Typing tool
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Typing tool
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Complete norovirus genomes
| OP712196 | GII.6 | |
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| GII.P7 |
ORF1: 5..5098
ORF2: 5079..6722
ORF3: 6722..7498
LOCUS OP712196 7587 bp RNA linear VRL 29-OCT-2022
DEFINITION Norovirus GII isolate GII/Hu/RU/2022/GII.6[P7]/Nizhny_Novgorod14,
complete genome.
ACCESSION OP712196
VERSION OP712196.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7587)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Whole genome sequencing of noroviruses, detected in Nizhny
Novgorod, Russia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7587)
AUTHORS Epifanova,N.V., Alekseeva,A.E., Brusnigina,N.F., Oparina,S.V. and
Novikova,N.A.
TITLE Direct Submission
JOURNAL Submitted (22-OCT-2022) Laboratory of Molecular Epidemiology of
Viral Infections, I.N. Blokhina Nizhny Novgorod Research Institute
of Epidemiology and Microbiology, Malaya Yamskaya, 71, Nizhny
Novgorod 603950, Russia
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. v. 3.11.1.
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7587
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="GII/Hu/RU/2022/GII.6[P7]/Nizhny_Novgorod14"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Russia: Nizhny_Novgorod"
/collection_date="01-Jan-2022"
/note="genotype: GII.6[P7]"
gene 5..5098
/gene="ORF1"
CDS 5..5098
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UYO73021.1"
/translation="MKMASNDASAAFGSQNSVNDSNNTAPSSKEEAGAFSNIKVGFKK
MLGAVPKGTKAPSSDQHCPSVKIGAKTLTVPPEPPNGEDAVQFDAKSETVRGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSSFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
RLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRTRPVVVMISGRPGIGKTHM
ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
EIEKVKRDFPGQPDMWKDHFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGTALKS
VKTLEDLKVALRDVKFNECEIIYRNSKYRVASNGKGSVSVDKVEDQTSQTANEVGAAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQETSESEK
EVAQGKWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGINELFGVEIKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGLDGEAVLEGNENHGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVRKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCITLPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLHQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 5..1006
/gene="ORF1"
/product="p48"
mat_peptide 1007..2104
/gene="ORF1"
/product="NTPase"
mat_peptide 2105..2623
/gene="ORF1"
/product="p22"
mat_peptide 2624..3022
/gene="ORF1"
/product="VPg"
mat_peptide 3023..3565
/gene="ORF1"
/product="Pro"
mat_peptide 3566..5095
/gene="ORF1"
/product="RdRp"
gene 5079..6722
/gene="ORF2"
CDS 5079..6722
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYO73022.1"
/translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
AIDFKGTVFGVASQRNTTGGSIGATRAHEVHIDTTNPRYTPKLGSVLMYSESADFDDG
QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGTGQGRRRVQ"
gene 6722..7498
/gene="ORF3"
CDS 6722..7498
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYO73023.1"
