Typing tool
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Typing tool
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Complete norovirus genomes
| ON706295 | GII.6 | |
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| GII.P7 |
ORF1: 1..309
ORF2: 290..1942
ORF3: 1942..2721
LOCUS ON706295 2721 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-044 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3)
genes, complete cds.
ACCESSION ON706295
VERSION ON706295.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 2721)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2721)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..2721
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-044"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="06-Jun-2016"
/note="genotype: GII.6[P7]"
gene <1..309
/gene="ORF1"
CDS <1..309
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92950.1"
/translation="DSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGP
QFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE
"
mat_peptide <1..306
/gene="ORF1"
/product="RdRp"
gene 290..1942
/gene="ORF2"
CDS 290..1942
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92951.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 1942..2721
/gene="ORF3"
CDS 1942..2721
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92952.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPSKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGLSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 gactcaattc tcaggcaatt atactggaca agggggccca atcatgagaa cccatacgag
61 agcatggttc cccattctca gcgagctacc cagctcatgg cccttcttgg tgaggcttca
121 ttgcatggtc cccagtttta caagaaagtt agcaagatgg tcatcaatga gattaagagt
181 ggtggtctgg aattttatgt gcccagacaa gaggccatgt ttaggtggat gagattctct
241 gacctcagca catgggaggg cgatcgcaat cttgctcccg agggtgtgaa tgaagatggc
301 gtcgaatgac gccgctccat caaatgatgg tgctgccaac ctcgtaccag aggccaacaa
361 tgaggttatg gcacttgaac cggtggtggg agcctcaatc gcagctcctg ttgtcggtca
421 gcaaaatata attgacccct ggattagaga aaattttgtc caagcaccac agggcgagtt
481 tactgtttca ccaaggaatt cgcccggtga aatgcttcta aatcttgaat tgggccctga
541 acttaaccct tacttgagtc atttgtcccg catgtacaat gggtatgctg gtggcatgca
601 ggttcaggtg gtcctagctg ggaatgcgtt cacagctggg aagatcatct ttgccgccgt
661 gccaccacac ttccctgtgg ataatattag tgcagcccag ataactatgt gtccccatgt
721 gattgttgat gtgagacagc ttgaaccagt gcttctgccc ctccccgata taaggaatag
781 gttcttccat tacaaccagg aaaacacccc tcggatgaga cttgtggcca tgctctacac
841 gcctctaagg gctaattctg gtgaggacgt gttcactgtg tcctgtaggg ttctgactcg
901 ccccgctcca gattttgagt ttacattttt agttccacca actgttgaat caaaaacaaa
961 accctttact ctacccatcc taactcttgg tgagttgtct aactcccgtt ttccggctgc
1021 tatagatatg ctttataccg atcccaatga atcaatagtt gttcagcccc aaaatggtag
1081 gtgcactctt gatggcacat tgcaaggcac aacacaattg gtcccaacac agatttgtgc
1141 ctttagaggc accctgatca gccagactgc gagagcggtc gattcaacag attcccccca
1201 gagagcccgt gatcacccgt tacacgtcca ggtcaagaac ctagatggca cacagtatga
1261 cccaacagat gatattcctg cagtcctggg ggctattgac ttcaaaggta cagtgttcgg
1321 agtggctagt cagagggatg tctctggaac acaagaacag ggccattatg ccacccgagc
1381 ccatgaagca cacattgaca caactgaccc aaagtatgca cccaaattag gcacaattct
1441 tatcaaatct gaatctcctg atttcaatac aaatcaaccc attaggttca ctccagtggg
1501 catgggtgac aacaattgga gacagtggga attgcctgac tattctggta gattgacttt
1561 aaatatgaac cttgcccccg ctgtttcccc atctttccct ggtgaacgaa tccttttctt
1621 taggtctata gtaccatcag ctggaggcta cgggtctggc tatatagact gtctcatacc
1681 ccaggagtgg gtgcaacact tctaccagga ggcagcacct tcacaatctg ctgttgcact
1741 ggtcaggtat gttaaccccg acactgggcg taacatcttt gaggccaagt tgcacagaga
1801 agggttcctc accgtggcca attctggaaa caatcctatt gtagttcccc ctaatggtta
1861 ttttagattt gaggcttggg ttaaccaatt ttatacactt gcccccatgg gatctggaca
1921 ggggcgtaga agggctcagt aatggctgga gccttcttcg cagggttagc aggtgatgtc
1981 gtgtcgaacg gcatcggttc ccttatcaat gcaggtgcta atgcagttaa tcaaaaggtt
2041 gagtatgatt ttaataagca acttcagatg gcatcattca aacatgacaa ggagatgtta
2101 caatcacagg tgttggcaac caaacaactg cagcaggaaa tgatgaacat aaagcaaggg
2161 atgttgaccg ctggcggctt ctcccctgcg gatgctgcta gaggggctgt taacgctcca
2221 atgacaaaaa tactggactg gaatggcaca agatattggg cacctaacag catgaaaact
2281 acaagctatt caggacagtt ctctagtagc cccgtccaca ggtctcctgc tcccccccag
2341 catactgctc catcaaaaag taagttgcaa agtgattctg ctagtgtgta tagctcccct
2401 tctactgttt cttcacaatc aactcattca acagtgctgt ctgcaggaac tgggttgtcc
2461 agatccaccc ccacgtccac agcaacctcc accctgtcta gaaccagcga ctgggttaga
2521 ggacagaatg aaaggcttag cccgtttatg gatggtgctc tccaaactac ttttgtcaca
2581 ccaccatcga gcaaggcttc atcaaatggg acggtctcga ccgtgcccaa ggctgttttg
2641 gactcctgga ctcctatgtt caacacacat aggcagcctc tcttcgccca tttgcgcagg
2701 cgaggggagt cacaaatcta g
//