Typing tool
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Typing tool
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Complete norovirus genomes
| ON033826 | GI.3 | |
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| GI.P10 |
ORF1: 1..5392
ORF2: 5376..7004
ORF3: 7004..7645
LOCUS ON033826 7726 bp RNA linear VRL 26-MAR-2022
DEFINITION Norovirus GI isolate 3718VLC nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION ON033826
VERSION ON033826.1
KEYWORDS .
SOURCE Norovirus GI
ORGANISM Norovirus GI
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7726)
AUTHORS Navarro-Lleo,N., Santiso-Bellon,C., Vila-Vicent,S.,
Carmona-Vicente,N., Gozalbo-Rovira,R., Rodriguez-Diaz,J. and
Buesa,J.
TITLE Wide Diversity of Recombinant Noroviruses Circulating in Spain,
2016 to 2020
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7726)
AUTHORS Navarro-Lleo,N., Santiso-Bellon,C., Vila-Vicent,S.,
Carmona-Vicente,N., Gozalbo-Rovira,R., Rodriguez-Diaz,J. and
Buesa,J.
TITLE Direct Submission
JOURNAL Submitted (21-MAR-2022) Microbiology and Ecology, University of
Valencia, Av. Blasco Ibanyez 15, Valencia, Valencia 46010, Spain
COMMENT ##Assembly-Data-START##
Assembly Method :: SPAdes v. 3.11.1; MEGAHIT v. 1.2.4
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7726
/organism="Norovirus GI"
/mol_type="genomic RNA"
/isolate="3718VLC"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122928"
/country="Spain: Valencia"
/collection_date="07-Jun-2018"
/note="genotype: GI.3[P10]"
gene <1..5392
/gene="ORF1"
CDS <1..5392
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UNN26645.1"
/translation="ASNDAIAVADVSNNKANTNNENIGSRLMARLRGHIGPQRGEITT
KIKDANMALDLLRRSQTPSPTRHNHPPKDQRDRPPRTVMEVKRTMGWDDEPEQKESTA
RAWCDLTKEEKEEIMRNNERLFDAGGVTPSTVPSTFERDNSNGAVDEHQSVSWSAANG
VDIGVGDLTTVRGPYWNLCPLPPLDARNNGPAQEPIIGDMIEFYEGHIFHYAIYIGQG
KTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPTSQQRLTYDQLKELENEPWPYASITN
NCYEFCCRVMALDDTWLQRKLVTTGKFNHPTQEWSQDTPDFHQDSKLEMVRDAVLSAI
NGLVSQPFKNILSKIKPLNLISLLSNCDWTFMGVVELIVLMAELFDVFWTPPDISSFI
ASLLPEFHLQGPEDLAKDLVPLILGGIGLAIGFTRDKVTKVMKSAVDGLRSATQLGQY
GLEIFSIIKKYFFGGDQTERTLRGIEDAVIDMEVLSSTNVTQLVRDKKLAKAYMNVLD
NEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRIRPVVIMMCGPP
GIGKTKAAEHLASRLANEIRPGGKVGLVPRESIDHWDGYHGEEVLLWDDYGMSKITED
CNKLQAIADTAPLSLNCDRIENKGMQFVSDAIIITTNAPGPAPVDFVNLGPVCRRVDF
LVYCSAPEIEQMRRSHPGDANVIKDLYKKDFSHLKMEIAPQGGFDNQGNTPFGKGTMK
TTTLNRLLIQATALTMERQDEFQLQGAVYNFDEDRVAAFTSMARANGLGLISMATLGK
RLRSVKTMEGLRNALVGYKIEECDIIWNTRTYSIKSDGKAVTVKEKQSPSSAQHQAVC
TATLALSRLRAARALAYASCLQSAVMSVLQVAGSAVVVSRAVKRMFGTRADQPTLEGG
