Typing tool
|
Complete norovirus genomes
OP712199 | GII.17 | ||
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GII.P17 |
ORF1: 5..5113 ORF2: 5094..6710 ORF3: 6710..7489LOCUS OP712199 7581 bp RNA linear VRL 29-OCT-2022 DEFINITION Norovirus GII isolate GII/Hu/RU/2022/GII.17[P17]/Nizhny_Novgorod755, complete genome. ACCESSION OP712199 VERSION OP712199.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7581) AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and Novikova,N.A. TITLE Whole genome sequencing of noroviruses, detected in Nizhny Novgorod, Russia JOURNAL Unpublished REFERENCE 2 (bases 1 to 7581) AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and Novikova,N.A. TITLE Direct Submission JOURNAL Submitted (22-OCT-2022) Laboratory of Molecular Epidemiology of Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny Novgorod 603950, Russia COMMENT ##Assembly-Data-START## Assembly Method :: SPAdes v. v. 3.11.1. Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7581 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="GII/Hu/RU/2022/GII.17[P17]/Nizhny_Novgorod755" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="Russia: Nizhny_Novgorod" /collection_date="24-Mar-2022" /note="genotype: GII.17[P17]" gene 5..5113 /gene="ORF1" CDS 5..5113 /gene="ORF1" /codon_start=1 /product="nonstructural polyprotein" /protein_id="UYO73030.1" /translation="MKMASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGAR SKQPPPGETKQTQRPPRPPTPELVKKIPPPPPNGEDEPKIAYKVGEGVSGLPDLTTVA QPDAQSTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPA AISLAKIELTPLSLYWRVVYTPQYLIAPETLKNLNGEAFPYTAFDNNCYAFCCWVLDL NDSWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDV IGKLKPLNIMNILATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQG PEDLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKW FFPKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARK LSSKSASPDIVGTVNALLARIAAARSLVHKAKEELSSRQRPVVVMLSGRPGIGKTHLA RELAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELA DTCPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPD IEKAKRDFPGQPDMWKDHYRSDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLI ARASGLLHERMDEFELQGSGLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSV KTLDELKQAIKNITIKKCQIVYNGCTYTMESDGRNKVVVEKVQNATVQTNNELAGALH HLRSARIRYYVKCFQEAIYSLLQIAGAAFVTTRIVRRMNISNLWSKPPVEEGDEPEDK GGCPKPRDEDDLTIDSKDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREE RNGKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRREERATL GLVTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFW VSPSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGA PEGTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTT PGDCGCPYIYKRGNDFVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAP ILGPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPF TEPRGKPPKPSVLESAKKTIINVLEQTIDPPEKWSYAQACASLDKTTSSGYPHHVRKN DYWSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWG SDLSTMIRCARAFGGLMDELKANCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYS RWDSTQQRAVLEAALEIMVRFSAEPQLAQIVAGDLLSPSVVDVGDFKIVINEGLPSGV PCTSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTA KLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWT RGPNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVP RQESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide 5..1003 /gene="ORF1" /product="p48" mat_peptide 1004..2101 /gene="ORF1" /product="NTPase" mat_peptide 2102..2638 /gene="ORF1" /product="p22" mat_peptide 2639..3037 /gene="ORF1" /product="VPg" mat_peptide 3038..3580 /gene="ORF1" /product="Pro" mat_peptide 3581..5110 /gene="ORF1" /product="RdRp" gene 5094..6710 /gene="ORF2" CDS 5094..6710 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UYO73031.