Typing tool
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Typing tool
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Complete norovirus genomes
| ON706287 | GII.6 | |
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| GII.P7 |
ORF1: 1..5088
ORF2: 5069..6721
ORF3: 6721..7500
LOCUS ON706287 7528 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-036 nonstructural polyprotein (ORF1)
gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete
cds.
ACCESSION ON706287
VERSION ON706287.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7528)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7528)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7528
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-036"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="23-Jul-2006"
/note="genotype: GII.6[P7]"
gene <1..5088
/gene="ORF1"
CDS <1..5088
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92930.1"
/translation="MASNDATAALGSQNSVNDSINTTPSNKEEVGAFSNIKVGFKKML
GAVPKGTKAPNSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVTGLPDLTTVQ
NEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPPAA
ISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLELN
DTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKDLL
GKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQGP
EDLAVELVPVVMGGIGMVLGFTAERIGRMLSSAASTLRACKDLGNYALDILKLVMKWF
FPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKARKL
STKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGKPGIGKTHMAR
HLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQELAD
TCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESPEI
EKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSLTA
RVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKNVK
TLEDLKIALRDVKFNECEIIYRNSRYRVSSNDKGSVSVDKVEDHTSQTANEVGSALLR
LRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEKEV
SQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSNKGLSDEEYDEFKRIREERNGKYSI
EEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTGSD
IRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNLLI
TTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTVCS
ILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCGCP
YIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPGKA
PKLSTKTKFWRSSPDALPPGTYEPAYLGGRDPRVEKGPSLQQVMRDQLKPFTEPRGKP
PRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNGES
FTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGTMI
RCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDSTQQ
RSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQWN
SIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREYGL
VPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNHEN
PYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAMFR
WMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..996
/gene="ORF1"
/product="p48"
mat_peptide 997..2094
/gene="ORF1"
/product="NTPase"
mat_peptide 2095..2613
/gene="ORF1"
/product="p22"
mat_peptide 2614..3012
/gene="ORF1"
/product="VPg"
mat_peptide 3013..3555
/gene="ORF1"
/product="Pro"
mat_peptide 3556..5085
/gene="ORF1"
/product="RdRp"
gene 5069..6721
/gene="ORF2"
