Typing tool
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Typing tool
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Complete norovirus genomes
| ON706294 | GII.6 | |
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| GII.P7 |
ORF1: 1..1347
ORF2: 1328..2980
ORF3: 2980..3194
LOCUS ON706294 3194 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-043 nonstructural polyprotein, RdRp
region, (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds;
and VP2 (ORF3) gene, partial cds.
ACCESSION ON706294
VERSION ON706294.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 3194)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3194)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..3194
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-043"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="29-Dec-2009"
/note="genotype: GII.6[P7]"
gene <1..1347
/gene="ORF1"
CDS <1..1347
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92947.1"
/translation="MRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQTIDPAKPWTY
SQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAA
LKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMN
EDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..1344
/gene="ORF1"
/product="RdRp"
gene 1328..2980
/gene="ORF2"
CDS 1328..2980
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92948.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 2980..>3194
/gene="ORF3"
CDS 2980..>3194
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92949.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIK"
ORIGIN
1 atgagagacc agctgaaacc cttcacagag cccaggggca aaccacctag accagcagtt
61 ttagaagaag ctaaaaagac agtgatgaat gttctagaac agaccattga ccctgctaag
121 ccatggacct actcacaagc atgtgcttca ctggacaaga ccacttctag tggcagcccc
181 caccatgtca agaaaaatga ccactggaat ggggagtctt ttactggtcc ccttgcggac
241 caagcatcca aagccaacct catgtatgaa caggcaaagc atgtgcagcc cgtgtacacg
301 gccgcgctca aagatgagct tgttaagact gataagatct acaagaagat aaagaagagg
361 cttctatggg ggtcagacct tggtacgatg atcaggtgtg ccagggcttt tggcggcctt
421 atggacagta tgaaagcaag ttgcatagct cttccatgca gggtggggat gaacatgaat
481 gaggatggcc ctatcatatt tgacaaacac tccaagtaca ggtatcacta tgatgctgac
541 tattctaggt gggactcaac ccagcaaagg agtattcttt ccgccgctat ggaggtgatg
601 gtgaggttct ctgctgaacc agaattggca caagtggtcg cagaggacct tttggcgcct
661 agccagctag atgttggcga ttttgtcatc tcagtccagg agggtctgcc atcaggagtc
721 ccatgtacat cacagtggaa ttcgatagcg cactggattc tgactctgag cgcaatggca
781 gaagtttcag gtctttcacc agacgttgtc caagcccatt cctgtttttc attttatggc
841 gacgatgaga tcgttagcac tgacatcaac cttgacccca tgaaattgac acagaaactc
901 agggagtatg gtctggtccc cacccggcct gacaagactg aaggtcccct cgtcataact
961 gaagacctca ccggcctgac attcctgcgt agatcgattg cacgggatcc agctggatgg
1021 tttggaaaat tggatcaaga ctcaattctc aggcaattat actggacaag ggggcccaat
1081 catgagaacc catacgagag catggttccc cattctcagc gagctaccca gctcatggcc
1141 cttcttggtg aggcttcatt gcatggtccc cagttttaca agaaagttag caagatggtc
1201 atcaatgaga ttaagagtgg tggtctggaa ttttatgtgc ccagacaaga ggccatgttt
1261 aggtggatga gattctctga cctcagcaca tgggagggcg atcgcaatct tgctcccgag
1321 ggtgtgaatg aagatggcgt cgaatgacgc cgctccatca aatgatggtg ctgccaacct
1381 cgtaccagag gccaacaatg aggttatggc acttgaaccg gtggtgggag cctcaatcgc
1441 agctcctgtt gtcggtcagc aaaatataat tgacccctgg attagagaaa attttgtcca
1501 agcaccacag ggcgagttta ctgtttcacc aaggaattcg cccggtgaaa tgcttctaaa
1561 tcttgaattg ggccctgaac ttaaccctta cttgagtcat ttgtcccgca tgtacaatgg
1621 gtatgctggt ggcatgcagg ttcaggtggt cctagctggg aatgcgttca cagctgggaa
1681 gatcatcttt gccgccgtgc caccacactt ccctgtggat aatattagtg cagcccagat
1741 aactatgtgt ccccatgtga ttgttgatgt gagacagctt gaaccagtgc ttctgcccct
1801 ccccgatata aggaataggt tcttccatta caaccaggaa aacacccctc ggatgagact
1861 tgtggccatg ctctacacgc ctctaagggc taattctggt gaggacgtgt tcactgtgtc
1921 ctgtagggtt ctgactcgcc ccgctccaga ttttgagttt acatttttag ttccaccaac
1981 tgttgaatca aaaacaaaac cctttactct acccatccta actcttggtg agttgtctaa
2041 ctcccgtttt ccggctgcta tagatatgct ttataccgat cccaatgaat caatagttgt
2101 tcagccccaa aatggtaggt gcactcttga tggcacattg caaggcacaa cacaattggt
2161 cccaacacag atttgtgcct ttagaggcac cctgatcagc cagactgcga gagcggtcga
2221 ttcaacagat tccccccaga gagcccgtga tcacccgtta cacgtccagg tcaagaacct
2281 agatggcaca cagtatgacc caacagatga tattcctgca gtcctggggg ctattgactt
2341 caaaggtaca gtgttcggag tggctagtca gagggatgtc tctggaacac aagaacaggg
2401 ccattatgcc acccgagccc atgaagcaca cattgacaca actgacccaa agtatgcacc
2461 caaattaggc acaattctta tcaaatctga atctcctgat ttcaatacaa atcaacccat
2521 taggttcact ccagtgggca tgggtgacaa caattggaga cagtgggaat tgcctgacta
2581 ttctggtaga ttgactttaa atatgaacct tgcccccgct gtttccccat ctttccctgg
2641 tgaacgaatc cttttcttta ggtctatagt accatcagct ggaggctacg ggtctggcta
2701 tatagactgt ctcatacccc aggagtgggt gcaacacttc taccaggagg cagcaccttc
2761 acaatctgct gttgcactgg tcaggtatgt taaccccgac actgggcgta acatctttga
2821 ggccaagttg cacagagaag ggttcctcac cgtggccaat tctggaaaca atcctattgt
2881 agttccccct aatggttatt ttagatttga ggcttgggtt aaccaatttt atacacttgc
2941 ccccatggga tctggacagg ggcgtagaag ggctcagtaa tggctggagc cttcttcgca
3001 gggttagcag gtgatgtcgt gtcgaacggc atcggttccc ttatcaatgc aggtgctaat
3061 gcagttaatc aaaaggttga gtatgatttt aataagcaac ttcagatggc atcattcaaa
3121 catgacaagg agatgttaca atcacaggtg ttggcaacca aacaactgca gcaggaaatg
3181 atgaacataa agca
//