Typing tool
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Typing tool
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Complete norovirus genomes
| OP723154 | GI.5 | |
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| GI.P4 |
ORF1: 1..5284
ORF2: 5268..6899
ORF3: 6899..7531
LOCUS OP723154 7584 bp RNA linear VRL 01-FEB-2023
DEFINITION Norovirus GI isolate MUR52 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OP723154
VERSION OP723154.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7584)
AUTHORS Alarcon-Linares,E., Moreno-Docon,A., Perez-Serna,L., Camacho,J.,
Sanchez Rodriguez,D., Gutierrez-Martin,M.L., Cabrerizo,M. and
Fernandez-Garcia,M.D.
TITLE Whole-Genome characterization of a Rare Recombinant GI.5[P4]
Norovirus causing a large foodborne outbreak of gastroenteritis in
a hotel, Spain, 2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7584)
AUTHORS Fernandez-Garcia,M.D.
TITLE Direct Submission
JOURNAL Submitted (26-OCT-2022) ENTEROVIRUS AND VIRAL GASTROENTERITIS,
INSTITUTO DE SALUD CARLOS III, Ctra. Majadahonda-Pozuelo, Km 2,
MAJADAHONDA, MADRID 28220, Spain
COMMENT ##Assembly-Data-START##
Assembly Method :: Metaspades v. v3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7584
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="MUR52"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="Spain: Murcia"
/collection_date="2021"
/note="genotype: GI.5[P4]"
gene <1..5284
/gene="ORF1"
CDS <1..5284
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UYQ90724.1"
/translation="IKNRFFTRLKNLGSNNKPIKIENTHMALNLISRGPSPIPQDKPP
KGQRDKPPRNVAETQQAMGWVDPPMDQNLPTWEELSQTEKQEILENNSNWFDAGGLAP
ASIPTGYVKNTEQQPPDHQVKWSASNGVDLGVDNLTTVSGPAWNLCPMPPIDQRNNGP
AKEPLIGDMIEFYEGHIYHYAIYIGQGKTVGVHSPQAAFSIARITIHPIAAWWRVCYV
PTPDQRLNYDQLKELENEPWPYAAVTNNCYEFCCRILNLQDSWLERRLVTSGRFNHPA
QDWSRDTPDFQQDSKLEIVRDAVLAAINGLVSKPFKDLLNKLKPLNVLNLLSNCDWTF
MGVVETIILLMELFGIFWNPPDVSSFIASLLPDMHLQGPEDLAKDLIPLVLGGVGLAI
GFTKDKVTKVMKSAVEGLRAATQLGQYGLEIFAVLKKYFFGGDQTDKTLKDIETAVID
MEVISTTAVTQLVRDKQAARTYMNILDNEEEKARKLSVRHADPHVVSTTNALISRISL
ARSALAKAQAEMTNRVKPVVIMMCGPPGIGKTKAAEYLAKRLANEIRPGGKVGLVPRE
AVDHWDGYHGEEVMLWDDYGMSKIADDCNKLQAIADTAPLTLNCDRIEKKGLQFVSDA
IVITTNAPGPAPVDFVNLGPVCRRVDFLVYCTAPDVEQTRRTNPGDTGALKDCFKSDF
SHLKMELAPQGGFDNQGNTPFGKGTMRPTTLNRLLIQAVALTMERQDEFQMQGQVYDF
DADRISAFTSLARANGLGIISMASLGKKLRGVDSDHGLKNALSGYTITPCSIKWQARV
YDIESDGSNVRIKENTSAQTQRQQSIDTAALALTRLKAARAAAYAACIQSAITTILQM
AGSAIVINRAVKRMFGAHSSTIALEGPPREHRCRAHLVKAAGGGPIGHDDVIDKYGLC
ETEEEGTSEEISVELPTATSEGKNKGKTKKGRGRRANYNAFSRRGLSDEEYEEYKKIR
EEKNGNYSIQEYLEDRQRYEEELAEVQAGGDGGIGETEMEIRHKIFYKSKKGRQNERR
QLGLVTGSDIRKRKPIDWTPPKNDWADDNREVDYNEKLSFEAPPTLWSRVVRFGSGWG
FWVSPTVFITTTHVIPSGAREFFGEPIESIAVHRAGEFTQFRFSHKVRPDLTGMVLEE
GCPEGVVCSILIKRDSGELLPLAVRMGAIASMKIQGRLVHGQSGMLLTGANAKGMDLG
