Typing tool
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Typing tool
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Complete norovirus genomes
| ON706290 | GII.6 | |
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| GII.P7 |
ORF1: 1..3438
ORF2: 3419..5071
ORF3: 5071..5850
LOCUS ON706290 5876 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-039 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION ON706290
VERSION ON706290.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 5876)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 5876)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..5876
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-039"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="10-Jan-2006"
/note="genotype: GII.6[P7]"
gene <1..3438
/gene="ORF1"
CDS <1..3438
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92939.1"
/translation="MGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTN
LVNPAPLDYVNFEACSRRIDFLVYAESPEIEKVKRDFPGQPDMWKDYFKQDFSHIKLT
LAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERKDEFQLQGNDLQTYNFDTN
RVSAFRKLAADNKYGIMETMRVGTALKNVKTLEDLKIALRDVKFNECEIIYRNSKYRV
SSNGKGSVSVDKVEDHTSQTANEVGSALLRLRQARARYYVSCFQDLVYTLIQVAGASF
VVNRISKRFCWERWVKPTETQEASEPEKEVPQGRWEIEPKDTEPEGKKGKNKKGRGKK
HTAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEE
EAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNEK
LDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEIKQIQIHKSGE
FCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGEMIPLAVRMGTHASMKIQGR
TVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICA
TQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLG
GRDPRVEKGPSLQQVMRDQLKSFTEPRGKPPRPTVLEEAKKTVMNVLEQTIDPAKPWT
YSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTA
ALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNM
NEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDL
LAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSC
FSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSI
ARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQ
FYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..444
/gene="ORF1"
/product="NTPase"
mat_peptide 445..963
/gene="ORF1"
/product="p22"
mat_peptide 964..1362
/gene="ORF1"
/product="VPg"
mat_peptide 1363..1905
/gene="ORF1"
/product="Pro"
mat_peptide 1906..3435
/gene="ORF1"
/product="RdRp"
gene 3419..5071
/gene="ORF2"
CDS 3419..5071
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92940.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLASAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANPGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 5071..5850
/gene="ORF3"
CDS 5071..5850
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92941.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTSSYSGQFSSSPVHRSSAPSQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atggggaacc ctgtcaaaga tgctttaaca ctacaagaat tggctgacac atgcccagtc
61 actctaaatt gtgataggat cgagaacaag gggaaaatgt tcgacagtga tgtcatcata
121 attacgacca atctagtcaa ccctgcacct ctcgactatg tgaacttcga ggcgtgctct
181 agaagaattg atttcttggt ctatgcagag tcaccagaaa ttgagaaggt taagagagat
241 ttccctggtc aacctgacat gtggaaggac tatttcaaac aagacttttc ccacataaag
301 ctaaccctag ccccccaagg cggatttgac aagaatggta acaccccgca tggtaagggc
