Typing tool
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Typing tool
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Complete norovirus genomes
| ON706288 | GII.6 | |
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| GII.P7 |
ORF1: 1..5058
ORF2: 5039..6691
ORF3: 6691..7470
LOCUS ON706288 7495 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-037 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION ON706288
VERSION ON706288.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7495)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7495)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7495
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-037"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="23-Jul-2007"
/note="genotype: GII.6[P7]"
gene <1..5058
/gene="ORF1"
CDS <1..5058
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92933.1"
/translation="GSQNSVNDSINTTPSNKEEVGAFSNIKVGFKKMLGAVPKGTKAP
NSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVTGLPDLTTVQNEHENTPYTV
PPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELTP
ISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSIS
RTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLH
LLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPV
VMGGIGMVLGFTAERIGRMLSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEM
ETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIV
GTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGKPGIGKTHMARHLAKNIANTM
SGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCDR
IENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEIEKVKRDFPGQ
PDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERK
DEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKIALR
DVKFNECEIIYRNSRYRVSSNGKGSVSVDKVEDHTSQTANEVGSALLRLRQARARYYV
SCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEKEVSQGRWEIEPK
DTEPEGKKGKNKKGRGKKHTAFSNKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRY
YEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQ
PKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPKGV
KELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCSILIKRPTGEM
IPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIV
VAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFW
RSSPDALPPGTYEPAYLGGRDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAK
KTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQAS
KANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLM
DSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEV
MVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLS
AMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEG
PLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQ
RATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTW
EGDRNLAPEGVNEDGVE"
mat_peptide <1..966
/gene="ORF1"
/product="p48"
mat_peptide 967..2064
/gene="ORF1"
/product="NTPase"
mat_peptide 2065..2583
/gene="ORF1"
/product="p22"
mat_peptide 2584..2982
/gene="ORF1"
/product="VPg"
mat_peptide 2983..3525
/gene="ORF1"
/product="Pro"
mat_peptide 3526..5055
/gene="ORF1"
/product="RdRp"
gene 5039..6691
/gene="ORF2"
CDS 5039..6691