TLPGDCGAPYVYKRNNDWVVCGVHAAATKSGNTVVCAVQAGEGETTLEGGDKGHYAGH
EIIKHSKGPALSTKTKFWRSTPEPLPPGVYEPAYLGGRDPRVKSGPSLQQVLRDQLKP
FAEPRGRMPEPGLLEAAVETVTSMLEQTMDTPTPWSFSDACQSLDKTTSSGHPYHKRK
NDDWNGTSFVGELGEQAAHANNMYELGKSMKPLYTAALKDELVKPEKIYQKIKKRLLW
GADLSTVIRAARAFGPFCDAIKSHVIKLPIKVGMNSIEDGPMIYAEHAKYKNHFDADY
SSWDSTQNRQIMTESFAIMCRLTASPELASVVAKDLLAPSEMDVGDYIIRVKEGLPSG
FPCTSQVNSINHWLITLCAMSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIDFDPARLT
QVLKEYGLRPTRPDKSEGPIILRRQVDGLVFLRRTISKDAAGFQGRLDRGSIERQLWW
TRGPNHDDPSETLIPHPQRKVQLISLLGEASLHGEKFYRKISSKVIQEIKTGGLEMYV
PGWQAMFRWMRFHDLGLWTGDRNLLPEFVNDDGV"
mat_peptide <1..1114
/gene="ORF1"
/product="p48"
mat_peptide 1115..2203
/gene="ORF1"
/product="NTPase"
mat_peptide 2204..2806
/gene="ORF1"
/product="p22"
mat_peptide 2807..3214
/gene="ORF1"
/product="VPg"
mat_peptide 3215..3757
/gene="ORF1"
/product="Pro"
mat_peptide 3758..5281
/gene="ORF1"
/product="RdRp"
gene 5268..6899
/gene="ORF2"
CDS 5268..6899
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYQ90725.1"
/translation="MMMASKDAPPSADGANGAGQLVPEVNNAEPLPLDPVAGASTALA
TAGQVNMIDPWIFNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLAQMYNG
WVGNMRVRLILAGNAFTAGKVIICCVPPGFQSRTLSIAQATLFPHVIADVRTLEPIEI
PLEDVRNTLYHNNDNQPTMRLLCMLYTPLRTGGGSGGTDAFVVAGRVLTCPSPDFNFL
FLVPPTVEQKTRPFSLPNIPLHLQSNSRVPNPIQSMVISPDQAQNTQFQNGRCTTDGQ
LLGTTPVSVSQILKFRGKVSPGSKVINLTELDGSPFLAFEAPAPTGFPDLGTCDWHIE
LSLNSNSQSSGNPIVLRDIQPNSSDFVPHLGSVAVTVAIETAGDYTGTIQWISQPSNV
SPVPNVNLWTIPNYGSSLAEASQLAPVVYPPGFGEAVVYFMSHIPGPNTEHKPNLVPC
LLPQEFITHFVSEQAPPMGEAALIHYVDPDTNRNLGEFKLYPEGVITCVPNGTGPQQL
PLNGVFVFASWVSRFYQLKPVGTASLARGRLGVRR"
gene 6899..7531
/gene="ORF3"
CDS 6899..7531
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYQ90726.1"
/translation="MAQAIIGAIAASAAGSALGAGIQAGAEAALQSQRFQQDLTLQQN
SFKHDKEMMSYQVEMSNALLAKNLNTRYTLLQSGGLSSADAARAVAGAPVTRIVDWNG
TRVAAPNSSATTLRSGGFMSVPIPIQPKQKPSTISGFNNPAYGETMSRVSSWVQSQNS
SVRSVPPFHSSALRTVWVTPPGSTSTSSSVSSVPMGVFNTDRLPLFANRR"
ORIGIN
1 tataaagaac cgcttcttca caagattgaa gaatttaggt tctaataaca agcccataaa
61 aattgagaac acccacatgg cccttaactt aattagtagg ggcccatctc caattccaca
121 ggacaagccc ccaaaaggcc agagggataa acccccaagg aatgtggctg agacccagca
181 ggcaatgggc tgggtcgacc cccccatgga ccaaaatcta ccaacctggg aggagttgag
241 ccaaacagaa aaacaagaga tactcgaaaa caattcaaat tggtttgatg ctggtggttt
301 ggcaccagct agcatcccaa ctggttatgt aaagaacaca gaacaacaac cccctgatca
361 ccaagtcaaa tggagtgcca gtaatggggt tgatcttggg gtagacaatt tgacaactgt
421 gtcaggtcca gcatggaatc tgtgccccat gccaccaatt gatcaacgca acaatggccc
481 agcgaaggaa ccacttattg gtgacatgat agaattctat gaggggcaca tttaccatta
541 tgcaatatac attggacaag gaaaaactgt tggggttcac tcaccccaag cggccttttc
601 aatagccagg ataactatac accccatcgc cgcttggtgg agggtttgtt atgtgccaac
