Typing tool
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Typing tool
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Complete norovirus genomes
| OP609646 | GII.10 | |
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| GII.P16 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7504
LOCUS OP609646 7543 bp RNA linear VRL 16-OCT-2022
DEFINITION Norovirus GII isolate Hu/US/2011/GII.10[P16]/Bangladesh5145
nonstructural polyprotein (ORF1), VP1 (ORF2), and VP2 (ORF3) genes,
complete cds.
ACCESSION OP609646
VERSION OP609646.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7543)
AUTHORS Montmayeur,A.M., Rahman,M., Hossain,E., Xu,R., Vinje,J. and
Chhabra,P.
TITLE Direct Submission
JOURNAL Submitted (07-OCT-2022) Viral Gastroenteritis Branch, Centers for
Disease Control and Prevention, 1600 Clifton Road NE, Atlanta, GA
30329, USA
COMMENT ##Assembly-Data-START##
Assembly Method :: Geneious v. v. 11.1.2; SPAdes v. v. 3.6
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7543
/organism="Norovirus GII"
/mol_type="genomic RNA"
/strain="Bangladesh5145"
/isolate="Hu/US/2011/GII.10[P16]/Bangladesh5145"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Bangladesh"
/collection_date="22-Sep-2011"
/note="genotype: GII.10[P16]"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UYA57434.1"
/translation="MKMASNDASAAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
KQPTPRDNLQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRFEVGSGISGLPELTTVPQ
PDATNTAFSVPPLSLRESREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAA
ISMAKVEMTPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLN
DSWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDII
GKIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGP
EDIAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWF
FPKKEEASELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARRL
STKSASPDIVGTINALLARIAAARSLVHRAKEELSSRLRPVVVMISGKPGIGKTHLAR
EVAKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELAD
TCPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEV
EKAKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIA
RASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVK
TMEELKQAIRNVSIKRCQIIYNGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHH
LRSARIRYYVKCVQEAVYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEAKEE
APKLEDDEFVISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLV
TGSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSP
SLFITSTHVIPAGITEAFGVPIKQVQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEG
TVATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGD
CGCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILG
PGGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEP
RGKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFW
NGETFVGKLADQASKANLMYEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDL
STMVRCARAFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCT
SQWNSITHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLR
EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGP
NHEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..1000
/gene="ORF1"
/product="p48"
mat_peptide 1001..2098
/gene="ORF1"
/product="NTPase"
mat_peptide 2099..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6731
/gene="ORF2"
CDS 5085..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UYA57435.1"