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHIIVDVRTLEPIMIPLPD VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTLDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAETDNPDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM ASQRNVGNDAPGSTRAHEAVISTYSPRFVPKLGSVNFKSNDNDFQLQPTRFTPVGIND DDDHPFRQWELPDYSGVLTLNMNLAPPVAPNFPGEQLLLFRSSVPCSGGYNQGIIDCL IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ" gene 6710..7489 /gene="ORF3" CDS 6710..7489 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UYO73032.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAISQKIDFENNKQLQSA SFQHDKEMLQAQVNATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHIPSPSAPQSKPAKPRSLGSSSSSSSVYSMSTQLT SLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRVRGESRV" ORIGIN 1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gctggcaaaa acaacaacaa 61 cgacaaggaa aaatcttcaa gtgacagctt gttttctaac atgactgtta cttttaagaa 121 agccctcggg gcgcggtcta aacagccgcc cccgggagaa acaaaacaaa cacaaagacc 181 accaaggcca ccgacaccgg aattggtgaa gaagataccc ccaccccccc ccaatggcga 241 ggatgaacca aagatagcgt ataaggtggg agaaggtgtg tctgggctgc ccgacttgac 301 aaccgtggca caacctgacg cacagagcac agcctacagt gtccccccac ttagccagag 361 agaggtcggc gaagctaaag aaccgttgcc tggctccatt ctggaaatgt gggatggtga 421 gatctaccac tatgggctgt atgttgagcg ggggcatgta ctgggagtgc acaaaccacc 481 tgccgcaata agccttgcca aaattgaatt aacaccgctg tctctctact ggagagtggt 541 ttacactccc caatacttga tagctccaga gacccttaag aatttaaatg gagaggcttt 601 cccatacacg gcctttgaca acaactgtta tgccttctgt tgttgggtct tagacctcaa 661 cgactcctgg cttagcagaa gaatgatcca aagaacaact ggattcttca gaccgtatca 721 ggactggaac agaaaaccct tgccaaccat ggatgaacca aaaatcaaga aggccgcgaa 781 tgctgttctg tgtgctctct cctcactctt cactaggccc atcaaagatg tcattggaaa 841 gctcaaacca ctgaacatta tgaacatact ggcaacttgt gattggactt ttgcgggcat 901 agtggaatcc atgatccttc ttgctgagct ctttggggtg ttctggacgc ccccagatgt 961 gtctgcaatg attgctccct tactcggtga ctacgagatg caaggccccg aagacctggc 1021 cgtggaactt gtgcccgtgg taatgggagg aataggtttg gtgttaggat tcaccaagga 1081 aaagatcggc aagatgcttt catcagctgc gaccacactc agggcctgca aggatctagg 1141 atcttatggg ttggagatac tcaaactggt catgaagtgg ttcttcccca agaaggagga 1201 ggccaacgag ttagccatgg tgagggccat tgaggatgca gttctggatt tggaggcaat 1261 agaaaacaac cacatgacca ctctccttaa ggacaaagac agcctggcca catacatgag 1321 gactcttgac ttggaagaag aaaaagcaag gaaactgtca tccaaatcgg cgtcacctga 1381 catcgtgggc acagtaaacg cattattggc aaggatagca gccgccaggt cactggtcca 1441 caaggctaag gaggagctct cgagcagaca gaggcctgtt gttgtaatgt tatcaggtag 1501 gccaggtata ggaaagaccc atctggccag agagctagcc aagaaggttg cgtcaacact 1561 gtcaggcgac caaaggattg gactgatacc tagaaatggc gtcgaccatt gggacgccta 1621 caaaggagag cgggtggttc tgtgggatga ctatggcatg agcaacccta tacaggacgc 1681 actgaggctc caagaattgg ctgacacctg tcctctgacc ctaaattgtg acaggattga 1741 aaacaaagga aaagtgttcg acagtgacgc cataattata acaaccaacc tcgcaaaccc 1801 agcaccactg gattatgtca actttgaggc ttgttctaga cgcatagact tcttggtgta 1861 tgcagacgca cctgacatcg agaaggctaa acgtgacttc cctggccaac cagatatgtg 