HKEHNCRVHRAEAAGRGPIGHDGVIERYGLCESEQEGEDEQTLELPTASNEGKNKGKT
KKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAEVQA
GGDGGIGETEAEIRHRVFYKSKTGMRKQRQEERRQLGLVSGSEIRKRKPIDWTPPKND
WSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGSKEVFG
EDLKNVAIHRVGEFTQFRFSKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLPLAV
RMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVCGVH
AAATKSGNTVVCAIQGGEGEATLEGGGQNKGHYAGHPILRYGNGPSLSTKTKFWKSTP
QPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVETVT
NAIEQAMDTPVAWSFSDACMSLDKTTSSGHPYHKRKNDDWNGTAFVRELGDQAAHANN
MFELGKSMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCEAIK
PHVIKLPIKVGMNAIEDGPLIYAEHAKYKYHFDADYTAWDSTQNREIMMESFNIMCKL
TANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWILTLCALSE
VTGLSPDVLQSQSYFSFYGDDEIVSTDVEFDPIKLTQVLREYGLKPTRPDKTDGPIVV
KQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHDDPFETLVPHPQRKVQ
LISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSMWTGDR
DLLPDYVNDDGV"
mat_peptide <1..1207
/gene="ORF1"
/product="p48"
mat_peptide 1208..2296
/gene="ORF1"
/product="NTPase"
mat_peptide 2297..2896
/gene="ORF1"
/product="p22"
mat_peptide 2897..3316
/gene="ORF1"
/product="VPg"
mat_peptide 3317..3859
/gene="ORF1"
/product="Pro"
mat_peptide 3860..5389
/gene="ORF1"
/product="RdRp"
gene 5376..7004
/gene="ORF2"
CDS 5376..7004
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UNN26646.1"
/translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPIAMDPVVGAATAVA
TAGQVNMIDPWIMSNFVQAPQGEFTISPNNTPGDILFDLQLGPQLNPFLSHLAQMYNG
WVGNMRVKILLAGNAFTAGKIIISCIPPGFTSQSVSIAQMTMFPHIIADVRVLEPIEI
PLEDVRNVLFHTNDNRPTMRLVCMLYTPLRANGSSSGTDPFVIAGRVLTCPDSTFNFL
FLVPPNVEQKTKQFSVPNLPLNSLSNSRVPSLIKSMMISRDQAQVIQFQNGRVTLDGQ
LQGTTPTSASQLFKLRGTVFTASGGKGLNLTELDGTPYHAFESPAPIGFPDIGDCDWH
LIAIPTTTFPNDGHNREIAVTQGSAFAPHLGSIHFTGGDLNNNDNVICSINWISPIDA
VKKVNPWVIPNYGSTLTEAAQLAPPIYPPGFGETIVFFMSDGPIANGLNGLSVPCTLP
QEFVTHFVNEQAPTRGEAALLHYIDPDTHRNLGEFKIYPEGFMTCVPNASGSGPQTLP
INGVFTFVSWVSRFYQLKPVGTAGAVRRLGIRRS"
gene 7004..7645
/gene="ORF3"
CDS 7004..7645
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UNN26647.1"
/translation="MAQAILGAIAATAAGSAVGAGIQAGTEAALQHQRFQQDLTLQNN
TFKHDKEMLGLQVEASTALLQNSLGTRYSMLTNAGLTSADAARAVAGAPVTRVVDWNG
TRIAAPTSTQTTLRSGGFMSVPIVYRGKQQQPSGGFHNPNYDAQSTSTRTSQWVSSQS
SSLSTLSPYHPNALRTAWVTPPGSTSTSTLSSNSTITRFFNTERLPLFANMRR"
ORIGIN
1 ggcgtctaac gacgctattg ccgttgctga tgtcagcaat aacaaagcta acaccaacaa
61 tgaaaacatt gggtctcgcc tcatggcgag actccgtggg catataggcc cacaacgtgg
121 cgaaatcacc acgaaaatca aagatgctaa tatggcattg gacttgttac gccggtcaca
181 aacaccctct cccacccggc acaaccaccc ccccaaagac caaagagacc gcccaccacg