CDS 5069..6721
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92931.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6721..7500
/gene="ORF3"
CDS 6721..7500
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92932.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPSKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGLSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atggcgtcta acgacgctac cgctgccctt ggcagtcaaa actctgtcaa tgacagtatc
61 aacaccaccc cttcaaacaa agaagaggtt ggtgcattct ccaacatcaa agttggattt
121 aagaaaatgc tgggtgccgt gcctaagggc actaaagcac ccaacagtga ccagcactgt
181 ccaacagtca agatcgggcc caaaacacta acagtccccc ctgaaccccc aaatggtgag
241 gacactgtac agtttgatgc aaagtcggaa actgtcactg ggctaccgga cttgacaaca
301 gtgcaaaatg aacatgaaaa caccccatac accgtccctc cactgagtga gagggaacac
361 agaccagcca ctgagccgct tcctggcaca atattggaga tgtgggatgg tgaattctac
421 cactactccg tgtacgtcag cggcggcaaa gctctggggg ttcacaaacc cccggcagct
481 ataagcctcg cgacgataga gctcaccccc atatctctat actggaggcc cgtttacacc
541 cccaactacc tggtctgccc agacacgctg aaaggtctcg ctggtgaaaa gttcccatac
601 acggctttca gcaacaattg ctacaatttc tgttgctggg tgcttgagct caatgacacg
661 tggcttagca gaagaagcat ctccagaacc accggcttct tcaaaccgta ccagtcttgg
721 aacaggaagc ctctcccgac cgttgacgat ggaaagatca aaaaggtggc caacgcgatc
781 ctctgtgcac tcggctcgct gttctcaaag ccaatcaagg acctgttagg caagctcaaa
841 ccattgaact tgctacacct gctcgcgtcg tgtgattgga cgtttgcggg tatagtggag
901 acagtcatct taatggcgga acttttcaac gtcttttgga ccccgccaga tgtctctaat
961 tttatagcct ccctgatagg tgattttgaa ttgcagggac ctgaggactt ggcggtggag
1021 cttgttcctg tggtcatggg tggtatagga atggttctcg gcttcacagc tgagaggata
1081 ggtcgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagactt agggaactat
1141 gcccttgaca tacttaaatt agtcatgaag tggttcttcc caaagaaaga ggagaaagcc
1201 gagatggaaa ccttgagggc gatcgaggat gccgtcctag atatggaggc tataggtaac
1261 aaccatctca cgaccctcct caaggataaa gacagtctca cggccttcat gaagaccctg
1321 gatctagaag aagagaaggc aaggaagcta tccaccaagt catcctcgcc ggacatcgtc
1381 ggcactatca atgccatact ggctagaata gctgccgcta gatctctcct gcacaaggcc
1441 aaagaagaga tgttcagcag gatcagacca gtggttgtca tgatctcagg caaacctggc
1501 attggcaaaa cccatatggc aaggcatttg gctaaaaaca tcgccaacac catgagtggt
1561 gaccaaagag tcgggctcgt tccgcgcaac ggggtcgacc actgggacgc ctacagggga
1621 gagagggtag tcttgtggga tgattatgga atggggaacc ctgtcaaaga tgctttaaca
1681 ctacaagaat tggctgacac atgcccagtc actctaaatt gtgataggat cgagaacaag
1741 gggaaaatgt tcgacagtga tgtcatcata attacgacca atctagtcaa ccctgcacct
1801 ctcgattatg tgaacttcga ggcgtgctct agaagaattg atttcttggt ctatgcagag
1861 tcaccagaaa ttgagaaggt taagagagat ttccctggtc aacctgacat gtggaaggac
1921 tatttcaaac aagacttttc ccacataaag ctaaccctag ccccccaagg cggatttgac
1981 aagaatggta acaccccgca tggtaagggc accatgcgat ccctcaccca ggggtccctg
2041 accgcaaggg ttgcaggcct tgttcatgag aggaaggatg agttccagct acaagggaac
2101 gacctccaga catacaactt tgacaccaac agggtctctg cattcaggaa actggctgca
2161 gacaacaagt atggaatcat ggaaacaatg agagtgggtg cagcgctcaa gaatgtcaag
2221 actttggaag atctgaaaat cgccttgaga gatgtaaagt tcaatgagtg tgaaataatt
