Typing tool
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Typing tool
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Complete norovirus genomes
| ON706289 | GII.6 | |
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| GII.P7 |
ORF1: 1..4997
ORF2: 4978..6630
ORF3: 6630..7409
LOCUS ON706289 7427 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-038 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION ON706289
VERSION ON706289.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7427)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7427)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7427
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-038"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="19-Mar-2014"
/note="genotype: GII.6[P7]"
gene <1..4997
/gene="ORF1"
CDS <1..4997
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="URW92936.1"
/translation="AFSNIKVGFKKMLGAVPKGTKAPSSDQHCPTVKIGPKTLTVPPE
PPNGEDTVQFDAKSETVIGIPDLTTVQNEHENTPYTVPPLSEREHRPANEPLPGTILE
MWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELTPISLYWRPVYTPNYLVCPDTLK
GLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVD
DGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFAGIVETVILMAE
LFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLS
SAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHL
TTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARIAAARSLLHKAK
EEMFSRIRPVVVMISGRPGIGKTHMARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYR
GERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTNLVN
PAPLDYVNFEACSRRIDFLVYAESPEIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAP
QGGFDKNGNTPHGKGTMRSLTQGSLTARIAGLVHERKDEFQLQGNDLQTYNFDTNRVS
AFRKLAADNKYGIMETMRVGAALKNVKTLEDLKVALRDVKFNECEIIYRSSKYRVSSN
GKGSVSVDKVEDHTSQTANEVGSALLRLRQARARYYVSCFQDLVYTLIQVAGASFVVN
RISKRFCWERWVKPTETQEASEPEKEVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTA
FSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAK
IRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERLDF
EAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEVKQIQIHKSGEFCR
FRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVG
GQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQG
QDGEAVLEGNEDLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKD
PRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQ
ACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALK
DELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNED
GPIIFDKHSKYRYHYDADYSRWDSTQQRSVLSAAMEVMVRFSAEPELAQVVAEDLLAP
SQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSF
YGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIARD
PAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYK
KVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPESVNEDGVE"
mat_peptide <1..905
/gene="ORF1"
/product="p48"
mat_peptide 906..2003
/gene="ORF1"
/product="NTPase"
mat_peptide 2004..2522
/gene="ORF1"
/product="p22"
mat_peptide 2523..2921
/gene="ORF1"
/product="VPg"
mat_peptide 2922..3464
/gene="ORF1"
/product="Pro"
mat_peptide 3465..4994
/gene="ORF1"
/product="RdRp"
gene 4978..6630
/gene="ORF2"
CDS 4978..6630