241 gactgttatg gaggtgaaaa gaactatggg ttgggatgat gaaccagaac aaaaggagag
301 cacagccagg gcatggtgcg acctcacaaa agaagagaag gaagagataa tgcgtaacaa
361 cgaaaggttg tttgatgctg ggggggtaac cccttcaacc gtgcccagca catttgagag
421 agacaactcg aatggggccg ttgatgaaca ccagtctgta tcctggtctg ctgccaatgg
481 agttgatatt ggggttggag acctaacaac cgtccgcggg ccatactgga atctatgtcc
541 ccttccacca ctggatgccc gtaacaatgg ccccgcacag gagcctatca taggagacat
601 gatagagttc tatgaggggc atatctttca ctatgcaatt tacattgggc aaggtaaaac
661 catcggagtc cattcaccgc aagctgcttt ctctataccc aggataacca tccacccatt
721 ggtagcgtgg tggcgcgtgt gttacgtccc cactagccaa caacgcctca cctatgatca
781 gctcaaagaa ttggaaaatg agccatggcc ctacgcctcc ataaccaaca actgctatga
841 gttttgttgt agggtgatgg cacttgatga tacgtggctc cagagaaaat tagtcaccac
901 tggaaaattc aaccacccca cacaggaatg gtcacaagac acccctgact tccaccaaga
961 ttcaaaactt gaaatggtca gggatgctgt attgtcagcg attaatggcc ttgtgtctca
1021 gcccttcaaa aacatcctat caaagattaa gcccttaaac cttattagtc tcctttctaa
1081 ctgtgactgg acctttatgg gggtcgttga gttgatcgtg ctgatggctg aattgtttga
1141 tgtgttctgg acaccacctg acatatcaag ctttatagct tcactactac cagaattcca
1201 cctacaaggc ccagaggatt tggctaaaga tctggtcccc cttatacttg gtggcattgg
1261 cctggcaata ggctttacaa gggataaggt cacaaaggtt atgaaaagcg cggttgacgg
1321 gctacgctca gccacgcaac ttgggcagta tggcttggag atattttcaa tcataaagaa
1381 atatttcttt ggaggtgacc agacagagcg aacattgcgg ggtatcgagg atgcagtcat
1441 agatatggaa gtgttgtcca gtacgaatgt gacgcaattg gttagggaca agaaactagc
1501 caaggcttac atgaatgtgt tggacaatga agaagaaaaa gccaggaaac tgtcagtccg
1561 aagtgctgac ccgcatatag tgacctctgt taataacttg atatctcgaa tctctatggc
1621 aaggtcagca ttagccaaag cccaggcaga aatgacatct cgtattcgcc ctgtggtcat
1681 aatgatgtgt ggtcctcctg gtattggaaa aacaaaggct gccgagcacc tagccagccg
1741 attggcaaat gagataaggc caggtggtaa ggtcggcctt gtgccgcgtg agtccattga
1801 tcactgggac ggttatcatg gtgaggaggt cctactttgg gatgactatg gcatgtcaaa
1861 aattactgaa gattgtaaca aattacaagc aattgcggat accgcaccac tttccctcaa
1921 ttgtgacaga attgagaaca aaggcatgca atttgtatca gatgcaatta ttataaccac
1981 caatgcgcct ggcccggctc cagttgattt tgtaaatctt gggccagtgt gtaggcgagt
2041 agacttcctg gtctactgtt ccgccccaga aattgaacag atgcgaaggt cacatccagg
2101 tgacgccaat gtgatcaagg atttgtataa gaaggatttc tcacatttga agatggaaat
2161 agccccccaa ggaggctttg ataaccaagg caacacacca tttggaaagg gcactatgaa
2221 aaccaccaca cttaatagac tactcataca ggccacggcc ctgaccatgg aacgacaaga
2281 tgagttccag ttacaaggag cagtctacaa ctttgatgag gatagagtgg ccgcctttac
2341 cagcatggcc cgagccaacg gcctagggct tatcagtatg gccaccttgg ggaagagatt