/translation="MKMASNDAAPSSDGAAGLVPESNNEVMALEPVAGASLAAPVTGQ
TNIIDPWIRMNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
MEVQIMLAGNAFTAGKLIFAAVPPHFPVENLSPPQITMFPHVIIDVRTLEPVLLPMPD
IRNSFFHFIQRDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFDFTYLVPP
TVESKSKPFTLPILTLGELTNSRFPLPIDILYTNPNESAVVQCQNGRCTLDGELQGTT
QLLPTGICAFRGKVTQQVQDDHRGTHWNMTVTNLNGTPFDPTEDIPAPLGTPDFSGQI
YGVISQRNTNTVPAEGNLPANRAHEAVIATYSPKFTPKLGNIQFSTWEPQDVSTGQPT
KFTPVGLASVDANSHFDQWTLPSYSGALTLNMNLAPSVAPVFPGECLLFFRSFIPLKG
GYGNPAIDCLLPQEWVQHLYQESAPSLSDVALVRYVNPETGRTLFEAKLHRNGFLTVA
RNSAGPVVAPTNGYFRFDSWVNQFYTLAPMGNGSGRRRMQ"
gene 6731..7504
/gene="ORF3"
CDS 6731..7504
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UYA57436.1"
/translation="MAGAFVAGLTGDVLSNGIGSLINAGANAINQKAEFDFNRQLQQN
SFNHDKEMLQAQVQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
TRYWAPGAMRTSSYSGRFVSTTPSRQVEFPQRKNAASSTGSSYGGSSRSTVSTTLGSS
ISSSSRASPLTQSSLVSNSSSARSRTSDWVREQNRSLEPFMHGALQTTYVTPPSSKAS
SNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRPKGESRV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgtt gcttgcaaca acaacaacga
61 caaggaaaaa tcttcgggtg aaggcttgtt tacaaatatg tcttctaccc taaagaaagc
121 cctcggggct cggcccaagc agcccacccc gagggacaac ttacaaaagc ccccaagacc
181 accaacgccc gagttggtta agaggatacc ccctccccca cccaatggcg aggaagaaga
241 agaaccagtc attaggtttg aggttggcag tggaatctct ggcctgcccg aactcacgac
301 tgttccccaa ccggatgcga ccaacacggc attcagtgtt ccaccgctga gtttaagaga
361 aagcagggag gccaaggaac cgctgactgg ggcaatacta gagatgtggg atggggagat
421 ataccactat ggtttgtatg tggagaaagg cttggtgttg ggcgtacata aaccacctgc
481 ggctataagc atggcaaaag tggaaatgac gccgctgtcg ctgtactggc gtgtggtata
541 cactccccaa tacctcatat cccctgacac tctcaagagg ctcaacggag aggcattccc
601 ctacaccgcc tttgataaca actgttatgc cttttgctgc tgggtgttgg atcttaatga
661 ctcgtggctc agcaggagga tggtgcagag aacaacaggc ttcttcagac cataccaaga
721 gtggaacaga aagcccctac ccactatgga tgactccaaa atcaagaagg tggcaaacat
781 attcttgtgc tcattgtcca cactgttcac caggcctata aaagatatta taggaaagat
841 taaaccactg aacatcttga acatcctggc aacgtgtgac tggacgttcg ccggaattgt
901 ggagtctcta atattgcttg ctgaactctt tggagttttc tggacacccc cagatgtgtc
961 tgctatgatt gctcccttac ttggcgaata cgagttacaa gggccagaag acatcgccgt
1021 cgaactcgta cccgtggtaa tgggagggat tggtctggtg ttagggttca ccaaagagaa
1081 aattggcaaa atgctgtcct cagcagcgtc aacgctcagg gcttgcaaag atctcggtgc
1141 ctatggttta gagatactca aactggtcat gaaatggttc ttcccaaaga aagaggaagc
1201 cagtgaacta gctatggtga gagcaataga ggatgctgtg ctggaccttg aggcgataga
1261 aaacaatcac atgacagctc tactgaaaga caaagatagc cttgcaacct acatgaaaac
1321 actggatcta gaggaagaaa aggctagaag attgtccaca aaatctgcat ctcctgacat
1381 agttgggaca atcaacgccc tattggctcg aatagcggcg gctagatcgc tagttcacag
1441 ggccaaggag gagctatcta gcagacttag gccagttgtt gtcatgatat caggtaagcc
1501 agggataggt aagactcacc tagctaggga ggtggcgaaa aaggtagcat ccactctcac
1561 gggagatcag agagtcgggc tcataccaag aaacggtgtg gaccactggg atgcatataa
1621 aggtgagagg gttgtgttgt gggacgacta cggcatgagc aaccccattc atgatgctct
1681 acgcatacaa gaactggccg acacatgtcc cctcaccttg aattgtgata gaattgaaaa
1741 caaaggaaaa gtttttgata gtgaggttat aataatcaca acaaacctcg ccaacccagc
1801 tcctcttgat tatgtcaact ttgaggcctg ctctaggagg attgatttct tggtgtacgc
1861 cgaagcgcca gaagtggaaa aggcaaaacg agacttccct ggtcaaccag atatgtggaa