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92937.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQEDTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQNARAADLTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESTDF
TTNQPIRFTPVGMGDNNWRQWELPDYSGSLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6630..7409
/gene="ORF3"
CDS 6630..7409
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92938.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTAPPKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLSPFMGGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHFRRRGESQI"
ORIGIN
1 gagcattctc caacatcaaa gttggattta agaaaatgct gggtgccgta cctaagggca
61 ctaaagcacc cagcagtgac cagcactgtc caacagttaa gatcgggccc aaaacactaa
121 cagtcccccc tgaaccccca aatggtgaag acactgtaca gtttgatgca aaatcggaaa
181 ctgtaattgg gataccggat ttgacaacag tgcaaaatga acatgaaaat accccataca
241 ctgtccctcc actgagtgag agggaacaca gaccagccaa tgagccactt cctggcacaa
301 tattggagat gtgggatggt gaattctacc actactccgt gtacgtcagc ggcggcaaag
361 ctctgggggt tcacaaacct ccggcagcta taagtctcgc gacgatagag ctcaccccca
421 tatctctata ctggaggccc gtttacaccc ccaactatct ggtctgccca gacacactga
481 aaggtctcgc tggtgaaaag ttcccctaca cggccttcag caacaattgc tacaacttct
541 gctgctgggt gcttgaactc aatgacacgt ggcttagcag aagaagcatt tctagaacca
601 ccggtttctt caaaccgtac cagtcttgga acaggaaacc tctcccaacc gttgatgatg
661 gaaagatcaa aaaggtggcc aacgcgatcc tttgtgcact cggttcgctg ttctcaaagc
721 caatcaagga cctgctaggc aagctcaaac cattgaactt actacacctg ctagcgtcgt
781 gtgattggac gtttgcaggt atagtggaga cagtcatctt aatggcagaa ctcttcaacg
841 tcttttggac cccgccagac gtctctaatt ttatagcctc cctgataggt gattttgaat
901 tgcaggggcc tgaggacttg gcggtagagc ttgttcctgt ggttatgggt ggtataggaa
961 tggttctcgg cttcacagct gagaagatag gtcgcatgct gtcgtccgct gcatcaacac
1021 tgcgggcgtg taaagactta gggaactatg cccttgacat acttaaattg gtcatgaaat
1081 ggttcttccc aaagaaagag gagaaagccg agatggaaac cttaagggcg attgaggatg
1141 ccgtcctaga tatggaggcc ataggtaaca accacctcac gaccctcctc aaggataaag
1201 acagtctcac ggccttcatg aagaccttgg atctggaaga agagaaagca aggaagctat
1261 ccaccaaatc atcctcaccg gacatcgtcg gcaccatcaa tgccatactg gctaggatag
1321 ctgccgctag atccctcctg cacaaagcca aagaagaaat gttcagcagg atcagaccag
1381 tggttgttat gatctcaggc agacctggca ttggcaaaac tcatatggcg agacatctgg
1441 ctaaaaacat cgccaacact atgagtggtg accaaagagt cgggctcgtt ccgcgcaacg
1501 gggttgacca ctgggacgct tacagaggag agagggtggt cttgtgggat gactatggaa
1561 tggggaaccc tgtcaaagat gctttaacac tacaagagct agctgacaca tgcccagtca
1621 ctctaaactg tgacaggatc gagaacaagg gaaaaatgtt cgacagtgat gtcatcataa
1681 tcacgaccaa cctagtcaac cctgcacctc tcgattatgt gaacttcgag gcgtgttcta
1741 gaaggattga tttcttggtc tatgcagagt caccagaaat cgagaaggtt aagagagatt
1801 tccctggcca acctgacatg tggaaagact atttcaaaca agacttttcc catataaagc
1861 taaccctagc cccccaaggc ggatttgaca agaatggtaa caccccgcat ggtaagggca
1921 ccatgcgatc cctcacccag gggtccctga ccgcaaggat tgcaggcctt gttcatgaga
1981 gaaaggatga gttccagcta caagggaatg acctccagac atacaacttt gacaccaaca
2041 gggtctctgc gttcaggaaa ctggctgcag acaacaagta tgggatcatg gagacaatga
2101 gagtgggtgc agcgctcaaa aatgtcaaaa ctttggaaga tctgaaggtc gccttgagag