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92934.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6691..7470
/gene="ORF3"
CDS 6691..7470
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92935.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPSKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGLSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 ggcagtcaaa actctgtcaa tgacagtatc aacaccaccc cttcaaacaa agaagaggtt
61 ggtgcattct ccaacatcaa agttggattt aagaaaatgc tgggtgccgt gcctaagggc
121 actaaagcac ccaacagtga ccagcactgt ccaacagtca agatcgggcc caaaacacta
181 acagtccccc ctgaaccccc aaatggtgag gacactgtac agtttgatgc aaagtcggaa
241 actgtcactg ggctaccgga cttgacaacg gtgcaaaacg aacatgaaaa caccccatac
301 accgtccctc cactgagtga gagggaacac agaccagcca ctgagccgct tcctggcaca
361 atattggaga tgtgggatgg tgaattctac cactactccg tgtacgtcag cggcggcaaa
421 gctctggggg ttcacaaacc cccggcagct ataagcctcg cgacgataga gctcaccccc
481 atatctctat actggaggcc cgtttacacc cccaactacc tggtctgccc agacacgctg
541 aaaggtctcg ctggtgaaaa gttcccatac acggctttca gcaacaattg ctacaatttc
601 tgttgctggg tgcttgagct caatgacacg tggcttagca gaagaagcat ctccagaacc
661 accggcttct tcaaaccgta ccagtcttgg aacaggaagc ctctcccgac cgttgacgat
721 ggaaagatca aaaaggtggc caacgcgatc ctctgtgcac tcggctcgct gttctcaaag
781 ccaatcaagg acctgttagg caagctcaaa ccattgaact tgctacacct gctcgcgtcg
841 tgtgattgga cgtttgcggg tatagtggag acagtcatct taatggcgga acttttcaac
901 gtcttttgga ccccgccaga tgtctctaat tttatagcct ccctgatagg tgattttgaa
961 ttgcagggac ctgaggactt ggcggtggag cttgttcctg tggtcatggg tggtatagga
1021 atggttctcg gcttcacagc tgagaggata ggtcgcatgc tgtcgtccgc tgcatcaaca
1081 ctgcgggcgt gcaaagactt agggaactat gcccttgaca tacttaaatt agtcatgaag
1141 tggttcttcc caaagaaaga ggagaaagcc gagatggaaa ccttgagggc gatcgaggat
1201 gccgtcctag atatggaggc tataggtaac aaccatctca cgaccctcct caaggataaa
1261 gacagtctca cggccttcat gaagaccctg gatctagaag aagagaaggc aaggaagcta
1321 tccaccaagt catcctcgcc ggacatcgtc ggcactatca atgccatact ggctagaata
1381 gctgccgcta gatctctcct gcacaaggcc aaagaagaga tgttcagcag gatcaggcca
1441 gtggttgtca tgatctcagg caaacctggc attggcaaaa cccatatggc aaggcatttg
1501 gctaaaaaca tcgccaacac catgagtggt gaccaaagag tcgggctcgt tccgcgcaac
1561 ggggtcgacc actgggacgc ctacagggga gagagggtag tcttgtggga tgattatgga
1621 atggggaacc ctgtcaaaga tgctttaaca ctacaagaat tggctgacac atgcccagtc
1681 actctaaatt gtgataggat cgagaacaag gggaaaatgt tcgacagtga tgtcatcata
1741 attacgacca atctagtcaa ccctgcacct ctcgattatg tgaacttcga ggcgtgctct
1801 agaagaattg atttcttggt ctatgcagag tcaccagaaa ttgagaaggt taagagagat
1861 ttccctggtc aacctgacat gtggaaggac tatttcaaac aagacttttc ccacataaag
1921 ctaaccctag ccccccaagg cggatttgac aagaatggta acaccccgca tggtaagggc
1981 accatgcgat ccctcaccca ggggtccctg accgcaaggg ttgcaggcct tgttcatgag
2041 aggaaggatg agttccagct acaagggaac gacctccaga catacaactt tgacaccaac
2101 agggtctctg cattcaggaa actggctgca gacaacaagt atggaatcat ggaaacaatg
2161 agagtgggtg cagcgctcaa gaatgtcaag actttggaag atctgaaaat cgccttgaga
2221 gatgtaaagt tcaatgagtg tgaaataatt tacaggaact ctaggtatcg agtctcttcc