661 acctgatcag aggttgaatt atgaccaact caaagaactt gagaatgagc catggccata
721 tgctgcagtt actaataatt gttatgagtt ctgctgcagg attctcaatc ttcaggactc
781 ttggttggaa cgtcgcttgg tcacatctgg ccgtttcaac cacccagcac aagactggtc
841 cagggacacg cctgacttcc agcaagatag caagttagaa atagtcaggg atgccgtgct
901 tgctgctatc aatggcttgg tatcaaaacc ttttaaggac ctcctaaata aacttaagcc
961 actcaacgta ctcaacttac tctctaactg tgattggaca tttatggggg tggttgagac
1021 gataatatta cttatggagt tgtttgggat cttctggaat ccccctgatg tgtccagttt
1081 catagcctca ctattacctg atatgcactt gcaggggcca gaagatctgg ctaaagactt
1141 gataccgttg gtattggggg gtgtggggct tgcaattggg ttcaccaagg acaaagttac
1201 aaaagtcatg aagagtgctg ttgaaggact cagggcagcc acacaattag gccagtatgg
1261 cctagagata tttgcagttt taaagaaata tttctttggt ggagatcaaa cagacaagac
1321 cttaaaggac attgagacag ccgtgattga catggaggtc atctcaacaa ctgctgtaac
1381 tcaactagtt agggacaaac aggctgcccg aacctacatg aatatcttag ataatgaaga
1441 agagaaggca agaaagcttt cagttagaca tgcagacccc catgttgtgt ccacgaccaa
1501 tgccctgatc tcacgtattt cattggctcg ttccgcactt gctaaggcac aagctgagat
1561 gactaatagg gttaaaccag tagtgataat gatgtgtggt cccccaggta taggcaaaac
1621 aaaggcagcc gagtaccttg ctaagagact ggctaatgag atacgacctg gaggaaaagt
1681 gggccttgtg ccaagggagg ctgtggacca ctgggatgga tatcatggtg aagaggttat
1741 gctatgggat gactatggta tgtcaaaaat agctgatgac tgcaacaaat tacaggctat
1801 agccgacaca gctccactca ctttgaattg tgaccggatt gagaagaaag ggttacaatt
1861 tgtctctgat gccatagtga taacaacaaa tgccccagga ccagccccag ttgactttgt
1921 caatcttggc ccagtgtgtc ggcgggtaga tttcctggtt tattgcactg cacccgatgt
1981 tgaacagaca cgtcgcacta accctggaga caccggagcc ctcaaggatt gttttaaaag
2041 tgacttctct catttgaaaa tggagttggc tccacagggt gggttcgaca accaaggaaa
2101 cactccattt ggcaaaggaa ccatgcggcc taccacatta aaccgcctcc ttatacaggc
2161 cgtagcacta accatggagc gtcaggatga gttccagatg caaggtcagg tgtacgactt
2221 tgatgctgac aggatctctg ccttcaccag tttagcaaga gccaatggtt tgggtatcat
2281 tagcatggcc tccctaggaa agaaattgag gggtgtggat tcggatcatg gcctcaagaa
2341 tgcactatca ggctatacca taaccccctg tagcataaag tggcaagcta gagtgtatga
2401 cattgaatca gatggctcca atgtgcgcat aaaagaaaac acctcagccc agacacaacg
2461 ccagcaatca attgatacag cagccctggc acttaccaga cttaaagcag cacgggcagc
2521 agcatatgca gcttgcatac aaagcgcaat aacaactatc ctgcagatgg ctgggtcagc
2581 catcgttata aatcgtgctg ttaagaggat gttcggtgca cattcaagca ctatagccct
2641 tgaaggacct ccaagagaac atcggtgcag ggctcattta gtcaaggctg caggtggtgg
2701 gccaataggc catgatgatg tcattgataa atatggccta tgtgagactg aagaagaggg
2761 taccagtgag gagataagtg tagagctacc cactgccact tccgaaggta agaacaaagg
2821 aaagaccaag aaaggaagag gcagaagggc caactacaat gctttttcac ggcgcggcct
2881 gagtgatgag gagtacgagg aatataagaa gatcagggaa gaaaagaatg gcaactacag
2941 cattcaggag taccttgaag acaggcaacg ctatgaagaa gagctcgcag aagtgcaagc