/translation="MAGAFLAGLAGDAITSGVGSLISAGANAINQKVEYDFNKQLQLA
SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
TRYFAPNSMKTTSYSGQFSSNPVHRQPTLTRSESPKIKVNSDSASVYSSATTTPSQST
HSTALTAGSSSSRTTSSSAAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKA
SSYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQI"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccttt ggcagccaaa actctgtcaa
61 tgacagtaac aacaccgctc cttctagtaa agaagaggct ggtgcatttt ccaacatcaa
121 agttggtttt aagaaaatgc tgggtgccgt tcccaagggg accaaagcac ccagcagtga
181 ccagcactgc ccctcagtta agatcggggc caagacatta acagttcccc ctgagccccc
241 aaacggtgaa gacgccgtgc agtttgacgc gaagtcagaa actgtgcgcg ggctaccaga
301 cttgacaacg gtgcagaatg aacatgaaaa cacaccatac actgtccctc cattgagtga
361 aagggagcac agaccagcca ctgaaccgct tcctggcaca atactcgaga tgtgggatgg
421 tgaattctac cattactctg tgtacgtcag cggtggcaaa gccctagggg tccacaagcc
481 ccctgcagcg ataagcctcg caacgataga gctcacaccc atatctctct attggaggcc
541 cgtttacacc cccaactatc tggtctgtcc agacacgttg aagggccttg ctggtgagaa
601 gttcccctat acggccttca gcaacaactg ttacaacttc tgttgctggg tgcttgagct
661 caatgacacg tggcttagca ggagaagcat ctctaggacc accggcttct tcaaaccata
721 ccagtcttgg aatagaaaac cccttccaac cgttgatgat ggaaagatca aaaaggtggc
781 caacgcaatt ctttgcgcgc ttggatcact gttttcaaaa ccaattaagg acctattggg
841 caaacttaaa ccattgaact tgttacactt gctcgcatca tgtgactgga cgtttgcagg
901 tatagtagag acagtcatcc taatggcgga acttttcaac atcttctgga caccgccaga
961 tgtttccagc ttcatagcct ctctgatagg tgattttgaa ctgcaaggac ctgaggacct
1021 tgctgtggag cttgtccccg tggtcatggg tggcatagga atggttctcg gctttactgc
1081 tgagaagata ggccgcatgc tatcgtccgc tgcatcaaca ctacgggcat gcaaagactt
1141 ggggaattat gctcttgaca tactgaaact ggttatgaag tggttcttcc caaagaaaga
1201 agagaaagcc gagatggaaa ccctaagggc gattgaggat gccgtcctgg acatggaagc
1261 tataggaaat aaccacctca caaccctcct taaggacaag gatagcctca cggctttcat
1321 gaagactcta gatctagaag aggagaaggc aaggaggctg tccaccaaat catcctcgcc
1381 agacatcgtc ggcactatta atgccatact ggccagaata gctgctgcca ggtccctctt
1441 acataaggct aaagaagaaa tgtttagcag gaccagaccc gtggttgtca tgatctcggg
1501 tagacctggt attggcaaga cccacatggc aagacacttg gctaagagta tcgccaacac
1561 catgagcggc gatcagaggg tgggactcgt cccacgcaac ggggttgatc attgggacgc
1621 ctacagggga gagagggtgg ttctgtggga tgattatggc atgggaaacc ctgtcaaaga
1681 tgccctaaca ctgcaagagt tggccgacac ctgcccagtg actctaaact gtgataggat
1741 tgagaacaaa gggaagatgt ttgacagtga tgtcatcata attacgacca atttagttaa
1801 cccagcgccc ctcgattatg taaacttcga ggcgtgctcc agaagggtcg acttcctggt
1861 ctatgcagaa tcaccagaaa tcgagaaggt taagagagac ttccccggcc aacctgacat
1921 gtggaaagac cattttaagc aagacttttc ccacataaag ctgactctag ccccacaggg
1981 tggatttgac aagaacggca acactccgca tggtaagggc accatgcgat ccctaaccca
2041 ggggtccctg actgcaaggg ttgcaggcct tgttcatgag aggagagacg agttccagct
2101 ccaggggaac gacctccaaa catacaactt tgacaccaac agggtctctg cgtttaggaa
2161 gctggccgca gacaacaagt acgggatcat ggagactatg agagtgggca cagcgcttaa
2221 gagtgtcaag accttagaag acctgaaagt tgcactgagg gatgtgaagt tcaatgagtg
2281 tgagataatt tacagaaact ccaaataccg agtcgcttcc aatggtaaag gttctgtctc