2281 aacggcaagg gctctgtttc tgttgacaaa gttgaggatc acacgtctca gactgcaaat
2341 gaagtgggat cagcactcct cagacttaga caagcaaggg ccagatatta tgtcagctgc
2401 ttccaagacc tcgtctacac tctcatacag gttgctgggg catcattcgt cgtcaacagg
2461 atctccaaaa ggttctgctg ggaaaggtgg gttaaaccaa ccgaaaccca agaagcgagt
2521 gagcccgaaa aggaagtatc tcaaggtaga tgggagattg agcccaagga cacagaacca
2581 gaaggcaaga agggtaagaa caagaaaggg agaggcaaga aacacacagc tttctccaac
2641 aaaggcctga gtgatgaaga gtatgatgag ttcaagagaa tcagagaaga gaggaacgga
2701 aaatactcca ttgaggaata cctgcaagac cgggaccgct actatgaaga agtggcagtt
2761 gcccgagcaa cagaagagga cttttgtgaa gaggaagaag ccaagataag acaaagaatc
2821 ttccgcccaa caaggaagca aagaaaggag gaaagggggg tgcttggttt agtcactggc
2881 tcagacatca ggaagaggag accagacgat tttcaaccaa aaggcaacct gtgggcagat
2941 gacactagga gtgtggatta caatgagaga cttgactttg aggctccccc aagcgtctgg
3001 tcaagaatag tcccattggg cactggttgg ggcttctggg tttcatctaa tctcctgatc
3061 acaacaacac acgtcctgcc caagggggtc aaggaactct ttggggttga agtcaaacaa
3121 atccaaatcc acaagtctgg agagttttgc aggtttaggt tcccaagacc aatcaggcca
3181 gatgttacag ggctcgtgtt ggaggaaggt gctccagaag gcactgtctg ttctatactc
3241 ataaagagac ccacaggtga gatgatcccc ctagcagtga ggatgggcac gcacgcatcc
3301 atgaaaatac agggtaggac cgtcggtggc cagatgggaa tgcttctcac aggggcaaac
3361 gcaaagaaca tggatcttgg cactggtcct ggtgactgcg gttgccctta catctataag
3421 cgtggcaacg acatagttgt cgcgggtgtc cacaccgcag cagcccgggg gggcaacact
3481 gttatatgtg caactcaagg gcaagatggg gaggcagtcc ttgaaggaaa cgaaaacctt
3541 ggcacttact gtggtgcccc aattttgggc cctggtaaag cgcctaaact cagcacaaaa
3601 accaaatttt ggcgctcatc accagatgcc ctgcctcctg gtacatatga acctgcttac
3661 ctggggggta gggatcccag agtggaaaaa gggccctccc tacagcaagt tatgagagac
3721 cagctgaaac ccttcacaga gcccaggggc aaaccaccta gaccagcagt tttagaagaa
3781 gctaaaaaga cagtgatgaa tgttctagaa cagaccattg accctgctaa gccatggacc
3841 tactcacaag catgtgcttc actggacaag accacttcta gtggcagccc ccaccatgtc
3901 aagaaaaatg accactggaa tggggagtct tttactggtc cccttgcgga ccaagcatcc
3961 aaagccaacc tcatgtatga acaggcaaag catgtgcagc ccgtgtacac ggccgcgctc
4021 aaagatgagc ttgttaagac tgataagatc tacaagaaga taaagaagag gcttctatgg
4081 gggtcagacc ttggtacgat gatcaggtgt gccagggctt ttggcggcct tatggacagt
4141 atgaaagcaa gttgcatagc tcttccatgc agggtgggga tgaacatgaa tgaggatggc
4201 cctatcatat ttgacaaaca ctccaagtac aggtatcact atgatgctga ctattctagg
4261 tgggactcaa cccagcaaag gagtattctt tccgccgcta tggaggtgat ggtgaggttc
4321 tctgctgaac cagaattggc acaagtggtc gcagaggacc ttttggcgcc tagccagcta
4381 gatgttggcg attttgtcat ctcagtccag gagggtctgc catcaggagt cccatgtaca
4441 tcacagtgga attcgatagc gcactggatt ctgactctga gcgcaatggc agaagtttca
4501 ggtctttcac cagacgttgt ccaagcccat tcctgttttt cattttatgg cgacgatgag
4561 atcgttagca ctgacatcaa ccttgacccc atgaaattga cacagaaact cagggagtat
4621 ggtctggtcc ccacccggcc tgacaagact gaaggtcccc tcgtcataac tgaagacctc
4681 accggcctga cattcctgcg tagatcgatt gcacgggatc cagctggatg gtttggaaaa
4741 ttggatcaag actcaattct caggcaatta tactggacaa gggggcccaa tcatgagaac
4801 ccatacgaga gcatggttcc ccattctcag cgagctaccc agctcatggc ccttcttggt
4861 gaggcttcat tgcatggtcc ccagttttac aagaaagtta gcaagatggt catcaatgag