3001 tggtggtgat ggaggcattg gtgagacaga aatggagatc cgacataaaa tcttttacaa
3061 gtctaaaaag ggccgccaga atgaacgccg ccaactaggg ctagtcactg gtagtgatat
3121 tagaaagaga aagccaattg attggacccc ccccaaaaat gattgggcag atgataatag
3181 ggaagtggac tacaatgaaa aactcagttt tgaagcccca ccaacccttt ggagccgcgt
3241 tgtgagattt ggctctgggt ggggcttttg ggtgagcccg actgttttta tcaccaccac
3301 tcatgtcata ccatctgggg cgcgtgaatt ctttggggaa cccatcgagt ccattgcagt
3361 ccaccgtgct ggtgaattca cacaattcag attttcacac aaggtccgcc cggatctgac
3421 tggaatggtg ctggaggaag gttgtcctga gggtgtcgtg tgttctattc tcataaagcg
3481 tgactctggt gagctgctgc cccttgccgt ccgaatgggc gctatagcgt ccatgaagat
3541 tcagggaagg ctagtgcatg gccagtctgg gatgctgctc actggagcta acgctaaggg
3601 gatggattta ggtaccctac caggtgattg tggtgcccct tatgtgtaca aaaggaataa
3661 cgactgggtg gtctgtggtg tacatgcagc cgctacaaag tcaggcaaca ctgtggtgtg
3721 tgctgtccag gctggagagg gtgaaaccac cctagagggt ggtgataaag gccactatgc
3781 aggccatgaa ataatcaagc atagtaaggg cccagctcta tctactaaga ccaagttttg
3841 gaggtcaacc cctgaaccat taccaccagg tgtttatgaa ccagcatatc ttgggggtcg
3901 agatcccagg gtaaaaagtg ggccctctct gcagcaagtc ttgcgtgatc agttgaaacc
3961 atttgctgag ccgcgaggtc gaatgccaga gcctggtcta cttgaggcag ctgttgaaac
4021 tgtcacatcc atgcttgagc aaacaatgga tacaccaacc ccctggtctt tctctgatgc
4081 atgtcaatca cttgacaaga ccacaagttc aggacacccg tatcacaaaa gaaagaatga
4141 tgattggaat ggaacttcat tcgttggaga gcttggagaa caggcagcac atgccaacaa
4201 catgtatgaa ttgggcaaat ctatgaaacc actatacact gcagccctta aagacgagtt
4261 agtcaagcct gagaaaattt atcaaaagat caagaagagg cttctctggg gtgctgatct
4321 ctcaacagtc ataagggctg ccagggcctt tgggcctttt tgtgatgcta taaagtctca
4381 tgttattaaa ctccccatca aagttggtat gaactccata gaagatggcc caatgattta
4441 tgcagagcat gcaaaatata agaaccattt tgatgcagat tattcgtcct gggattccac
4501 gcaaaataga cagatcatga ctgaatcctt tgcaatcatg tgccgtctca cagcatcacc
4561 ggaattggct tctgttgtag ctaaagattt actagcccct tcagaaatgg atgttggtga
4621 ttacatcatc cgtgtaaaag agggcttgcc atcaggattc ccttgcacat cacaggtgaa
4681 tagcataaac cactggctga tcacactgtg tgccatgtct gaagtcacgg gtttgtcacc
4741 tgatgtcata caatcccagt cttacttttc cttctatggt gatgatgaga tagtctctac
4801 agacattgat tttgaccccg ctcgcctcac tcaagtgctc aaggaatatg ggttgagacc
4861 caccagacca gacaagtcag aagggcccat catactcaga agacaggtgg atggtcttgt
4921 gttcttgagg aggacaatct ctaaagatgc tgcgggcttc cagggaaggc tagatagagg
4981 ctcaattgaa agacagctct ggtggactcg aggccctaac catgatgacc ccagtgagac
5041 tctaatccca cacccccaga ggaaagttca gcttatatcc ctccttggtg aggcttccct
5101 ccatggtgag aagttttaca ggaagatctc cagtaaagtt atacaggaga taaaaactgg
5161 tggtttggaa atgtatgtgc caggctggca ggccatgttc cgctggatgc gcttccatga
5221 cctcggattg tggacaggag atcgcaatct cctgcccgaa ttcgtaaatg atgatggcgt