361 accatgcgat ccctcaccca ggggtcccta accgcaaggg ttgcaggcct tgttcacgag
421 aggaaggatg agttccagtt acaagggaac gacctccaga catacaactt tgacaccaac
481 agggtctctg cgttcagaaa actggccgca gacaacaagt atggaatcat ggaaacaatg
541 agagtgggta cagcgctcaa gaatgtcaag actctggaag acctgaaaat cgccttgaga
601 gatgtaaagt tcaatgagtg tgaaataatt tacaggaact ctaagtatcg agtctcttcc
661 aacggcaagg gctctgtttc tgttgacaaa gttgaggatc acacgtctca gactgcaaat
721 gaagtgggct cagcactcct cagacttaga caagcaaggg ccagatatta tgtcagctgc
781 ttccaagacc tcgtctacac tctcatacag gttgctgggg cgtcattcgt tgtcaacagg
841 atctccaaaa ggttttgctg ggaaaggtgg gttaagccaa ccgaaactca agaagcgagt
901 gagcccgaaa aggaagtacc tcaaggtaga tgggaaattg agcccaagga cacagaacca
961 gaaggcaaga agggcaagaa caagaaaggg agaggcaaga aacacacagc cttctccagc
1021 aaaggcctga gtgatgaaga gtatgatgag ttcaagagaa tcagagaaga gaggaacgga
1081 aaatactcca ttgaggaata cctgcaagac cgggaccgct actatgaaga agtggcagtt
1141 gcccgagcaa cagaagagga cttttgtgaa gaggaagaag ccaagataag acaaagaatc
1201 ttccgtccaa caaggaagca aaggaaggag gaaagagggg tgcttggctt agtcactggc
1261 tcagatatca ggaagaggag accagacgat tttcaaccaa aaggcaacct gtgggcagat
1321 gacactagga gtgtggatta caacgagaaa cttgactttg aggctccccc aagcgtctgg
1381 tcaaggatag tcccattggg tactggttgg ggcttctggg tttcatctaa cctcctgatc
1441 acaacaacac acgtcctgcc caagggagtc aaggaactct ttggtgttga aatcaaacaa
1501 atccaaatcc acaagtctgg agaattttgc aggtttaggt tcccaagacc aatcaggcca
1561 gacgttacag ggctcgtgtt ggaggaaggt gctccggaag gcactgtctg ttctatactt
1621 ataaagagac ctacaggtga gatgatcccc ctagcagtga ggatgggcac gcacgcatcc
1681 atgaaaatac agggtaggac cgtcggtggc cagatgggaa tgcttctcac aggggcaaac
1741 gcaaagaaca tggatcttgg caccggtcct ggtgactgcg gttgccctta catctataag
1801 cgtggcaacg acatagttgt cgcgggtgtc catactgcag cagcccgggg gggcaacact
1861 gttatatgtg caactcaagg gcaagatggg gaggcagtcc ttgaaggaaa tgaaaacctt
1921 ggcacttact gtggtgcccc aattttgggc cctggcaaag cacctaaact tagcacaaaa
1981 accaaatttt ggcgctcgtc accagatgcc ctacctcctg gtacgtatga acctgcttac
2041 ctggggggta gggatcccag agtggaaaaa gggccctccc tacagcaagt tatgagagac
2101 cagctgaaat ctttcacaga gcccaggggc aaaccaccta gaccaacagt tttagaagaa
2161 gctaaaaaga cagtgatgaa tgttctagaa cagaccattg accctgctaa gccatggacc
2221 tactcacaag catgtgcttc actggacaag accacttcta gtggcagccc tcaccatgtc
2281 aagaaaaatg accactggaa tggggagtct tttactggtc cccttgcgga tcaagcatcc
2341 aaagccaacc tcatgtatga acaggcaaaa catgtgcagc ccgtgtacac ggccgcgctt
2401 aaagatgagc ttgttaagac tgataagatc tacaagaaga taaagaagag gcttctatgg
2461 ggatcagacc ttggtacgat gatcaggtgt gccagggctt ttggcggcct tatggacagt
2521 atgaaagcaa gttgcatagc tcttccatgc agggtgggga tgaacatgaa tgaggatggc
2581 cccatcatat ttgacaaaca ctccaagtac aggtatcatt atgatgctga ctattctagg
2641 tgggactcaa cccagcaaag gagcattctt tccgccgcta tggaggtgat ggtgaggttc
2701 tctgctgaac cagaattggc acaagtggtc gcagaggacc ttttggcgcc tagccagctg
2761 gacgttggcg attttgtcat ctcagtccag gagggcctgc catcaggagt cccatgtaca
2821 tcacaatgga attcaatagc gcactggatt ctaactctga gcgcaatggc agaagtttca
2881 ggtctttcac cagacgttgt ccaagcccat tcctgttttt cattttacgg cgacgacgag
2941 atcgttagca ctgacatcaa ccttgacccc atgaaattga cacagaaact cagggagtat
3001 ggtctggttc ccacccggcc tgataagact gaaggtcccc tcgtcataac tgaagacctc
3061 accggcctaa cattcctacg taggtcgatt gcacgggatc cagctggatg gtttggaaaa