1921 gaaagaccat tacagatcag acttctcaca cattaaactt cagctggcac cacagggagg 1981 ctttgataag aatggcaaca ccccacatgg caaaggtgtg gttaaatctc tgacgattgg 2041 ttctctgatc gccagggctt ctggcttgct ccatgagaga atggatgaat ttgagctcca 2101 aggctctggc ttaccaacct tcaatttcga ccgtaacaaa gtcgccgcct tcagacaatt 2161 ggcagctgaa aacaaatatg gtcttatgga cacactgagg gtcggcaacc aactgaaaag 2221 tgtcaaaact ctggatgagc tgaagcaggc tataaagaac atcaccatca agaagtgcca 2281 gatagtgtac aatggatgca cctacaccat ggaatctgat gggaggaaca aggttgtggt 2341 tgaaaaggtc caaaatgcaa cagtccaaac caacaatgaa cttgcaggag cactccacca 2401 cctgagatct gcaaggataa ggtattatgt taaatgtttc caagaagcta tttactctct 2461 actccaaatt gctggtgcag ccttcgtcac cacacgcatc gtgaggcgca tgaacatctc 2521 aaacctctgg tcgaagccac ccgtcgaaga gggtgatgag cctgaagaca aaggggggtg 2581 ccccaagccc agggatgaag atgacctcac tattgactct aaagacatta aagcagaagg 2641 gaagaagggc aagaacaaat ctggccgggg caagaaacac acagctttct catccaaggg 2701 cctcagtgat gaagagtacg atgagtacaa gagaatcagg gaggagagga atggcaaata 2761 ctcaattgaa gaatacctcc aggataggga tagatactat gaagagcttg ccattgctaa 2821 ggccactgag gaagacttct gtgaagagga ggaaatcaaa attcgccaga gaatcttccg 2881 gcccaccagg aagcaacgga gagaggaaag agccacgctt gggcttgtca caggatcgga 2941 aatcagaaag aggaacccag atgactttaa gccaaaagga aaattgtggg ctgatgacaa 3001 cagaagtgtg gactacaatg agaggataga ttttgaggct cccccgagtg tttggtctag 3061 gatagtcaac tttggtacag gatggggatt ctgggtctcc ccaagtctct ttataacttc 3121 aacacatgtc ataccaaaag gaatcactga ggcctttgga gttcccatta accaaattca 3181 aattcacaaa tctggagagt tttgccgctt gcggtttcca aaaccaatca ggccagacgt 3241 gagtggaatg atcttggaag agggtgcccc tgaaggcact gttgtgtcca ttctcatcaa 3301 gaggacaaca ggggaactga tgcctctcgc agttagaatg ggaactcatg ccacaatgaa 3361 aatccaaggt agaacggtgg gtggtcaaat gggcatgctt ctcactggct caaacgctaa 3421 aagcatggac ctaggcacaa caccaggtga ctgtgggtgc ccatacatat acaaaagggg 3481 caatgacttc gtggtcattg gggtgcacac tgcagcagcc cgtggaggca acacggtcat 3541 atgtgccaca cagggaagtg aaggcgaagc caccctcgaa ggaggtgaca acaagggcac 3601 ctattgtgga gcccccatct tgggacctgg caacgcacca aaattgagca caaaaacaaa 3661 attttggaga tcttctaacg cgccgcttcc tccaggtacc tatgaaccag cataccttgg 3721 tggaaaagac ccgcgtgtga agggaggccc atctctacaa caggttatga gagatcaact 3781 taaacctttt acagagccca gggggaagcc accaaaacca agtgtcctag aatcagcaaa 3841 gaagaccatc attaatgttc tggagcaaac cattgacccc cctgaaaagt ggtcatatgc 3901 ccaagcttgt gcatccctcg acaagacaac ctccagtgga tacccgcatc acgtccggaa 3961 gaatgactat tggagtggtg aatccttcac ggggaaactt gcagaccagg cctcaaaagc 4021 aaaccttatg tatgaggaag gcaagcacat gcaaccagtt tacaccgcag cactcaaaga 4081 cgagctcgtg aaaactgaca aaatttatgg caagatcaag aaaagactcc tgtggggctc 4141 tgacctatcc accatgattc gatgcgccag ggcatttggt ggcctcatgg atgagctcaa 4201 agcaaattgt attacactcc ctgtcagagt tggtatgaac atgaatgaag atggccccat 4261 aatatttgaa aagcactcca ggtacaggta ccactatgat gctgattact cccgctggga 4321 ttccacacaa cagcgggcag tgctggaagc ggcacttgaa atcatggtga gattttctgc 4381 tgagccacag ttggcgcaaa tagtggcagg ggacctgcta tcaccaagtg tggttgatgt 4441 gggcgatttc aaaattgtta tcaatgaagg cctaccatct ggcgtgcctt gcacttcaca 4501 atggaattcc attgcccact ggttactcac cctgtgtgcc ctgtctgaag taacaggact 4561 aggccctgac atcatacaag ccaactccat gtactctttc tatggtgatg atgagattgt 4621 gagcacagac ataaaattag acccagagaa attgactgca aaactcaaag aatatggtct 4681 taaacctacc cggcctgaca agactgaggg gccactggta attagtgagg acctgaatgg 4741 gttgactttc