4921 attaagagtg gtggtctgga attttatgtg cccagacaag aggccatgtt taggtggatg
4981 agattctctg acctcagcac atgggagggc gatcgcaatc ttgctcccga gggtgtgaat
5041 gaagatggcg tcgaatgacg ccgctccatc aaatgatggt gctgccaacc tcgtaccaga
5101 ggccaacaat gaggttatgg cacttgaacc ggtggtggga gcctcaatcg cagctcctgt
5161 tgtcggtcag caaaatataa ttgacccctg gattagagaa aattttgtcc aagcaccaca
5221 gggcgagttt actgtttcac caaggaattc gcccggtgaa atgcttctaa atcttgaatt
5281 gggccctgaa cttaaccctt acttgagtca tttgtcccgc atgtacaatg ggtatgctgg
5341 tggcatgcag gttcaggtgg tcctagctgg gaatgcgttc acagctggga agatcatctt
5401 tgccgccgtg ccaccacact tccctgtgga taatattagt gcagcccaga taactatgtg
5461 tccccatgtg attgttgatg tgagacagct tgaaccagtg cttctgcccc tccccgatat
5521 aaggaatagg ttcttccatt acaaccagga aaacacccct cggatgagac ttgtggccat
5581 gctctacacg cctctaaggg ctaattctgg tgaggacgtg ttcactgtgt cctgtagggt
5641 tctgactcgc cccgctccag attttgagtt tacattttta gttccaccaa ctgttgaatc
5701 aaaaacaaaa ccctttactc tacccatcct aactcttggt gagttgtcta actcccgttt
5761 tccggctgct atagatatgc tttataccga tcccaatgaa tcaatagttg ttcagcccca
5821 aaatggtagg tgcactcttg atggcacatt gcaaggcaca acacaattgg tcccaacaca
5881 gatttgtgcc tttagaggca ccctgatcag ccagactgcg agagcggtcg attcaacaga
5941 ttccccccag agagcccgtg atcacccgtt acacgtccag gtcaagaacc tagatggcac
6001 acagtatgac ccaacagatg atattcctgc agtcctgggg gctattgact tcaaaggtac
6061 agtgttcgga gtggctagtc agagggatgt ctctggaaca caagaacagg gccattatgc
6121 cacccgagcc catgaagcac acattgacac aactgaccca aagtatgcac ccaaattagg
6181 cacaattctt atcaaatctg aatctcctga tttcaataca aatcaaccca ttaggttcac
6241 tccagtgggc atgggtgaca acaattggag acagtgggaa ttgcctgact attctggtag
6301 attgacttta aatatgaacc ttgcccccgc tgtttcccca tctttccctg gtgaacgaat
6361 ccttttcttt aggtctatag taccatcagc tggaggctac gggtctggct atatagactg
6421 tctcataccc caggagtggg tgcaacactt ctaccaggag gcagcacctt cacaatctgc
6481 tgttgcactg gtcaggtatg ttaaccccga cactgggcgt aacatctttg aggccaagtt
6541 gcacagagaa gggttcctca ccgtggccaa ttctggaaac aatcctattg tagttccccc
6601 taatggttat tttagatttg aggcttgggt taaccaattt tatacacttg cccccatggg
6661 atctggacag gggcgtagaa gggctcagta atggctggag ccttcttcgc agggttagca
6721 ggtgatgtcg tgtcgaacgg catcggttcc cttatcaatg caggtgctaa tgcagttaat
6781 caaaaggttg agtatgattt taataagcaa cttcagatgg catcattcaa acatgacaag
6841 gagatgttac aatcacaggt gttggcaacc aaacaactgc agcaggaaat gatgaacata
6901 aagcaaggga tgttgaccgc tggcggcttc tcccctgcgg atgctgctag aggggctgtt
6961 aacgctccaa tgacaaaaat actggactgg aatggcacaa gatattgggc acctaacagc
7021 atgaaaacta caagctattc aggacagttc tctagtagcc ccgtccacag gtctcctgct
7081 cccccccagc atactgctcc atcaaaaagt aagttgcaaa gtgattctgc tagtgtgtat
7141 agctcccctt ctactgtttc ttcacaatca actcattcaa cagtgctgtc tgcaggaact
7201 gggttgtcca gatccacccc cacgtccaca gcaacctcca ccctgtctag aaccagcgac
7261 tgggttagag gacagaatga aaggcttagc ccgtttatgg atggtgctct ccaaactact
7321 tttgtcacac caccatcgag caaggcttca tcaaatggga cggtctcgac cgtgcccaag
7381 gctgttttgg actcctggac tcctatgttc aacacacata ggcagcctct cttcgcccat
7441 ttgcgcaggc gaggggagtc acaaatctag tgaaaagagt gattaggttt tcttt
//