2161 atgtaaagtt taatgagtgt gaaataattt acaggagctc taagtaccgg gtctcttcca
2221 acggcaaggg ctctgtttct gttgacaaag ttgaggacca cacgtctcag actgcaaatg
2281 aagtgggctc agcactcctc agacttaggc aagcaagggc tagatattat gtcagctgct
2341 tccaagacct cgtctacact ctcatacagg ttgctggggc atcattcgtt gtcaacagga
2401 tctccaaaag gttctgctgg gaaaggtggg taaaaccaac cgaaacccaa gaagcgagtg
2461 agcccgaaaa ggaagtagcc caaggtagat gggagataga gcccaaggac acagaaccag
2521 aaggcaagaa gggcaagaac aagaaaggga gaggcaagaa acacacagcc ttctccagca
2581 aaggcctaag tgatgaagag tatgatgagt tcaagagaat cagagaagag aggaacggaa
2641 aatattccat tgaggaatac ctgcaagacc gggaccgcta ctatgaagaa gtggcagttg
2701 cccgagcaac agaagaggac ttttgtgaag aagaagaagc caaaataaga caaagaatct
2761 tccgcccgac aaggaagcaa agaaaagagg aaaggggggt acttggctta gtcactggtt
2821 cagatatcag gaagaggaga ccagacgatt ttcaaccaaa aggcaacctg tgggcagatg
2881 acactaggag tgtggactac aatgagagac ttgactttga ggctccacca agcgtctggt
2941 caagaatagt cccattgggc actggttggg gcttctgggt ttcatcaaac ctcctgatca
3001 caacaacaca cgtcctgccc aagggggtca aggaactctt tggggtcgaa gtcaaacaaa
3061 ttcaaattca caagtctgga gagttctgca ggtttaggtt cccaagacca atcaggccag
3121 atgtcacagg actcgtgttg gaggaaggtg ctcctgaagg tactgtctgt tctatactcg
3181 ttaagaggcc tacaggtgag atgatccccc tagcagtgag gatgggcacg catgcgtcca
3241 tgaaaataca gggtaggacc gtcggtggtc agatgggaat gcttctcaca ggggcaaatg
3301 caaagaacat ggatcttggc accggtcctg gcgactgcgg ttgcccttac atctataagc
3361 gtggcaacga catagttgtc gcgggtgtcc acaccgcagc agcccggggg ggcaacactg
3421 tcatttgtgc cactcaagga caagacggag aggcagtcct tgagggaaat gaagaccttg
3481 gcacctactg tggtgctcca attctgggcc ctggtaaagc gcctaaactc agcacaaaaa
3541 ctaaattttg gcgctcatca ccagatgccc tacctcctgg tacgtatgag cctgcttatc
3601 tggggggtaa ggatcccaga gtggaaaagg ggccttccct acagcaagtt atgagagacc
3661 agctgaaacc attcacagag cccaggggca aaccacctag accagcagtt ttagaagagg
3721 ctaaaaagac agtgatgaac gttctagaac agaccattga ccctgctaaa ccatggactt
3781 actcacaagc atgtgcttca ctggacaaga ccacttctag tggtagcccc caccatgtca
3841 agaaaaatga ccactggaat ggggagtctt ttactggtcc ccttgcggac caagcatcca
3901 aagccaacct catgtatgaa caggcaaagc atgtgcagcc cgtgtacacg gccgcgctca
3961 aagatgaact cgttaagact gataagatct acaagaaaat aaagaagaga cttctatggg
4021 ggtcagacct tggcacgatg atcaggtgtg ccagggcttt tggcggcctt atggacagta
4081 tgaaagcaag ttgtatagct cttccatgca gggtggggat gaacatgaat gaggatggcc
4141 ctatcatatt tgacaagcac tccaagtata ggtaccacta tgatgctgac tactctaggt
4201 gggactcaac ccagcagagg agcgttcttt ccgccgccat ggaggtgatg gtgaggttct
4261 ctgctgaacc agaattggca caagtggtcg cagaggacct tttagcgcct agccagctag
4321 atgttggcga ttttgtcatc tcagtccagg agggcctgcc atcaggagtc ccatgtacgt
4381 cgcaatggaa ttcaatagcg cactggattc taactctgag cgcaatggca gaagtgtcag
4441 gtctctcacc agacgttgtc caagcccact cctgtttctc attttatggc gacgatgaga
4501 tcgtcagcac tgacatcaac cttgacccca tgaaattgac acagaaactc agggagtatg
4561 gtctggtccc cacccggcct gataagactg aaggccctct cgttataact gaagacctca
4621 ccggcctgac attcctgcgc agatcgattg cacgggatcc agctggatgg tttggaaaat
4681 tggatcaaga ctcaatcctc aggcaattat actggacaag ggggcccaat catgaaaacc
4741 catacgagag catggttccc cactcccagc gagctactca gctcatggcc cttcttggtg
