacttg cagtctaact 6001 cccgtgtccc caaccccata cagagtatgg tcatttcgcc tgatcaggcc cagaataccc 6061 aatttcagaa tggccgctgc accaccgatg ggcagctctt gggtacaaca cctgtctcag 6121 ttagtcagat cttaaagttt agaggaaagg tgtcacctgg ttctaaggtc atcaatctca 6181 ctgagttaga tggttcccct tttctggctt ttgaggcccc tgcgcccacg ggctttcctg 6241 acttgggaac ttgtgattgg catgttgaat taagccttaa ctcaaatagt caaagttctg 6301 gcaacccaat tgtactaaga gacatacaac caaattcttc agattttgtc ccacacttgg 6361 gcagtgtggc tgtcaccgtt gcaattgaaa cagctgggga ttatactggt acaatacaat 6421 ggatctctca gccatccaat gtctccccag ttcccaatgt caacctttgg actatcccta 6481 actatggatc aagtttggca gaagcctccc aattggcccc cgtagtgtac cctccgggat 6541 ttggtgaagc tgtagtgtac tttatgtctc acgtaccagg cccaaacact gaacacaagc 6601 ccaatctggt accctgccta cttccacaag agtttataac tcattttgtc agtgagcaag 6661 ccccacccat gggtgaggca gctcttatcc attatgtgga cccagacacc aaccgtaatc 6721 taggtgagtt caaactgtat cctgaaggtg ttatcacctg tgtgccaaat ggcactggtc 6781 cacaacagct ccccctcaat ggggtctttg tctttgcttc ctgggtttct agattttatc 6841 aattaaagcc tgtgggaacg gccagttcgg ccagaggtag gcttggagtc aggagataat 6901 ggctcaagcc atcattggag ccattgctgc atcagcggct ggaagtgccc ttggagctgg 6961 tatccaagca ggtgctgagg ccgccctcca gagccagagg ttccagcagg accttaccct 7021 tcaacaaaat tcttttaaac atgataagga aatgttgtca tatcaagttg aaatgtctaa 7081 tgctttgtta gctaaaaatc ttaatactcg ctatgctttg ctccaatctg gaggtctgtc 7141 tagtgctgat gctgctcgtg ctgtagcagg tgcgcctgtt acaaggattg ttgattggaa 7201 tggcacgaga gtggcagctc caaactcttc tgcaacaact ctcagatctg gtggatttat 7261 gtctgttcct atacctattc aacccaaaca aaagccctct accatctcag ggtttaataa 7321 tccagcatat ggagaaacta tgtcaagagt ttcctcctgg gtccaatccc agaattcaag 7381 tgttagaagt gtgcctcctt ttcatagttc tgccctcagg actgtttggg ttacaccacc 7441 aggttcaact tctacttctt catctgtttt atccgtgcct atgggcgtgt ttaacaccga 7501 taggcttccc ctattcgcaa ataggagatg atattgttgt aataagaata acaatgtgag 7561 catcttattc aatttggtct aattagttta ataattaggt ttaatttgga caattg //