2341 tgttgacaaa gttgaggacc aaacatccca gactgcaaac gaagtgggcg cagcactcct
2401 cagactcagg caggcaagag ccagatacta tgtcagctgc ttccaagatc tcgtttacac
2461 tctaatacag gtcgccggag catcattcgt tgtcaacagg atctccaaaa ggttctgctg
2521 ggagagatgg gtcaaaccaa ccgagaccca ggaaacgagt gaatccgaaa aggaggtggc
2581 ccaaggcaaa tgggagattg agccaaagga cacagaacca gaaggtaaga agggtaagaa
2641 taagaaaggg agaggcaaga aacacacagc tttctccagt aagggcctga gtgatgagga
2701 gtatgacgag ttcaagagaa ttagagaaga aaggaacgga aaatactcca ttgaggaata
2761 cctgcaagac cgggaccgct actatgagga agtggcagtt gcccgggcga cagaggagga
2821 cttctgtgaa gaggaggagg ccaagataag acaaagaatc tttcgcccca caaagaaaca
2881 gaggaaggaa gaaagggggg tgcttggttt ggtcactggc tcagacatca ggaagagaag
2941 gccagacgat tttcaaccga agggcaacct gtgggcagac gacaccagga gtgtggacta
3001 caacgagaga cttgattttg aggctccccc gagtgtctgg tcaagaatag tcccactggg
3061 cactggctgg ggcttctggg tctcatcaaa ccttctgatc acaacgacgc acgtcctacc
3121 taaggggatt aatgaactct ttggagttga gatcaaacag attcaaattc ataagtccgg
3181 agagttctgc aggttcagat tcccgagacc aattagacca gatgtcacag ggctcgtgtt
3241 ggaggaaggt gctccagaag gcactgtctg ctccatactc gtaaagagac ctacaggtga
3301 gatgatcccc ctggcagtga ggatgggcac acatgcatcc atgaagatac agggtaggac
3361 cgttggtggc cagatgggaa tgctcctcac aggggcaaat gcaaagaaca tggacctagg
3421 cactggtcct ggtgactgcg gttgccctta catctacaaa cgtggcaatg atatagttgt
3481 cgcgggtgtc cacaccgcag cagcccgggg aggcaacact gtcatctgtg ccactcaagg
3541 gctagatggg gaagcagtcc ttgagggaaa tgaaaaccat ggcacttact gcggtgcccc
3601 aatcttaggt ccaggcaagg cgcccaaact tagtacgaaa accaagttct ggcgctcatc
3661 accagatgct ttgccgccag gcacttatga gcctgcctac ttgggaggca aggaccccag
3721 agtggagaaa ggaccatccc tgcagcaagt catgagggac cagctaaaac ctttcacaga
3781 acccaggggc aagccaccca gacctgcagt tttagaagaa gccaaaaaga cagtaatgaa
3841 tgttttagag caaaccattg accctgctaa gccgtggacc tattcccaag catgtgcctc
3901 actggacaag accacctcca gtggtagccc ccatcatgtc aggaaaaatg accattggaa
3961 tggggaatcc ttcactggcc cccttgcaga ccaagcatcc aaagccaacc tcatgtatga
4021 gcaggccaaa catgtgcagc ccgtgtacac ggccgcactt aaagatgagc tagttaaaac
4081 tgacaagatc tacaagaaga taaagaaaag gctcttatgg gggtcggatc ttggtacaat
4141 gatcaggtgt gccagggcct ttggcggtct catggatagc atgaaggcaa gctgcataac
4201 cctcccatgc agggtaggaa tgaacatgaa tgaggatgga cccatcatat ttgacaaaca
4261 ttctaagtat aggtatcact atgatgctga ctattccagg tgggactcaa cccaacaaag
4321 gagcattctc tcggccgcta tggaagtgat ggtgcggttc tctgctgaac cagagctggc
4381 acaagtggtt gcagaggacc tcctggcacc cagccaatta gatgttggcg atttcgtcat
4441 ctcagtccag gagggtctac catcaggggt cccatgcaca tcacaatgga attcaatagc
4501 acattggatc ctaactttga gtgcaatggc agaagtatcg ggtctttcac cagacgttgt
4561 tcaagcccac tcctgtttct cattctacgg tgatgatgag atcgtcagca ctgacatcaa
4621 ccttgatccc atgaagttga cgcaaaaact cagagagtat ggcctggtcc ccactcgacc
4681 tgacaaaact gagggtcccc tcgtaataac tgaagacctc accggcctaa cgttcctgcg
4741 caggtcgatt gcacgggacc cagctgggtg gtttggaaag ttgcaccaag actcaatcct
4801 cagacagttg tactggacaa ggggccccaa ccatgagaac ccatatgaga gcatggtccc
4861 tcactcccag cgggccacgc aactcatggc ccttctcggt gaggcttcac tgcatggtcc
4921 ccagttttac aagaaggtta gcaagatggt cattaatgag atcaaaagtg gtggtctgga
