Typing tool
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Typing tool
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Complete norovirus genomes
| ON706286 | GII.6 | |
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| GII.P7 |
ORF1: 1..5094
ORF2: 5075..6727
ORF3: 6727..7506
LOCUS ON706286 7539 bp RNA linear VRL 13-JUN-2022
DEFINITION Norovirus GII isolate G22-035 nonstructural polyprotein (ORF1), VP1
(ORF2), and VP2 (ORF3) genes, complete cds.
ACCESSION ON706286
VERSION ON706286.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7539)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Enteric virus diversity in sewages collected during last decade
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7539)
AUTHORS Le Guyader,S.F. and Schaeffer,J.
TITLE Direct Submission
JOURNAL Submitted (08-JUN-2022) LSEM, IFREMER, Rue de l'Ile d'Yeu, NANTES
44311, France
COMMENT ##Assembly-Data-START##
Assembly Method :: metaspades v. 3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7539
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="G22-035"
/isolation_source="sewage"
/db_xref="taxon:122929"
/country="France"
/collection_date="28-Feb-2006"
/note="genotype: GII.6[P7]"
gene 1..5094
/gene="ORF1"
CDS 1..5094
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URW92927.1"
/translation="MKMASNDATAALGSQNSVNDSINTTPSNKEEVGAFSNIKVGFKK
MLGAVPKGTKAPNSDQHCPTVKIGPKTLTVPPEPPNGEDTVQFDAKSETVTGLPDLTT
VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSGGKALGVHKPP
AAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
LNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFIASLIGDFELQ
GPEDLAVELVPVVMGGIGMVLGFTAERIGRMLSSAASTLRACKDLGNYALDILKLVMK
WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGKPGIGKTHM
ARHLAKNIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGNPVKDALTLQEL
ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRIDFLVYAESP
EIEKVKRDFPGQPDMWKDYFKQDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
TARVAGLVHERKDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
VKTLEDLKIALRDVKFNECEIIYRNSRYRVSSNGKGSVSVDKVEDHTSQTANEVGSAL
LRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTETQEASEPEK
EVSQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSNKGLSDEEYDEFKRIREERNGKY
SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTRKQRKEERGVLGLVTG
SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
LITTTHVLPKGVKELFGVEVKQIQIHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNENLGTYCGAPILGPG
KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGRDPRVEKGPSLQQVMRDQLKPFTEPRG
KPPRPAVLEEAKKTVMNVLEQTIDPAKPWTYSQACASLDKTTSSGSPHHVKKNDHWNG
ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide 1..1002
/gene="ORF1"
/product="p48"
mat_peptide 1003..2100
/gene="ORF1"
/product="NTPase"
mat_peptide 2101..2619
/gene="ORF1"
/product="p22"
mat_peptide 2620..3018
/gene="ORF1"
/product="VPg"
mat_peptide 3019..3561
/gene="ORF1"
/product="Pro"
mat_peptide 3562..5091
/gene="ORF1"
/product="RdRp"
gene 5075..6727
/gene="ORF2"
CDS 5075..6727
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URW92928.1"