5281 ctaaggacgc cccaccaagc gcagatggcg cgaatggcgc cggtcagctt gtgccggagg
5341 ttaataatgc tgaaccactg ccacttgatc cagtggcggg ggcttccacc gcccttgcca
5401 ctgctggaca agttaatatg attgacccat ggatctttaa taattttgtc caggcccccc
5461 agggtgaatt tactatttct ccaaataata cccccggcga tatcctgttt gatttacaat
5521 taggtccaca tctaaatcct tttctagcac atttggctca gatgtacaat ggctgggttg
5581 gcaacatgcg ggtcaggctc atcttggccg gtaatgcttt cactgctggt aaagttataa
5641 tttgttgtgt tccccctggt tttcaatcta gaaccctctc catagcccag gctacactct
5701 ttccccatgt gatcgctgac gtgagaactc tggaaccaat tgagatccct ttagaagatg
5761 ttaggaatac tctttatcat aataatgaca atcaaccaac aatgcgcttg ctgtgcatgc
5821 tctacacgcc attacgcacc ggtggcggtt ctggtggcac agatgcgttt gttgtagcag
5881 gtcgagtttt aacttgccct agccctgatt tcaatttctt gttcttagtc ccacccactg
5941 tggagcagaa gacacgtccc tttagcctgc ccaatatacc tttacacttg cagtccaact
6001 cccgtgtccc caaccccata cagagtatgg ttatttcgcc tgatcaggcc cagaatactc
6061 aattccagaa tggccgctgc accaccgatg ggcagctctt gggtacaaca cctgtctcag
6121 ttagtcagat cttaaagttt agaggaaagg tgtcacctgg ttctaaggtt atcaatctta
6181 ctgagttaga tggttccccc tttctggctt ttgaggcccc tgcgcccacg ggctttcctg
6241 acttgggaac ttgtgattgg catattgaat taagccttaa ctcaaatagt caaagttctg
6301 gcaacccaat tgtactaagg gacatacaac caaattcttc agattttgtc ccacacttgg
6361 gcagtgtggc tgtcaccgtt gcaattgaaa cagctgggga ttatactggt acaatacaat
6421 ggatctctca gccatccaat gtctccccag ttcccaatgt caacctatgg actatcccca
6481 actatggatc aagtttggca gaagcctccc aactggcccc cgtagtgtac cccccgggat
6541 ttggtgaagc tgtagtgtac tttatgtctc acataccagg cccaaacact gaacacaaac
6601 ccaatttggt accctgccta cttccacaag aatttataac tcattttgtc agtgaacaag
6661 ccccacccat gggtgaggca gctcttatcc attatgtgga cccagatacc aaccgtaatc
6721 taggtgagtt caaactgtat cctgaaggtg ttatcacctg tgtgccaaat ggcactggtc
6781 cacaacaact ccccctcaat ggggtctttg tctttgcttc ctgggtttct agattttatc
6841 aattaaagcc tgtgggaacg gccagtttgg ccagaggtag gcttggagtc agaagataat
6901 ggctcaggct atcattggag ccatcgctgc atcagcggct ggaagtgccc ttggagctgg
6961 tatccaagca ggtgctgagg ccgccctcca gagccagagg ttccaacagg accttaccct
7021 tcaacaaaat tcttttaaac atgataagga aatgatgtca tatcaagttg aaatgtctaa
7081 tgctttgtta gctaaaaatc ttaatactcg ctatactttg ctccaatctg gaggtctatc
7141 tagtgctgat gctgctcgtg ctgtggcagg tgcgcctgtt acaaggattg ttgattggaa
7201 tggcacgaga gttgcagccc caaactcttc tgcaacaact ctcagatctg gtggatttat
7261 gtctgttcct atacctattc aacccaaaca aaagccctct accatctcag ggtttaataa
7321 tccagcatat ggagaaacta tgtcaagagt atcctcctgg gtccaatccc agaattcaag
7381 tgttagaagt gtgcctcctt ttcatagttc tgccctcagg actgtttggg ttacaccacc
7441 aggttcaact tctacttctt catctgtttc atctgtgcct atgggcgtgt ttaacaccga
7501 taggcttccc ctattcgcaa ataggagatg atattgttgt aataagaata acaatgtgag
7561 catcttattc aatttggtct aatt
//