1921 ggacgctttc aaggcggact tctcacatat caagttgcaa cttgcgcctc agggtggttt
1981 tgacaagaat ggcaacaccc cacatggaaa gggagttatg aagaccctca ccaccggttc
2041 tctgattgca cgcgcatcag gtttactgca tgagaggatg gatgaatttg aacttcaggg
2101 ccccacaatc accactttca actttgaccg gaacaggatc accgccttta gacaattggc
2161 tgcagaaaac aaatatgggt tagtggacac catgagagtt ggtaatcaac tgaaaggggt
2221 gaaaactatg gaagaactca agcaagcaat taggaacgtg tccatcaaga ggtgccaaat
2281 tatctataat ggctccacgt atgaccttga gtctgatggc aagggtaaag ttttggtgga
2341 aaaggtcaaa aacacttcag ttcaaaccaa caacgaactg gctggagctc tgcaccacct
2401 cagaagtgcc cgaatcaggt attacgtcaa atgtgtgcaa gaagcagtct attccatcct
2461 acaaattgcc ggtgctgcgt tcgtcaccac tcgtatcgca cgccgcatga atatacaaga
2521 gctttggtca aagccaccat tagaccaaag tgagccagag gctaaagaag aggcccctaa
2581 gctagaagat gatgaatttg tcatatcctc caaagacatc aaagaggaag gaaagaaggg
2641 caaaaacaaa actggccgtg gcaagaaaca caccgcattc tctagcaagg gcttgagcga
2701 tgaggagtat gacgagtaca agaggataag agaggaaaga aatgggaagt actctataga
2761 ggagtatctt caagacagag acaggtacta tgaggaactc gccattgcca aagccacgga
2821 agaagacttt tgtgaggagg aagaaatcaa aatccgccaa aggatctttc gccccaccag
2881 aaaacagagg aaggaagaaa gggccacgct ggggctagta actggttcag aaatcagaaa
2941 aagaaaccct gatgacttca agccaaaagg gaaattgtgg gccgatgaca atagaagtgt
3001 tgactacaat gaaaaactgg actttgaggc cccaccaagc atatggtcta gaattgtgag
3061 ttttggttca ggttggggct tctgggtgtc accaagcctg tttataacat caactcatgt
3121 aatccctgca ggcataacag aggcatttgg ggtccctatc aaacaagtcc aagtccacaa
3181 atcaggtgag ttttgtcggt tcagattccc aaaaccaatt agaccagatg tgacagggat
3241 gatcctggaa gaaggtgcac cagagggcac cgtagcaaca gtgctcatca aacgccccac
3301 cggagaactc atgcccctcg cagctaggat gggaacacac gcaaccatga aaattcaggg
3361 ccgcatggtt ggcgggcaga tgggcatgtt gctcactggt tcaaatgcta agggtatgga
3421 cctgggaaca actcctggtg actgtggttg cccgtacatc tacaaaaggg gcaatgacta
3481 tatagtcatt ggagtgcaca cagcagcagc ccgtggtgga aacactgtca tctgcgccac
3541 acagggaagt gagggtgaag caactctcga gggtggagac gacaaaggaa catactgcgg
3601 ggcacccatc ttgggccctg gaggagcacc aaaattgagc accaaaacca aattttggag
3661 gtcgtcaaac acgccccttc caccagggac atatgagccc gcctaccttg gtggccgtga
3721 cccacgtgta aagggtgggc cctcactgca gcaagtcatg agagatcagt tgaaaccctt
3781 cactgaaccc aggggcaagc ccccaagacc tagtgtgctg gaggcagcta aacaaaccat
3841 catcaacgtc ctcgagcaaa ctttagaccc cccacaaaaa tggacgtacg cacaagcgtg
3901 cgcttcactc gacaagacca cctctagtgg gcaccctcat cacgcccgaa agaatgaatt
3961 ctggaacggt gagacatttg ttggcaagtt ggcagaccaa gcatcaaaag caaacctaat
4021 gtatgaggaa gggaaacata tgacaccagt gtacacagca gccctcaagg acgaactggt
4081 caagactgac aaagtttacg gaaagatcaa gaagagacta ctctggggct ctgacttgtc
4141 caccatggtc cggtgcgcta gggcctttgg tggactcatg gatgagatga aggctcactg
4201 catatcactc ccagtccgag ttggcatgaa tatgaatgag gatggcccaa taatatttga
4261 gaagcactcc agatataagt accattatga tgcagattac tcccgctggg attcaacaca
4321 acaaagggct gttttggcag cggccttaga aataatggta agattctctg cagaaccaca
4381 actggcgcag acggtcgctg aagatctgct ggctcccagc gtggtggatg taggagactt
4441 caaaatttca ataaatgagg ggctcccttc tggtgtgcca tgcacttccc agtggaactc
4501 catcacacac tggctgctga ctctctgtgc tttgtctgaa gtcaccaatc tgtcccctga
4561 catcgtgcag gcaaattcca tgttctcgtt ctacggtgat gacgagattg tcagcaccga
4621 tataaaatta gaccctgaaa agctaaccac caaattgagg gaatatggtc tgaaaccaac
4681 tcgcccagac aaaaccgagg gacccctgat catcagtgag gatttggatg gactcacctt