4801 aggcttcatt acatggtccc cagttttaca agaaagttag caagatggtc atcaatgaaa
4861 ttaagagtgg tggtctggag ttttatgtgc ccagacaaga ggccatgttt aggtggatga
4921 gattctctga cctcagcaca tgggagggcg atcgcaatct tgctcccgag agtgtgaatg
4981 aagatggcgt cgaatgacgc cgctccatca aatgatggtg ctgccaacct cgtaccagag
5041 gccaataatg aggttatggc acttgaaccg gtggtgggag cttcaatcgc agctcctgtt
5101 gtcggtcagc agaatataat tgacccctgg attagagaaa attttgttca agcaccacag
5161 ggcgagttta ctgtttcacc aaggaactcg cccggtgaga tgcttctaaa tcttgaattg
5221 ggcccagaac ttaaccccta tttgagtcat ttgtcccgca tgtacaatgg gtatgctggt
5281 ggcatgcagg ttcaggtggt cctagctggg aatgcgttca cagctgggaa gatcatcttt
5341 gccgctgtgc caccacattt ccctgtggat aatattagtg cagcccagat aactatgtgt
5401 ccccatgtga ttgttgatgt gagacagctt gaaccagtgc ttctacccct ccccgatata
5461 aggaacaggt tcttccatta caaccaggaa gacacccccc ggatgaggct tgtggccatg
5521 ctctacacgc ctctaagggc taattccgga gaggatgtgt tcactgtgtc ctgtagggtt
5581 ctgactcgcc ccgctccaga ttttgaattt acattcttag ttccaccaac tgttgaatca
5641 aaaacaaaac cctttactct acctattcta acccttggtg agttgtctaa ttcccgtttt
5701 cctgctgcca tagatatgct ttacactgat cccaatgaat caatagttgt tcagccccaa
5761 aatggcagat gtacccttga cggcacgctg caaggcacaa cacaattggt cccaacacag
5821 atttgtgcct ttagaggtac tctgattagt cagaatgcga gagcggccga tttaacagat
5881 tccccccaga gagcccgtaa tcacccgttg cacgtccagg tcaagaacct agatggcaca
5941 cagtatgacc caacagatga catccctgca gtcctggggg ctattgactt caagggtaca
6001 gtgttcggag tggcaagtca gagggacgtc tctggaacac aagaacaggg ccattatgcc
6061 acccgggctc atgaagcaca cattgacaca actgatccaa agtatgcacc taaattaggc
6121 acaattctca tcaaatctga atctactgat ttcaccacaa atcagcccat taggttcact
6181 ccagtgggca tgggcgacaa caattggaga cagtgggaat tgcctgacta ttctggtagt
6241 ttgactctaa atatgaacct tgcccctgct gtttccccat ctttccctgg tgaacgaatc
6301 cttttcttta ggtctatagt accatcagct ggaggctacg ggtctggcta tatagactgt
6361 ctcatacccc aggaatgggt gcaacatttc taccaggagg cagcaccttc acaatccgct
6421 gttgcactgg ttaggtatgt caaccccgac accgggcgta acatctttga ggccaagttg
6481 cacagagaag ggttcctcac cgtggccaat tctggaaaca atcctattgt ggttccccct
6541 aatggttatt ttagatttga ggcttgggtt aatcaattct atacacttgc ccccatggga
6601 tctggacagg ggcgtagaag agctcagtaa tggctggagc cttcttcgca gggttagcag
6661 gtgatgtcgt gtcgaacggc atcggttccc tcatcaatgc aggtgctaat gcagtcaatc
6721 aaaaggttga gtatgatttt aataagcaac ttcagatggc atcattcaaa catgataagg
6781 agatgttaca atcacaggtg ttggcaacca aacaactgca gcaggagatg atgaacataa
6841 agcaggggat gttgaccgct ggcggctttt ctcctgcgga cgctgctaga ggggctgtta
6901 acgctccaat gacaaaaata ctggactgga atggcacaag atattgggca cctaacagca
6961 tgaaaaccac aagctactca ggacaattct ctagtagccc tgtccacagg tctcctgctc
7021 ccctccagca cactgcccca ccaaagagta agttgcaaag tgattctgct agtgtgtata
7081 gctccccttc cactgtttct tcacaatcaa ctcattcaac agtgttgtct gcaggaactg
7141 ggtcgtccag atccaccccc acgtccacag caacctccac cctgtctagg actagcgact
7201 gggttagagg acagaatgaa aggcttagcc cgtttatggg tggtgctctc caaactactt
7261 ttgtcacacc accatcgagc aaagcttcat caaatgggac agtctcgacc gtgcccaaag
7321 ctgttttgga ctcctggact cctatgttta acacgcatag gcagcctctc ttcgcccact
7381 tccgtaggcg aggggagtca cagatttagt gaaaagagtg attaggc
//