Typing tool
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Typing tool
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Complete norovirus genomes
| OP712197 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS OP712197 7586 bp RNA linear VRL 29-OCT-2022
DEFINITION Norovirus GII isolate GII/Hu/RU/2022/GII.3[P12]/Nizhny_Novgorod219,
complete genome.
ACCESSION OP712197
VERSION OP712197.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7586)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Whole genome sequencing of noroviruses, detected in Nizhny
Novgorod, Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7586)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2022) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v. 3.11.1.
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7586
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2022/GII.3[P12]/Nizhny_Novgorod219"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Russia: Nizhny_Novgorod"
/collection_date="27-Jan-2022"
/note="genotype: GII.3[P12]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UYO73024.1"
/translation="MKMASNDASAAAVANSNNDNAKSSSDGVLSSMAVTFKRALGARQ
KQLPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVCQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVIMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVRVDRVQNTTVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTVPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPRPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6731
/gene="ORF2"
CDS 5085..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYO73025.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6731..7495
/gene="ORF3"
CDS 6731..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYO73026.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPSDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKINQSPRPTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gttgctaata gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcaaaaac agcttccccc gagggaaata ccacaaaggc caccacggcc
181 acccacccca gaactggtca agaagatccc ccctccccca cccaatgggg aggatgagcc
241 agtggtctct tatagtgcca aagatggcgt ttctggtttg cctgaactta ccactgtctg
301 tcaaccggat gagaccaaca cggcgttcag tgttccccct ctcaaccaga gggagaacag
361 ggacgccaag gagccgctga ccggaactat cctggaaatg tgggacgggg aaatctatca
421 ttatggtctg tatgtggagc gaggcctcgt actcggtgtg cacaaaccac cagctgccat
481 cagtcttgcc aaggttgaac tagcaccact ctctctgttt tggagaccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agaggacaac tggctttttc agaccttacc aagaatggaa
721 caggaaaccc ctccccacta tggatgactc taaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa aagtaagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttaatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgagct gcaggggcct gaggaccttg cagtagaact
1021 cgtgccagta gtgatgggag ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcgtccgctg cttccacctt aagagcttgt aaagacctcg gtgcatacgg
1141 gctggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 gctagctatg gtgaggtcca tcgaggatgc ggtgctggac cttgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcctggca acctacatga gaacccttga
1321 cctcgaggag gagaaagcca ggaagctctc aaccaagtct gcttcacctg acatcgtggg
1381 cacgattaac gctcttctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggagctc tccagcagac caagacctgt tgttattatg atatcaggca ggccagggat
1501 agggaaaact caccttgcca gggagctggc caagaagatc gcagcttcac tcacagggga
1561 ccagcgcgtg ggtctcatcc ctcgcaatgg cgttgaccac tgggatgcgt acaagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgatg ccctcaggtt
1681 acaggaactt gctgacacct gcccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gatagcgatg ccataatcat caccactaat ctagccaatc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgatatgt ggaagaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagct tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
2101 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtat ggattgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacaag cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaagag ttgacagagt
2341 tcagaacacc actgttcaga ccaacaatga gcttgccggc gcactacacc atcttaggtg
2401 cgccagaatc aggtattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 cgctggggct gcatttgtta ccacacgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggagg acacagagga aatcgctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagttcg tcgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcgttt tcaagcaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaggtatta tgaggaggtg gccattgcca gagcaaccga
2821 agaggacttc tgtgaagaag aagaggctaa gatccgacag aggatcttca gaccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttagtc acaggttctg aaatcaggaa