2281 tacaggaact ctaggtatcg agtctcttcc aacgacaagg gctctgtttc tgttgacaaa
2341 gttgaggatc acacgtctca gactgcaaat gaagtgggat cagcactcct cagacttaga
2401 caagcaaggg ccagatatta tgtcagctgc ttccaagacc tcgtctacac tctcatacag
2461 gttgctgggg catcattcgt cgtcaacagg atctccaaaa ggttctgctg ggaaaggtgg
2521 gttaaaccaa ccgaaaccca agaagcgagt gagcccgaaa aggaagtatc tcaaggtaga
2581 tgggagattg agcccaagga cacagaacca gaaggcaaga agggtaagaa caagaaaggg
2641 agaggcaaga aacacacagc tttctccaac aaaggcctga gtgatgaaga gtatgatgag
2701 ttcaagagaa tcagagaaga gaggaacgga aaatactcca ttgaggaata cctgcaagac
2761 cgggaccgct actatgaaga agtggcagtt gcccgagcaa cagaagagga cttttgtgaa
2821 gaggaagaag ccaagataag acaaagaatc ttccgcccaa caaggaagca aagaaaggag
2881 gaaagggggg tgcttggttt agtcactggc tcagacatca ggaagaggag accagacgat
2941 tttcaaccaa aaggcaacct gtgggcagat gacactagga gtgtggatta caatgagaga
3001 cttgactttg aggctccccc aagcgtctgg tcaagaatag tcccattggg cactggttgg
3061 ggcttctggg tttcatctaa tctcctgatc acaacaacac acgtcctgcc caagggggtc
3121 aaggaactct ttggggttga agtcaaacaa atccaaatcc acaagtctgg agagttttgc
3181 aggtttaggt tcccaagacc aatcaggcca gatgttacag ggctcgtgtt ggaggaaggt
3241 gctccagaag gcactgtctg ttctatactc ataaagagac ccacaggtga gatgatcccc
3301 ctagcagtga ggatgggcac gcacgcatcc atgaaaatac agggtaggac cgtcggtggc
3361 cagatgggaa tgcttctcac aggggcaaac gcaaagaaca tggatcttgg cactggtcct
3421 ggtgactgcg gttgccctta catctataag cgtggcaacg acatagttgt cgcgggtgtc
3481 cacaccgcag cagcccgggg gggcaacact gttatatgtg caactcaagg gcaagatggg
3541 gaggcagtcc ttgaaggaaa cgaaaacctt ggcacttact gtggtgcccc aattttgggc
3601 cctggtaaag cgcctaaact cagcacaaaa accaaatttt ggcgctcatc accagatgcc
3661 ctgcctcctg gtacatatga acctgcttac ctggggggta gggatcccag agtggaaaaa
3721 gggccctccc tacagcaagt tatgagagac cagctgaaac ccttcacaga gcccaggggc
3781 aaaccaccta gaccagcagt tttagaagaa gctaaaaaga cagtgatgaa tgttctagaa
3841 cagaccattg accctgctaa gccatggacc tactcacaag catgtgcttc actggacaag
3901 accacttcta gtggcagccc ccaccatgtc aagaaaaatg accactggaa tggggagtct
3961 tttactggtc cccttgcgga ccaagcatcc aaagccaacc tcatgtatga acaggcaaag
4021 catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc ttgttaagac tgataagatc
4081 tacaagaaga taaagaagag gcttctatgg gggtcagacc ttggtacgat gatcaggtgt
4141 gccagggctt ttggcggcct tatggacagt atgaaagcaa gttgcatagc tcttccatgc
4201 agggtgggga tgaacatgaa tgaggatggc cctatcatat ttgacaaaca ctccaagtac
4261 aggtatcact atgatgctga ctattctagg tgggactcaa cccagcaaag gagtattctt
4321 tccgccgcta tggaggtgat ggtgaggttc tctgctgaac cagaattggc acaagtggtc
4381 gcagaggacc ttttggcgcc tagccagcta gatgttggcg attttgtcat ctcagtccag
4441 gagggtctgc catcaggagt cccatgtaca tcacagtgga attcgatagc gcactggatt
4501 ctgactctga gcgcaatggc agaagtttca ggtctttcac cagacgttgt ccaagcccat
4561 tcctgttttt cattttatgg cgacgatgag atcgttagca ctgacatcaa ccttgacccc
4621 atgaaattga cacagaaact cagggagtat ggtctggtcc ccacccggcc tgacaagact
4681 gaaggtcccc tcgtcataac tgaagacctc accggcctga cattcctgcg tagatcgatt
4741 gcacgggatc cagctggatg gtttggaaaa ttggatcaag actcaattct caggcaatta
4801 tactggacaa gggggcccaa tcatgagaac ccatacgaga gcatggttcc ccattctcag
4861 cgagctaccc agctcatggc ccttcttggt gaggcttcat tgcatggtcc ccagttttac
