Typing tool
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Typing tool
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Complete norovirus genomes
| ON569431 | GII.3 | |
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| GII.P12 |
ORF1: 5..5104
ORF2: 5085..6731
ORF3: 6731..7495
LOCUS ON569431 7556 bp RNA linear VRL 28-MAY-2022
DEFINITION Norovirus GII isolate human, complete genome.
ACCESSION ON569431
VERSION ON569431.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7556)
AUTHORS Chiu,S.-C., Hu,S.-C. and Lin,J.-H.
TITLE Taiwan Norovirus Genogroup II
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7556)
AUTHORS Chiu,S.-C., Hu,S.-C. and Lin,J.-H.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2022) Viral Enteric and Diarrheal Disease
Laboratory, CDC, Taiwan, Kunyang, Taipei 11561, Taiwan
COMMENT ##Assembly-Data-START##
Assembly Method :: Flye v. MAY-2022
Sequencing Technology :: Nanopore
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7556
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="human"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Taiwan"
/collection_date="20-Jan-2020"
/note="genotype: GII.3"
gene 5..5104
/gene="ORF1"
CDS 5..5104
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="URA09049.1"
/translation="MKMASNDASAAAAAYSNNDNAKSSSDGVLSSMAVTFKRALGARQ
KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKGGVSGLPELTTVWQPD
ETNTVFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPIMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNTTVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKKQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILGQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide 5..994
/gene="ORF1"
/product="p48"
mat_peptide 995..2092
/gene="ORF1"
/product="NTPase"
mat_peptide 2093..2629
/gene="ORF1"
/product="p22"
mat_peptide 2630..3028
/gene="ORF1"
/product="VPg"
mat_peptide 3029..3571
/gene="ORF1"
/product="Pro"
mat_peptide 3572..5101
/gene="ORF1"
/product="RdRp"
gene 5085..6731
/gene="ORF2"
CDS 5085..6731
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="URA09050.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPAPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6731..7495
/gene="ORF3"
CDS 6731..7495
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="URA09051.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgcttata gcaacaacga
61 caacgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
121 cctcggggcg cggcaaaaac agcctccccc gagggaaata ccacaaaggc ctccacggcc
181 acccacccca gaattggtca aaaagatccc tcctccccca cccaatgggg aggatgaact
241 agtggtctct tatagcgcca aaggtggcgt ttctggtttg cctgaactca ccactgtctg
301 gcaaccggat gagaccaaca cggtgttcag tgttccccct ctcaaccaga gggagaacag
361 ggacgccaag gagccgctga ccggaacaat cctggaaatg tgggacgggg agatctatca
421 ttatggtctg tatgtggagc gaggccttgt actcggtgtg cacaaaccac cagctgccat
481 cagcctcgcc aaggttgaac tagcaccact ctctctgttt tggaggccag tgtacacacc
541 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
601 agcctttgat aacaactgct atgccttctg ttgttgggtt ctggacctaa acgactcgtg
661 gttgtgcagg agaatgatcc agagaacaac tggctttttc agaccttacc aagaatggaa
721 caggaaaccc ctccccatca tggatgactc taaattgaag aaggtagcca acatattctt
781 gtgtgcgcta tcttcactat tcactaggcc catcaaagac ataataggaa aagtgagacc
841 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
961 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtagaact
1021 cgtaccagta gtgatgggag ggattggttt ggtgttagga ttcaccaaag agaagatcgg
1081 aaaaatgttg tcgtccgctg cttccacctt aagagcttgt aaagacctcg gtgcatacgg
1141 gctggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aagcaaatga
1201 gctagctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaagcaa ttgagaacaa
1261 ccacatgact gccctcctca aagacaaaga cagcttggca acctacatga ggacccttga
1321 cctcgaggag gagaaagcca ggaagctctc aaccaagtct gcttcacctg acatcgtggg
1381 cacgatcaac gctcttctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1501 agggaaaact caccttgcca gggagctggc caagaagatc gcagcttcac tcacagggga
1561 ccagcgcgtg ggtctcatcc ctcgcaatgg cgttgaccac tgggatgcat acaagggaga
1621 aagagtcgtc ctatgggacg attatggaat gagcaatccc atccacgatg ccctcaggtt
1681 acaggaactt gctgacacct gtccccttac gctaaactgt gacaggattg agaacaaagg
1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctagccaacc cagcaccatt
1801 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1861 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1921 atttagctct gacttctcgc acataaaact ggcgctggct ccgcagggtg gcttcgacaa
1981 gaacggaaac accccacacg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
2041 cgcccgagca tcagggctac tccatgagag gttagatgag tacgagctgc agggcccaac
2101 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
2161 aaacaagtat ggattgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2221 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2281 tggtggctgc acctacaggc ttgagtctga tggcaagggt gacgtaaaag ttgacagagt
2341 tcagaacacc actgtacaga ccaacaatga gcttgccggc gcactacacc atcttaggtg
2401 cgccagaatc agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2461 cgctggggct gcatttgtta ccacacgcat tgtcaagcgc atgaacatac aagatctctg
2521 gtccaagcca caggtggagg acacagagga aatcgctagc aaggatgggt gcccaaaacc
2581 ccaggatgat gaagagtttg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2641 gaagaacaag tctggccgtg gcaagaagca cacagcgttt tcaagtaaag gtctcagtga
2701 tgaagagtac gatgagtaca aaagaattag agaagaaaga aatggcaaat actccataga
2761 ggaatacctc caggacagag acaggtatta tgaggaggtg gccatcgcca gggcaaccga