4981 attctatgtg cccagacaag aggccatgtt cagatggatg agattttctg acctcagcac
5041 atgggagggc gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg
5101 ctgctccatc gaatgatggt gctgccaacc tcgtaccaga ggccaccaat gaggttatgg
5161 cacttgagcc ggtggtggga gcctcaattg ctgctcctgt cgtcggccaa caaaatataa
5221 ttgacccctg gattagagaa aattttgttc aggcaccaca gggtgagttt actgtttcac
5281 caaggaactc acctggtgag atgcttttaa atcttgaatt aggccctgag ctcaaccctt
5341 atctgagtca cttgtcccgc atgtataacg gctatgctgg tggtatgcag gttcaggtgg
5401 tcctagctgg gaatgcgttc acagctggta aaatcatctt tgccgccgtc ccaccacatt
5461 tccctgttga taacattagt gcagcccaaa tcacaatgtg cccccatgtg attgttgatg
5521 taagacagct tgagccagtt cttttgcccc tccctgacat aaggaataga ttctttcatt
5581 acaatcagga aaataccccc cggatgagac ttgtggctat gttgtacaca ccccttagag
5641 caaattctgg tgaggatgta ttcacggtgt cttgtagagt tctgacccgc cctgctcccg
5701 actttgagtt cacgtttctg gtgccaccaa ctgtggagtc aaagactaag ccctttacac
5761 ttcccattct gactcttggg gagctgtcca actccagatt ccccgctccg atagacatgc
5821 tgtacactga ccctaatgag gcaattgtgg tgcaaccaca aaatggtaga tgcactctag
5881 atggaacact tcaggggacc acccaactgg tacccaccca aatttgctcc ttcaggggca
5941 cgctaattag ccagacgtcg aggtctgcag attcaacaga ttcagcccca cgggtgagga
6001 accatcctct ccacgttcaa ctgaagaacc tcgatgggac accatatgat ccaacagatg
6061 aggtgccggc agttttgggt gccatagatt tcaaaggaac tgtatttggg gtcgctagtc
6121 aaagaaacac cacagggggc tctataggag caacccgcgc ccatgaagtg cacatagaca
6181 ccacaaaccc cagatatacc ccaaagttag gctctgtgtt gatgtattct gagtctgctg
6241 attttgatga tggacaacct acccgcttca cccccattgg aatgggagcc gatgattggc
6301 accaatggga attgcccgaa tattctggtc atcttactct caacatgaac ttggctcccg
6361 cagttgcccc tgctttccct ggtgagcgca ttctcttctt cagatcagtg gtaccatccg
6421 ctggtggcta tggatcaggt cacatagatt gcctgattcc acaggaatgg gttcagcatt
6481 tctaccagga ggccgctcca tcacagtctg cggtggctct tatcagatat gtcaaccctg
6541 acactggaag aaacatcttt gaggcaaagc tgcatagaga agggttcatc actgtggcaa
6601 attctggaaa caaccccata gttgtgcccc caaatggtta cttcaggttc gaggcctggg
6661 ttaatcaatt ctacacactc acccccatgg gaactggaca ggggcgcaga agagttcaat
6721 aatggcagga gctttcttag ctggattggc aggtgacgcc ataacaagtg gtgtcgggtc
6781 cctaatcagt gctggggcca atgcaattaa ccaaaaggta gagtatgatt ttaataaaca
6841 gctccaattg gcatccttca aacatgacaa agagatgttg cagtcacaag tgttggccac
6901 taaacagctc cagcaagaga tgatgaacat aaggcaaggg gtcttgtccg ctggcggctt
6961 ttcccctaca gatgccgcaa gaggtgctgt aaatgcaccg atgacaaaaa ttttggattg
7021 gaatgggact aggtactttg ctccaaacag tatgaagaca accagttact cgggccagtt
7081 ttccagcaac cctgtgcata ggcagcccac tctaacccgt tctgaatccc caaaaatcaa
7141 ggttaatagt gattctgcta gtgtgtatag ttctgcaact actactcctt cacaatcaac
7201 ccattcaacg gctttgactg cggggtctag ctcatctagg acaacatcct cttctgcagc
7261 agcttccacc ctatctagga ccagcgactg ggtgagagga caaaatgaga ggcttagccc
7321 gtttatggat ggtgctcttc aaacaacttt tgtcacacca ccatcgagca aggcttcatc
7381 atatgggtcg gtctcaaccg ttcccaaagc tgttttggac tcctggactc ctatgtttaa
7441 tacccatagg cagcctctct tcgctcatgt tcgtaggcga ggggagtcac agatttagtg
7501 aaaagattga ttaggttttc tttctttctt cttctccttt tctttctttt aaaaaaaaaa
7561 aaaaaaaaaa aaaaaaaaaa aaaaaaa
//