2401 aagaagtgtc aagaccatgg agggattgcg caatgcattg gtaggctata aaattgaaga
2461 gtgtgatata atctggaaca cccgaaccta ctcaattaag agcgatggta aagctgtcac
2521 agtgaaagag aaacaaagcc catcatcagc tcagcatcaa gccgtctgca cggccactct
2581 cgctctatcc agactgcgtg cggcccgagc attggcctat gcctcttgcc ttcagagtgc
2641 agttatgtcc gtgctccaag tggccggctc tgctgtggtg gtgagtaggg cagtcaagcg
2701 tatgttcggt acgcgtgcag accaaccaac ccttgaaggt ggacataagg aacacaactg
2761 cagggtccat cgtgcagagg ctgcaggtcg tggccccata ggacacgacg gtgtcattga
2821 acgctatggc ctgtgcgaga gtgaacaaga aggagaagat gaacaaacat tggagctgcc
2881 aactgctagc aatgagggca agaacaaggg taagactaag aagggccgag gtcgcaagtc
2941 caacttcaat gccttttcaa gacgcggcct cagtgatgaa gagtatgaag aatacaagaa
3001 gatcagagag gaaaagagtg gcaattacag tatccaagag tacctcgagg accgccagcg
3061 ttatgaagaa gaactagcag aggttcaggc tggtggcgat ggcggaatag gtgagactga
3121 agcagaaatc cgccacaggg tgttctacaa gtccaagact ggcatgagaa agcaacgcca
3181 agaagaacgg cggcagttag ggctagtcag cgggtctgag attcgcaagc gcaagcccat
3241 agactggact ccacccaaga atgactggtc tgaagataca aggacagtca attatgatga
3301 acacatcagt tttgaggccc caccatcaat atggagtaga gttgtgaaat tcggcagtgg
3361 atggggtttt tgggttagtt caacagtttt tattaccacc actcatgtta tcccaccagg
3421 ctccaaagaa gtttttggag aggatcttaa aaatgtggcc attcacaggg ttggtgaatt
3481 cacccagttc cgcttttcca aaaagatgag acctgatctt agtggtatgg tgctggagga
3541 aggttgccca gagggcacag tttgtaccat aatgatcaag agagactctg gtgaattatt
3601 accactggct gtgcgcatgg gcgcggtggc ctcaatgaaa atccaaggga aacttatgca
3661 tggacagtca gggatgctcc tcaccggggc caatgccaaa ggcatggacc ttgggactat
3721 acccggagac tgtggggcgc cctatgtgca caagaggggc aatgattggg tcgtttgtgg
3781 cgtacatgcc gcagccacaa agtcaggcaa caccgtggta tgtgctatac aaggtggaga
3841 aggtgaggct acactagaag gtggtggcca aaacaagggc cattatgcag ggcaccccat
3901 actcagatat ggtaatgggc cctcactgtc aaccaaaacc aaattctgga aatctactcc
3961 acaaccactt ccccctggga catacgagcc ggcctaccta ggtggaaggg acccaagggt
4021 ggaaggaggt ccgtcactac aacaagttct gagagaccaa cttaagccct ttgccgagcc
4081 tcgcggtagg ttgcctgaag caggcctctt ggaagccgca gtcgaaacgg ttaccaatgc
4141 cattgagcaa gccatggaca caccggtggc ttggagcttc agtgatgcat gtatgtccct
4201 tgacaagacc actagttctg gccaccccta ccataagaga aagaatgacg actggaatgg
4261 caccgcattc gttcgggagc taggagatca agcagcccat gccaataaca tgtttgaact
4321 tggaaaatcc atgaaacctg tatacactgc agcactcaaa gatgaacttg ttaaaccaga
4381 taaggtgtac aacaagatca agaagagact attgtggggg gcggaccttg gtacagtcat
4441 ccgtgccgct agagcttttg gtccattttg tgaagccata aaaccacatg tcataaagtt
4501 gcctattaaa gttggcatga atgccattga agatggtccc ctaatttatg cagagcatgc