4921 aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga attttatgtg
4981 cccagacaag aggccatgtt taggtggatg agattctctg acctcagcac atgggagggc
5041 gatcgcaatc ttgctcccga gggtgtgaat gaagatggcg tcgaatgacg ccgctccatc
5101 aaatgatggt gctgccaacc tcgtaccaga ggccaacaat gaggttatgg cacttgaacc
5161 ggtggtggga gcctcaatcg cagctcctgt tgtcggtcag caaaatataa ttgacccctg
5221 gattagagaa aattttgtcc aagcaccaca gggcgagttt actgtttcac caaggaattc
5281 gcccggtgaa atgcttctaa atcttgaatt gggccctgaa cttaaccctt acttgagtca
5341 tttgtcccgc atgtacaatg ggtatgctgg tggcatgcag gttcaggtgg tcctagctgg
5401 gaatgcgttc acagctggga agatcatctt tgccgccgtg ccaccacact tccctgtgga
5461 taatattagt gcagcccaga taactatgtg tccccatgtg attgttgatg tgagacagct
5521 tgaaccagtg cttctgcccc tccccgatat aaggaatagg ttcttccatt acaaccagga
5581 aaacacccct cggatgagac ttgtggccat gctctacacg cctctaaggg ctaattctgg
5641 tgaggacgtg ttcactgtgt cctgtagggt tctgactcgc cccgctccag attttgagtt
5701 tacattttta gttccaccaa ctgttgaatc aaaaacaaaa ccctttactc tacccatcct
5761 aactcttggt gagttgtcta actcccgttt tccggctgct atagatatgc tttataccga
5821 tcccaatgaa tcaatagttg ttcagcccca aaatggtagg tgcactcttg atggcacatt
5881 gcaaggcaca acacaattgg tcccaacaca gatttgtgcc tttagaggca ccctgatcag
5941 ccagactgcg agagcggtcg attcaacaga ttccccccag agagcccgtg atcacccgtt
6001 acacgtccag gtcaagaacc tagatggcac acagtatgac ccaacagatg atattcctgc
6061 agtcctgggg gctattgact tcaaaggtac agtgttcgga gtggctagtc agagggatgt
6121 ctctggaaca caagaacagg gccattatgc cacccgagcc catgaagcac acattgacac
6181 aactgaccca aagtatgcac ccaaattagg cacaattctt atcaaatctg aatctcctga
6241 tttcaataca aatcaaccca ttaggttcac tccagtgggc atgggtgaca acaattggag
6301 acagtgggaa ttgcctgact attctggtag attgacttta aatatgaacc ttgcccccgc
6361 tgtttcccca tctttccctg gtgaacgaat ccttttcttt aggtctatag taccatcagc
6421 tggaggctac gggtctggct atatagactg tctcataccc caggagtggg tgcaacactt
6481 ctaccaggag gcagcacctt cacaatctgc tgttgcactg gtcaggtatg ttaaccccga
6541 cactgggcgt aacatctttg aggccaagtt gcacagagaa gggttcctca ccgtggccaa
6601 ttctggaaac aatcctattg tagttccccc taatggttat tttagatttg aggcttgggt
6661 taaccaattt tatacacttg cccccatggg atctggacag gggcgtagaa gggctcagta
6721 atggctggag ccttcttcgc agggttagca ggtgatgtcg tgtcgaacgg catcggttcc
6781 cttatcaatg caggtgctaa tgcagttaat caaaaggttg agtatgattt taataagcaa
6841 cttcagatgg catcattcaa acatgacaag gagatgttac aatcacaggt gttggcaacc
6901 aaacaactgc agcaggaaat gatgaacata aagcaaggga tgttgaccgc tggcggcttc
6961 tcccctgcgg atgctgctag aggggctgtt aacgctccaa tgacaaaaat actggactgg
7021 aatggcacaa gatattgggc acctaacagc atgaaaacta caagctattc aggacagttc
7081 tctagtagcc ccgtccacag gtctcctgct cccccccagc atactgctcc atcaaaaagt
7141 aagttgcaaa gtgattctgc tagtgtgtat agctcccctt ctactgtttc ttcacaatca
7201 actcattcaa cagtgctgtc tgcaggaact gggttgtcca gatccacccc cacgtccaca
7261 gcaacctcca ccctgtctag aaccagcgac tgggttagag gacagaatga aaggcttagc
7321 ccgtttatgg atggtgctct ccaaactact tttgtcacac caccatcgag caaggcttca
7381 tcaaatggga cggtctcgac cgtgcccaag gctgttttgg actcctggac tcctatgttc
7441 aacacacata ggcagcctct cttcgcccat ttgcgcaggc gaggggagtc acaaatctag
7501 tgaaaagagt gattaggttt tctttccc
//