2941 gaggaaccca gatgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagaaactca actttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtctc ccctagcctg ttcataacat caactcatgt
3121 cataccccag ggcgcacagg agttctttgg tgtatccatc aaacaaatcc agatacataa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaaggaac cgtggtcaca ttactcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccagaat gggaacccat gcaaccatga agatacaagg
3361 gcgcactgtt ggtggtcaaa tgggcatgct tctgacagga tccaacgcca agagtatgga
3421 cctgggcacc acaccaggtg actgtggctg cccctacatt tataagaggg ggaatgacta
3481 cgtggtcatc ggggtccata cagctgccgc ccgtggagga aacactgtca tttgtgccac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 agcaccaatt ttaggtccag gaagtgcccc aaaactcagc accaagacta agttctggag
3661 atcatccacg gtaccactcc cacctggtac ctatgaacca gcttacctcg gtggcaagga
3721 ccccagagtt aagggtggtc cttcactgca acaagttatg agggatcaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaagacc aagtgtgcta gaagctgcca agaaaaccat
3841 tgtcaatgtc ctagaacaga caattgaccc acctcaaaag tggtcgtttg cgcaggcatg
3901 cgcatccctg gacaagacca cttctagcgg ccatccgcac cacatgcgga agaatgactg
3961 ctggaacggg gagtccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aaagtttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 aaccatgatt cggtgtgctc gagcattcgg gggtctaatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgactat tcccggtggg attcaacaca
4321 acaaagagcc gtgttggcag cagccttaga aatcatggtc aaattttccc cagagccaca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actttctgag gtcacaaacc tgtcccctga
4561 cattattcag gctaattccc tcttttcttt ctacggtgat gatgaaattg tgagcacgga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aaaactgaag ggcctcttgt catttccgaa gacctaaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagttc
4801 aatacttaga caaatgtact ggactagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagcg ttctacagca aaattagtaa actggtcatt gcagagttga aggagggtgg
4981 tatggatttt tacgtgccaa gacaagagcc gatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgctac cccatctaat gatggtgctg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcacc ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag aaattcccct ggtgaagtgc tccttaattt ggaattgggc ccagaaataa
5341 atccctatct ggcccatctt gctagaatgt acaatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct ggctgggaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaatttccc gattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgatcg
5521 tggatgtcag gcagttggaa ccagtcaacc tcccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tatacacccc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5701 ctagtcctga attttcattt aatttccttg tgccacccac cgtggagtca aagacaaaac
5761 cttttaccct cccgattctt actatctctg aaatgtctaa ttctaggttt ccagtgccga
5821 ttgattctct gcacaccagc ccaactgaga acattgttgt ccagtgtcaa aatggacgcg
5881 tcactcttga tggcgagttg atgggcacca ctcagctcct acctagtcaa atctgtgctt
5941 tcaggggcgt gctcactagg tcaacaagca gggctagtga ccaggccgac acagcaaccc
6001 ccagattgtt taattattat tggcacatac aattggataa tctaaatgga actccttatg
6061 atcctgcaga agatatacca ggccccctag ggacaccaga ttttcggggt aaagtctttg
6121 gcgtggccag tcaaagaaac cccgatagta caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gttcattaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccatgagt
6301 cagacttcca acaatggtcc ttacccgatt actctggtca gttcactcac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 tgccatcttc tggtgggcga tccaatggga tcctagattg cctggttccc caagaatggg
6481 tccagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctctg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaatta ggttttatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tacacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggtg cttttatagc aggattagct ggtgatatac tcacaaatac
6781 tgtagggtct ttagttaatg caggggctaa tgcaatcaat caaaaagttg attttgaaaa
6841 taataaatat ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacaaat
6901 tgaggcaaca aagagattac aggctgatat gattgccatc aaacaggggg ttttgaccgc
6961 tggcggcttt tccccctctg atgcagctcg cggggcaatt aacgccccca tgacaaaagt
7021 cctagattgg aatggaacaa ggtactgggc accaagcgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag gaccacgccg aattttaaaa taaaccagtc
7141 ccccagaccc acacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7201 tctgagctca cactcgtccg gatcgtcccg atccagcggg tctacagttg ctagctcact
7261 accatcttcc aacaggacta gggactgggt caatcagcaa aatttcaatt tggaaccaca
7321 catgcctggg tcacttagga cggcttttgt cactccacca tctagtacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaagtgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacaa ccgctattcg cacaccttcg tagaaggggg gagtcaaatg tttagtgaaa
7501 aggttatctt aaatttgatt taaattgaat ttgatttgga atcttttaaa aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaa
//