ctccgccgaa cagtcacccg cgatccagcg ggttggtttg gaaagttgga 4801 ccaaaactcc atcctcaggc agctgtactg gacaagggga cccaaccatg aagaccccag 4861 tgagactatg ataccacacg cacagagacc tgtgcagctc atggcactgc taggagagtc 4921 ctccctacat ggaccctcat tttacagcaa ggttagcaag ctggtcatat ctgaacttaa 4981 agagggagga atggattttt atgtgcccag acaagagtca atgttcaggt ggatgaggtt 5041 ctcagatcta agcacatggg agggcgatcg caatctggct cccagttttg tgaatgaaga 5101 tggcgtcgaa tgacgccgct ccatctaatg atggtgctgc tggtctcgta ccagagggca 5161 ataatgagac ccttccccta gaaccagttg cgggcgcagc tatagccgca cccgtcactg 5221 gccaaaacaa tataattgac ccctggatta gaacaaattt tgtgcaagca ccaaatggag 5281 agttcacagt gtcacccaga aactctcctg gagaaatttt actaaaccta gagttgggcc 5341 ctgatttgaa cccttacttg gctcatttgt caaggatgta caatgggtac gctggtggag 5401 ttgaagtcca ggttctcctg gcagggaacg cgttcactgc cgggaagatc ctcttcgccg 5461 ctgtcccgcc aaatttccca gtggaattct taagcccagc ccagattaca atgctcccac 5521 atataatagt agatgttagg actcttgaac caattatgat cccattacct gatgttagga 5581 acacattctt ccactataat aaccagccca acagccgcat gagattagtg gctatgctct 5641 atacccccct tagatctaat ggctcaggtg atgatgtttt cactgtttct tgcagggtct 5701 tgactaggcc tactcttgat tttgagttca cttatctagt gccaccctct gttgaatcta 5761 agactaagcc cttttcctta cccattttaa ccctttctga gctcacaaat tcgaggttcc 5821 cggtccccat tgattcgctt ttcaccgccc agaataatgt gttgcaggtg cagtgtcaaa 5881 atggcaggtg cacacttgac ggtgagctac aaggtacaac ccagttgctc ccatctggca 5941 tctgtgcgtt cagaggacgg gtgacagcag aaactgacaa tcctgataag tggcacatgc 6001 aactgcaaaa cctcaatggc acaacgtatg acccaactga cgatgtgcca gccccactgg 6061 gtacacctga cttcaagggc gtcgtgtttg ggatggcaag ccaaagaaat gtgggtaacg 6121 atgcgcccgg ctcaaccagg gctcatgagg cggtgatttc aacctacagc cccagatttg 6181 ttcccaaatt aggctctgtc aattttaaaa gtaatgacaa tgatttccaa ttgcagccaa 6241 caagattcac accagtgggc attaatgatg atgatgacca cccgttcaga caatgggaac 6301 tgccagacta ttcaggggtg cttaccttga atatgaacct tgcccccccg gttgctccaa 6361 atttccctgg tgaacaatta ttactcttca gatcttccgt gccatgttca ggaggttaca 6421 accaaggtat tatagattgt cttatccccc aagaatggat ccaacacttc taccaggaat 6481 cagcaccttc tcagtcagac gtggccctga tcaggtacgt caaccccgac acgggtcgca 6541 cactgtttga ggcaaaattg cacagatctg gctatatcac tgtggctcac tctggagact 6601 atcctcttgt tgttccggct aatggatact ttagatttga ctcttgggta aatcagtttt 6661 actcactcgc cccaatggga actgggaatg ggcgaaggag ggctcagtaa tggctggagc 6721 tttcattgca ggattggcgg gtgacatgct cacgtcatcc gtgggctccc tggtgaacgc 6781 aggggcaaac gccatcagcc aaaagataga ctttgaaaac aacaaacaac tccagtctgc 6841 ttcctttcaa catgataaag agatgctcca agcgcaggta aatgcaacca agcagctgca 6901 atctgagatg atagccctaa aacagggggt tttggccgca ggcggctttt cccccactga 6961 tgcagcgagg ggggccatcg gtgcacccat gacaaaggtg cttgactggt ctggcactcg 7021 atattgggct cccaattcca caaagacaac tggttattcg gggcaattca cctcttcacc 7081 tgtgcacata cccagcccga gtgctccaca atcaaaaccc gcaaagccca gatctctagg 7141 ttcttcttct tcgtctagta gtgtttatag tatgtctacc caattaactt ctctaacatc 7201 tggctcttct agtaatgctt cttctgcttc tacaaaattg acaaatttaa gctctggctc 7261 ctctcaaaac aggacagcag agtgggtgaa ccaacagaga agtctcagcc ctttcatgag 7321 tggcgcactc aatatctcac atgtcacgcc accttcaagt agggcctcca gttctgggac 7381 ggtctcaacc gtacccaagg aagttttgga ctcctggaca tctgcattca acacacgcag 7441 acagccgctc ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaaat 7501 aattggctat aatatgattt ctttttaaaa tttggctaat ttgtatcttt taaaaaaaaa 7561 aaaaaaaaaa aaaaaaaaaa a //