/translation="MKMASNDAAPSNDGAANLVPEANNEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAVDSTDSPQRARDHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESPDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6727..7506
/gene="ORF3"
CDS 6727..7506
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URW92929.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLTAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPPQHTAPSKSKLQSDSASVYSSPSTVSSQS
THSTVLSAGTGLSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 atgaagatgg cgtctaacga cgctaccgct gcccttggca gtcaaaactc tgtcaatgac
61 agtatcaaca ccaccccttc aaacaaagaa gaggttggtg cattctccaa catcaaagtt
121 ggatttaaga aaatgctggg tgccgtgcct aagggcacta aagcacccaa cagtgaccag
181 cactgtccaa cagtcaagat cgggcccaaa acactaacag tcccccctga acccccaaat
241 ggtgaggaca ctgtacagtt tgatgcaaag tcggaaactg tcactgggct accggacttg
301 acaacagtgc aaaatgaaca tgaaaacacc ccatacaccg tccctccact gagtgagagg
361 gaacacagac cagccactga gccgcttcct ggcacaatat tggagatgtg ggatggtgaa
421 ttctaccact actccgtgta cgtcagcggc ggcaaagctc tgggggttca caaacccccg
481 gcagctataa gcctcgcgac gatagagctc acccccatat ctctatactg gaggcccgtt
541 tacaccccca actacctggt ctgcccagac acgctgaaag gtctcgctgg tgaaaagttc
601 ccatacacgg ctttcagcaa caattgctac aatttctgtt gctgggtgct tgagctcaat
661 gacacgtggc ttagcagaag aagcatctcc agaaccaccg gcttcttcaa accgtaccag
721 tcttggaaca ggaagcctct cccgaccgtt gacgatggaa agatcaaaaa ggtggccaac
781 gcgatcctct gtgcactcgg ctcgctgttc tcaaagccaa tcaaggacct gttaggcaag
841 ctcaaaccat tgaacttgct acacctgctc gcgtcgtgtg attggacgtt tgcgggtata
901 gtggagacag tcatcttaat ggcggaactt ttcaacgtct tttggacccc gccagatgtc
961 tctaatttta tagcctccct gataggtgat tttgaattgc agggacctga ggacttggcg
1021 gtggagcttg ttcctgtggt catgggtggt ataggaatgg ttctcggctt cacagctgag
1081 aggataggtc gcatgctgtc gtccgctgca tcaacactgc gggcgtgcaa agacttaggg
1141 aactatgccc ttgacatact taaattagtc atgaagtggt tcttcccaaa gaaagaggag
1201 aaagccgaga tggaaacctt gagggcgatc gaggatgccg tcctagatat ggaggctata
1261 ggtaacaacc atctcacgac cctcctcaag gataaagaca gtctcacggc cttcatgaag
1321 accctggatc tagaagaaga gaaggcaagg aagctatcca ccaagtcatc ctcgccggac
1381 atcgtcggca ctatcaatgc catactggct agaatagctg ccgctagatc tctcctgcac
1441 aaggccaaag aagagatgtt cagcaggatc aggccagtgg ttgtcatgat ctcaggcaaa
1501 cctggcattg gcaaaaccca tatggcaagg catttggcta aaaacatcgc caacaccatg
1561 agtggtgacc aaagagtcgg gctcgttccg cgcaacgggg tcgaccactg ggacgcctac
1621 aggggagaga gggtagtctt gtgggatgat tatggaatgg ggaaccctgt caaagatgct
1681 ttaacactac aagaattggc tgacacatgc ccagtcactc taaattgtga taggatcgag
1741 aacaagggga aaatgttcga cagtgatgtc atcataatta cgaccaatct agtcaaccct
1801 gcacctctcg attatgtgaa cttcgaggcg tgctctagaa gaattgattt cttggtctat
1861 gcagagtcac cagaaattga gaaggttaag agagatttcc ctggtcaacc tgacatgtgg
1921 aaggactatt tcaaacaaga cttttcccac ataaagctaa ccctagcccc ccaaggcgga
1981 tttgacaaga atggtaacac cccgcatggt aagggcacca tgcgatccct cacccagggg
2041 tccctgaccg caagggttgc aggccttgtt catgagagga aggatgagtt ccagctacaa
2101 gggaacgacc tccagacata caactttgac accaacaggg tctctgcatt caggaaactg
2161 gctgcagaca acaagtatgg aatcatggaa acaatgagag tgggtgcagc gctcaagaat
2221 gtcaagactt tggaagatct gaaaatcgcc ttgagagatg taaagttcaa tgagtgtgaa