3121 ttggatcagg actcaattct caggcaatta tactggacaa gggggcccaa tcatgagaac
3181 ccatacgaga gcatggttcc ccattctcag cgagctaccc agctcatggc ccttcttggt
3241 gaggcttcat tgcatggtcc tcagttttac aagaaagtta gcaagatggt catcaatgag
3301 attaagagtg gtggtctgga attttatgtg cccagacaag aggccatgtt taggtggatg
3361 agattctctg acctcagcac atgggagggc gatcgcaatc ttgctcccga gggtgtgaat
3421 gaagatggcg tcgaatgacg ccgctccatc aaatgatggt gctgccaacc tcgtaccaga
3481 ggccaacaat gaggttatgg cacttgaacc ggtggtgggg gcctcaatcg cagctcctgt
3541 tgtcggtcag caaaatataa ttgacccctg gattagagaa aattttgtcc aagcaccaca
3601 gggcgagttt actgtttcac caaggaactc gcccggtgag atgcttctga atcttgaatt
3661 gggcccagaa cttaacccct acttgagtca tttgtcccgc atgtacaatg ggtatgctgg
3721 tggcatgcag gttcaggtgg tcctagctgg gaatgcgttc acagctggga agatcatctt
3781 tgccgccgtg ccaccacact tccctgtgga taatattagt gcagcccaga taactatgtg
3841 tccccatgtg attgttgatg tgagacagct tgaaccagtg cttctgcccc tccccgatat
3901 aagaaacagg ttcttccatt acaaccagga aaacacccct cggatgagac ttgtggccat
3961 gctctacacg cctctaaggg ctaattctgg tgaggacgtg ttcactgtgt cctgtagggt
4021 tctgactcgc cccgctccag attttgagtt cacattttta gttccaccaa ctgttgaatc
4081 aaaaacaaaa ccctttactc tacctatcct aactcttggt gagttgtcca actcccgttt
4141 tccggctgct atagatatgc tttatactga tcccaatgaa tcaatagttg ttcagcctca
4201 aaatggtagg tgcactcttg atggcacatt gcaaggcaca acacaattgg tcccaacaca
4261 gatttgtgcc tttagaggta ccctgatcag ccagactgcg agagcggtcg attcaacaga
4321 ttccccccag agagcccgtg atcatccact acacgtccag gtcaagaacc tagatggcac
4381 acagtatgac ccaacagatg atattcctgc agtcctgggg gctattgact tcaaaggtac
4441 agtgttcgga gtggctagtc agagggatgt ctctggaaca caagaacagg gccattatgc
4501 cacccgagcc catgaagcac acattgatac aactgaccca aagtatgcac ccaaattagg
4561 cacaatcctt attaaatctg aatctcctga tttcaataca aatcaaccca ttaggttcac
4621 tccagtaggc atgggtgaca acaattggag acagtgggaa ttgcctgatt attctggtag
4681 attgacttta aatatgaacc ttgcctccgc tgtttcccca tctttccctg gtgaacgaat
4741 ccttttcttt aggtctatag taccatcagc tggaggctac gggtctggct atatagactg
4801 tctcataccc caggaatggg tacaacattt ctaccaggag gcagcacctt cacaatctgc
4861 tgttgcactg gtcaggtatg ttaaccccga cactgggcga aacatctttg aggccaagtt
4921 acacagagaa gggttcctca ccgtggccaa tcctggaaac aatcctattg tggttccccc
4981 taatggttat tttagatttg aggcttgggt taaccaattt tacacacttg cccccatggg
5041 atctggacag gggcgtagaa gggctcagta atggctggag ccttcttcgc agggttagca
5101 ggtgatgtcg tgtcgaacgg catcggttcc ctcatcaatg caggtgctaa tgcagtcaat
5161 caaaaggttg agtatgattt taataaacaa cttcagatgg catcattcaa acatgataag
5221 gagatgttac aatcacaggt gttggcaacc aaacaactgc agcaggaaat gatgaacata
5281 aagcaaggga tgttgaccgc tggcggcttc tcccctgcgg acgctgctag aggggctgtt
5341 aacgctccaa tgacaaaaat actggactgg aatggcacaa gatattgggc acctaacagc
5401 atgaaaactt caagttattc aggacagttc tctagtagcc ccgtccacag gtcttctgct
5461 ccctcccagc acactgcccc accaaaaagt aagttgcaaa gtgattctgc tagtgtgtat
5521 agctccccct ctactgtttc ttcacaatca actcattcaa cagtgttgtc tgcaggaacc
5581 gggtcgtcca gatccacccc cacgtccaca gcaacctcca ccctgtctag aaccagcgac
5641 tgggttagag gacagaatga aaggcttagc ccgtttatgg atggtgctct ccaaactact
5701 tttgtcacac caccatcgag caaggcttca tcaaatggga cggtctcgac cgtgcccaaa
5761 gctgttttgg actcctggac tcctatgttc aacacacata ggcagcctct cttcgcccat
5821 ttgcgcaggc gaggggagtc acaaatttag tgaaaagagt gattaggctt tctttc
//