2821 agaggacttc tgtgaagaag aagaggccaa gatccgacag aggatcttca ggccaacaag
2881 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaatcaggaa
2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
3001 tgactacaat gagaaactca actttgaagc cccaccaagc atctggtcga ggatagtcaa
3061 ctttggctca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
3121 cataccccag ggtgcacagg agttctttgg tgtacccatc aaacaaatcc agatacacaa
3181 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgacg tgacaggcat
3241 gatcttagaa gaaggtgcac ccgaaggaac cgtggtcaca ttactcatca aaagaccaac
3301 tggagagctc atgcccctgg cagccaggat gggaacccac gcaaccatga agaaacaagg
3361 gcgcactgtt ggaggtcaaa tgggcatgct cctgacagga tccaacgcca agagtatgga
3421 tctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3481 cgtggtcatt ggggtccata cagctgccgc ccgtggagga aacactgtca tttgtgctac
3541 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3601 agcaccaatc ttaggtccag gaagtgcccc aaaactcagc accaagacca agttctggag
3661 atcatccacg gcaccactcc cacctggtac ctatgaacca gcttacctcg gtggcaagga
3721 ccccagagtt aagggtggcc cttcactgca acaagttatg agggatcaac tgaaaccatt
3781 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3841 cgtcaatgtc ctagaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3901 cgcatcccta gacaagacca cttctagcgg ccatccgcac cacatgcgga agaatgactg
3961 ctggaacggg gagtccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
4021 gtttgaggag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
4081 caagactgac aaaatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
4141 gaccatgatt cggtgcgctc gagcattcgg gggtctgatg gaggaactca aagcacattg
4201 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccca tcatctttga
4261 gagacactcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4321 acaaagagcc gtgttggcag cagccttgga aatcatggtc aagttttccc cagagccaca
4381 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4441 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga
4561 catcattcag gctaattctc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4621 cataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4681 ccgccctgac aaaactgaag ggcctcttgt catttccgaa gacctaaatg gcctaacctt
4741 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagctc
4801 aatacttgga caaatgtact ggactagggg ccccaaccat gaagatccat ctgaaacaat
4861 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggtgagg cagcactcca
4921 cggcccagca ttctacagca aaatcagtaa actggtcatt gcagagttga aggagggtgg
4981 catggatttt tacgtgccaa gacaagagcc gatgttcaga tggatgagat tctcggatct
5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
5101 atgacgccac cccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
5161 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcacc ggccagcaaa
5221 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5281 tgtctcctag gaattcccct ggtgaagtgc tcctcaattt ggaattgggc ccagagataa
5341 acccctatct ggcccatctt gctagaatgt acaatggtta tgcaggtggg tttgaagtgc
5401 aggtagtcct ggctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5461 ctaacttccc aattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5521 tggatgtcag gcagctggaa ccagtcaacc tcccgatgcc tgacgttcgc aataacttct
5581 tccactacaa ccaggggtct gattcgagat tgcgcttggt tgcaatgctg tatacacctc
5641 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5701 ctagtcctga attttcgttt aacttccttg tgccacccac tgtggagtca aagacaaaac
5761 cttttaccct cccaattctg actatctctg aaatgtctaa ttctaggttt ccagcgccga
5821 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgtcaa aatggacgcg
5881 tcactcttga tggcgagttg atgggcacca ctcagctcct acctagtcaa atctgtgctt
5941 tcaggggcgt gctcactagg tcaacaagca gggctagtga ccaggccgac acagcaaccc
6001 ctagattgtt taattattat tggcacatac aattggataa tctaaatggg actccttatg
6061 atcctgcaga agacatacca ggccccctag ggacaccaga tttccggggt aaagtctttg
6121 gcgtggccag tcaaagaaac cctgatagta caactagagc acatgaagca aaggtggaca
6181 caacagctgg tcgcttcacc ccaaaactag gctcattaga gatatccact gaatctggtg
6241 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccatgaat
6301 cagacttcca gcaatggtcc ttacccgatt actctggcca gttcactcac aacatgaact
6361 tagccccagc tgttgctccc aacttccctg gtgagcagct ccttttcttc cgctcacagt
6421 taccatcttc tggcgggcga tccaatggga ttctagattg cctggtcccc caagaatggg
6481 tccagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctctg gttagatatg
6541 tcaaccctga cactggtaga gtgttgtttg aggccaagct gcacaaatta ggtttcatga
6601 ctatagctaa gaatggtgac tctccaataa ctgtcccccc aaatggatac tttaggtttg
6661 aatcttgggt gaacccattt tatacacttg cccccatggg aactgggaat gggcgtagaa
6721 gagttcaata atggctggtg cttttatagc aggattagct ggtgatatat tcacaaacac
6781 tgtagggtct ctagttaatg caggggctaa tgctattaat caaaaagttg attttgaaaa
6841 taataaatac ttgcaaaatg cttccttcaa tcatgataag gaaatgttaa atgcacagat
6901 tgaggcaaca aagagattac aggctgatat gattgccatc aaacaggggg ttttgaccgc
6961 tggcggcttt tcccccactg atgcagctcg cggggcaatt aacgccccca tgacaaaagt
7021 cctagattgg aatggaacaa ggtactgggc accaagcgcc acctctacaa cctcgatgtc
7081 gggtggcttc acaaaccagg ctgtgcacag gaccacgcca aattttaaaa tgaaccaggc
7141 ccccagatcc acacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7201 tctaagctca cactcgtccg gatcgtctcg atccagcggg tctacagttg ctagctcact
7261 accatcctct aacaggacta gggactgggt caatcagcaa aatttcaatt tggaaccaca
7321 catgcctggg tcacttagga cggcttttgt cactccacca tctagtacag cctctagttc
7381 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7441 gcgcagacag ccgctattcg cacacctccg tagaaggggg gagtcaaatg tttagtgaaa
7501 aggttatctt aaatttgatt taaattggat ttgatttgga accttttaaa aaaaaa
//