2281 ataatttaca ggaactctag gtatcgagtc tcttccaacg gcaagggctc tgtttctgtt
2341 gacaaagttg aggatcacac gtctcagact gcaaatgaag tgggatcagc actcctcaga
2401 cttagacaag caagggccag atattatgtc agctgcttcc aagacctcgt ctacactctc
2461 atacaggttg ctggggcatc attcgtcgtc aacaggatct ccaaaaggtt ctgctgggaa
2521 aggtgggtta aaccaaccga aacccaagaa gcgagtgagc ccgaaaagga agtatctcaa
2581 ggtagatggg agattgagcc caaggacaca gaaccagaag gcaagaaggg taagaacaag
2641 aaagggagag gcaagaaaca cacagctttc tccaacaaag gcctgagtga tgaagagtat
2701 gatgagttca agagaatcag agaagagagg aacggaaaat actccattga ggaatacctg
2761 caagaccggg accgctacta tgaagaagtg gcagttgccc gagcaacaga agaggacttt
2821 tgtgaagagg aagaagccaa gataagacaa agaatcttcc gcccaacaag gaagcaaaga
2881 aaggaggaaa ggggggtgct tggtttagtc actggctcag acatcaggaa gaggagacca
2941 gacgattttc aaccaaaagg caacctgtgg gcagatgaca ctaggagtgt ggattacaat
3001 gagagacttg actttgaggc tcccccaagc gtctggtcaa gaatagtccc attgggcact
3061 ggttggggct tctgggtttc atctaatctc ctgatcacaa caacacacgt cctgcccaag
3121 ggggtcaagg aactctttgg ggttgaagtc aaacaaatcc aaatccacaa gtctggagag
3181 ttttgcaggt ttaggttccc aagaccaatc aggccagatg ttacagggct cgtgttggag
3241 gaaggtgctc cagaaggcac tgtctgttct atactcataa agagacccac aggtgagatg
3301 atccccctag cagtgaggat gggcacgcac gcatccatga aaatacaggg taggaccgtc
3361 ggtggccaga tgggaatgct tctcacaggg gcaaacgcaa agaacatgga tcttggcact
3421 ggtcctggtg actgcggttg cccttacatc tataagcgtg gcaacgacat agttgtcgcg
3481 ggtgtccaca ccgcagcagc ccgggggggc aacactgtta tatgtgcaac tcaagggcaa
3541 gatggggagg cagtccttga aggaaacgaa aaccttggca cttactgtgg tgccccaatt
3601 ttgggccctg gtaaagcgcc taaactcagc acaaaaacca aattttggcg ctcatcacca
3661 gatgccctgc ctcctggtac atatgaacct gcttacctgg ggggtaggga tcccagagtg
3721 gaaaaagggc cctccctaca gcaagttatg agagaccagc tgaaaccctt cacagagccc
3781 aggggcaaac cacctagacc agcagtttta gaagaagcta aaaagacagt gatgaatgtt
3841 ctagaacaga ccattgaccc tgctaagcca tggacctact cacaagcatg tgcttcactg
3901 gacaagacca cttctagtgg cagcccccac catgtcaaga aaaatgacca ctggaatggg
3961 gagtctttta ctggtcccct tgcggaccaa gcatccaaag ccaacctcat gtatgaacag
4021 gcaaagcatg tgcagcccgt gtacacggcc gcgctcaaag atgagcttgt taagactgat
4081 aagatctaca agaagataaa gaagaggctt ctatgggggt cagaccttgg tacgatgatc
4141 aggtgtgcca gggcttttgg cggccttatg gacagtatga aagcaagttg catagctctt
4201 ccatgcaggg tggggatgaa catgaatgag gatggcccta tcatatttga caaacactcc
4261 aagtacaggt atcactatga tgctgactat tctaggtggg actcaaccca gcaaaggagt
4321 attctttccg ccgctatgga ggtgatggtg aggttctctg ctgaaccaga attggcacaa
4381 gtggtcgcag aggacctttt ggcgcctagc cagctagatg ttggcgattt tgtcatctca
4441 gtccaggagg gtctgccatc aggagtccca tgtacatcac agtggaattc gatagcgcac
4501 tggattctga ctctgagcgc aatggcagaa gtttcaggtc tttcaccaga cgttgtccaa
4561 gcccattcct gtttttcatt ttatggcgac gatgagatcg ttagcactga catcaacctt
4621 gaccccatga aattgacaca gaaactcagg gagtatggtc tggtccccac ccggcctgac
4681 aagactgaag gtcccctcgt cataactgaa gacctcaccg gcctgacatt cctgcgtaga
4741 tcgattgcac gggatccagc tggatggttt ggaaaattgg atcaagactc aattctcagg
4801 caattatact ggacaagggg gcccaatcat gagaacccat acgagagcat ggttccccat
4861 tctcagcgag ctacccagct catggccctt cttggtgagg cttcattgca tggtccccag