4741 cctccggaga acagtttctc gtgatccagc tggttggttt ggaaagttag atcagagctc
4801 aatactaagg cagatgtatt ggaccagagg gccaaaccat gaagacccta atgagaccat
4861 gataccccac tctcaaaggc ccatacagct catggcactg cttggtgagg cttcccttca
4921 cggaccctcc ttttacagca agattagcaa attggtcata actgaactca aagaaggtgg
4981 aatggatttt tacgtgccaa ggcaggaacc catgttcagg tggatgaggt tctctgactt
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccgc tccatctagt gatggtgcag ccggcctcgt gccagaaagt aataatgagg
5161 ttatggctct tgaacctgta gctggggcgt ctttagctgc ccctgtgaca ggccaaacaa
5221 atataattga cccatggata agaatgaact ttgttcaagc cccaaatgga gagttcactg
5281 tttccccaag aaattccccc ggagaagtac tcctaaattt ggaactgggt cctgaattaa
5341 acccttatct ggcacattta tctaggatgt ataatggcta tgctggaggc atggaggttc
5401 agatcatgct agctgggaac gcgttcactg ctggcaaatt gatctttgct gctgtgcccc
5461 cacattttcc cgttgaaaat ctgagccctc cccaaattac aatgttccca catgtgatta
5521 tagatgttag aactttagaa cctgtgttac ttcctatgcc cgacatcagg aattctttct
5581 ttcacttcat ccagagggat gagccaaaaa tgagattggt ggcaatgtta tacacaccac
5641 tgaggtccaa tggttctggg gacgatgtat tcacagtctc atgcagggtt ctgacccgtc
5701 ccactcctga ttttgatttt acttacttgg taccaccaac tgtcgaatca aagagtaaac
5761 cttttacttt gcctatatta acattgggag aattgacaaa ttctaggttt cccttgccca
5821 ttgatatttt gtacactaac ccaaatgaaa gtgcagttgt tcagtgccaa aatggtaggt
5881 gcaccctgga cggtgaactg cagggaacaa ctcagctcct gcccacaggc atctgtgcat
5941 ttaggggcaa ggtcactcaa caggtgcagg atgatcacag gggcacacac tggaacatga
6001 cagtgaccaa cttaaatggg actccgtttg acccaactga ggacatccct gccccactag
6061 gcactccgga tttctccggt caaatttatg gggtaataag tcagagaaac accaacacag
6121 ttcccgcaga aggaaatctc ccggccaaca gggctcatga agctgtgatt gcaacctaca
6181 gtcccaaatt cacacccaaa ttgggtaaca tccaatttag tacttgggaa ccccaagatg
6241 tgagcactgg acagcccacc aagttcaccc cagttggctt ggcctctgtg gatgccaact
6301 cccattttga tcaatggact ctccccagct attctggtgc tttaacttta aacatgaatt
6361 tggccccatc tgtcgcccca gtcttccctg gagagtgtct tctgttcttt aggtctttca
6421 tcccactgaa ggggggctat gggaaccccg ctattgactg cttgttgcca caagagtggg
6481 tccagcatct ctatcaggag tcagcaccat ctcttagcga tgtggctttg gtgaggtatg
6541 tgaacccaga aactgggcgc accctctttg aagccaagtt gcacaggaat ggattcctga
6601 ctgttgctag gaacagcgct ggacctgtcg tggcccccac aaatggatat ttcagatttg
6661 attcctgggt caaccagttt tacactttag cccccatggg aaatggcagt gggcgtagaa
6721 gaatgcagta atggctggag cttttgtagc aggtctgacc ggtgacgttc ttagcaacgg
6781 aatcgggtca ctcattaatg ctggtgccaa tgcgattaac caaaaagctg agtttgattt
6841 caataggcag ctgcaacaaa attcttttaa tcatgataaa gagatgctcc aggcccaagt
6901 tcaagcaaca aagcagctgc aggcagacat gatcgccatt aagcaggggg tgttggccgc
6961 tggcggcttc tcccccactg atgcagcaag aggggcagtc aacgctccca tgacacaggc
7021 tttggactgg agtggcacga gatactgggc tccaggtgcc atgagaacat ccagttattc
7081 aggcaggttt gtgtcgacca ctccatctag gcaagttgag tttcctcagc gtaagaatgc
7141 tgcatcctcc actggttctt cttatggtgg gtcttctagg tctacagttt ctaccactct
7201 tggttcttct atatcttcta gttctagagc ttcaccccta actcaatcta gtttggtttc
7261 taattcttct tcagcaagat caagaactag tgactgggtg cgtgagcaaa accggagcct
7321 agaacccttt atgcatgggg ctttgcagac tacttatgtc actcctccat caagtaaagc
7381 ttctagcaat gggacggtct cgaccgttcc aaaaggtgtt ttggactctt ggacacctgc
7441 gttcaacacc cgcaggcagc cgcttttcgc ataccttcga ccgaagggag agtcacgagt
7501 ttagtgaaaa gattaatttt cctttaaatt tttcttttaa aaa
//