4921 ttttacaaga aagttagcaa gatggtcatc aatgagatta agagtggtgg tctggaattt
4981 tatgtgccca gacaagaggc catgtttagg tggatgagat tctctgacct cagcacatgg
5041 gagggcgatc gcaatcttgc tcccgagggt gtgaatgaag atggcgtcga atgacgccgc
5101 tccatcaaat gatggtgctg ccaacctcgt accagaggcc aacaatgagg ttatggcact
5161 tgaaccggtg gtgggagcct caatcgcagc tcctgttgtc ggtcagcaaa atataattga
5221 cccctggatt agagaaaatt ttgtccaagc accacagggc gagtttactg tttcaccaag
5281 gaattcgccc ggtgaaatgc ttctaaatct tgaattgggc cctgaactta acccttactt
5341 gagtcatttg tcccgcatgt acaatgggta tgctggtggc atgcaggttc aggtggtcct
5401 agctgggaat gcgttcacag ctgggaagat catctttgcc gccgtgccac cacacttccc
5461 tgtggataat attagtgcag cccagataac tatgtgtccc catgtgattg ttgatgtgag
5521 acagcttgaa ccagtgcttc tgcccctccc cgatataagg aataggttct tccattacaa
5581 ccaggaaaac acccctcgga tgagacttgt ggccatgctc tacacgcctc taagggctaa
5641 ttctggtgag gacgtgttca ctgtgtcctg tagggttctg actcgccccg ctccagattt
5701 tgagtttaca tttttagttc caccaactgt tgaatcaaaa acaaaaccct ttactctacc
5761 catcctaact cttggtgagt tgtctaactc ccgttttccg gctgctatag atatgcttta
5821 taccgatccc aatgaatcaa tagttgttca gccccaaaat ggtaggtgca ctcttgatgg
5881 cacattgcaa ggcacaacac aattggtccc aacacagatt tgtgccttta gaggcaccct
5941 gatcagccag actgcgagag cggtcgattc aacagattcc ccccagagag cccgtgatca
6001 cccgttacac gtccaggtca agaacctaga tggcacacag tatgacccaa cagatgatat
6061 tcctgcagtc ctgggggcta ttgacttcaa aggtacagtg ttcggagtgg ctagtcagag
6121 ggatgtctct ggaacacaag aacagggcca ttatgccacc cgagcccatg aagcacacat
6181 tgacacaact gacccaaagt atgcacccaa attaggcaca attcttatca aatctgaatc
6241 tcctgatttc aatacaaatc aacccattag gttcactcca gtgggcatgg gtgacaacaa
6301 ttggagacag tgggaattgc ctgactattc tggtagattg actttaaata tgaaccttgc
6361 ccccgctgtt tccccatctt tccctggtga acgaatcctt ttctttaggt ctatagtacc
6421 atcagctgga ggctacgggt ctggctatat agactgtctc ataccccagg agtgggtgca
6481 acacttctac caggaggcag caccttcaca atctgctgtt gcactggtca ggtatgttaa
6541 ccccgacact gggcgtaaca tctttgaggc caagttgcac agagaagggt tcctcaccgt
6601 ggccaattct ggaaacaatc ctattgtagt tccccctaat ggttatttta gatttgaggc
6661 ttgggttaac caattttata cacttgcccc catgggatct ggacaggggc gtagaagggc
6721 tcagtaatgg ctggagcctt cttcgcaggg ttagcaggtg atgtcgtgtc gaacggcatc
6781 ggttccctta tcaatgcagg tgctaatgca gttaatcaaa aggttgagta tgattttaat
6841 aagcaacttc agatggcatc attcaaacat gacaaggaga tgttacaatc acaggtgttg
6901 gcaaccaaac aactgcagca ggaaatgatg aacataaagc aagggatgtt gaccgctggc
6961 ggcttctccc ctgcggatgc tgctagaggg gctgttaacg ctccaatgac aaaaatactg
7021 gactggaatg gcacaagata ttgggcacct aacagcatga aaactacaag ctattcagga
7081 cagttctcta gtagccccgt ccacaggtct cctgctcccc cccagcatac tgctccatca
7141 aaaagtaagt tgcaaagtga ttctgctagt gtgtatagct ccccttctac tgtttcttca
7201 caatcaactc attcaacagt gctgtctgca ggaactgggt tgtccagatc cacccccacg
7261 tccacagcaa cctccaccct gtctagaacc agcgactggg ttagaggaca gaatgaaagg
7321 cttagcccgt ttatggatgg tgctctccaa actacttttg tcacaccacc atcgagcaag
7381 gcttcatcaa atgggacggt ctcgaccgtg cccaaggctg ttttggactc ctggactcct
7441 atgttcaaca cacataggca gcctctcttc gcccatttgc gcaggcgagg ggagtcacaa
7501 atctagtgaa aagagtgatt aggttttctt tcccttttt
//