4561 caaatacaag taccattttg atgctgatta tacggcctgg gattccaccc aaaacaggga
4621 aattatgatg gaatctttca acatcatgtg caagctcacc gccaatccct ccctagccgc
4681 agtagtggca caagatttgc tttctccttc tgaaatggat gttggggatt atgtgatcag
4741 tgtgaaagac ggtttgccat caggctttcc atgcacctca caagtcaaca gcataaatca
4801 ctggatcctc accctgtgtg cattatcaga agtcactggc ctctccccag acgtgttgca
4861 gtcacaatcg tacttctcat tctatgggga tgacgagata gtctctacag atgttgaatt
4921 tgacccaatc aagctaacac aagtgctcag agaatatggt ctaaaaccta caaggcctga
4981 caaaacagat ggtcctatag tggttaagca gcaagtagat ggtcttgtct ttcttcgacg
5041 cactatctca aaagatgcca ttggttacca aggtcgtctc gaccggaatt ccattgagag
5101 gcagctttgg tggacacgtg gtcctaacca cgatgaccca tttgagacac tggtcccaca
5161 cccacagagg aaggtccaac taatatccct gcttggtgag gctgccctcc atggagagaa
5221 attctacagg aaaatagcaa gtagagtcat ccaggaagtt aaagaagggg ggttagaaat
5281 ttacattcct ggttggcagg ccatgttccg ctggatgcgc ttccatgatc tgagcatgtg
5341 gacaggggat cgcgatctcc tgcccgatta tgtaaatgat gatggcgtct aaggacgccc
5401 caacaaacat ggatggcact agtggtgccg gccagctggt accagaggca aatacagctg
5461 agcctattgc tatggaccca gtagttggtg ctgccacggc agttgccact gctggccaag
5521 taaatatgat tgacccctgg attatgagca attttgttca agcacctcaa ggagagttta
5581 caatttcacc taataataca cctggtgata tattgtttga tctacaattg ggaccccaat
5641 taaacccctt tctatctcat ttggcacaaa tgtacaatgg ctgggttgga aacatgagag
5701 taaagatttt gctggctggg aatgcgttca cagcgggtaa aataatcatt agttgcattc
5761 ctcctggttt tacctcccaa agtgtgtcta tagcacagat gactatgttc cctcatataa
5821 tcgctgatgt cagggtgtta gaaccaattg aaattcccct ggaggacgtg cggaacgtcc
5881 tgttccatac caatgacaat cggccaacta tgcggctggt atgcatgctt tatacaccac
5941 tcagggccaa tggcagttct tcaggcactg atccttttgt cattgcaggc agggtcttga
6001 cttgccccga ttccaccttc aactttctgt tcttggtacc cccaaatgtg gagcagaaaa
6061 ctaaacagtt tagtgtgcct aatctccctc tcaattctct ttctaattct agggtgccta
6121 gcctgatcaa gtctatgatg atttctcgtg accaagctca agtaattcaa tttcagaatg
6181 gtcgggttac attagatggt caattacagg gtacaacccc gacttctgct agccaactct
6241 ttaagcttcg gggcactgtt ttcactgctt ctggcggtaa gggactaaat ttaacggagc
6301 tcgacggcac accctaccat gcctttgaga gtcccgcacc catagggttc cctgatattg
6361 gtgattgtga ttggcatctc atcgctatcc ccactaccac ttttccaaat gatggccata
6421 atcgtgagat agcagttact caagggtcag catttgcacc ccacctaggt tctatacatt
6481 tcactggagg tgacctcaac aataatgata atgttatctg ttcaataaat tggatctccc
6541 ccattgatgc agtgaaaaag gtaaacccat gggtcattcc aaactatggt tcaaccctaa
6601 cagaagcagc ccaattggct cccccaatat accccccggg ttttggtgag accattgttt
6661 tctttatgtc tgatggcccc attgccaatg ggctgaatgg actgagtgtc ccatgcacgc
6721 tcccgcaaga atttgtgacc cattttgtca atgaacaagc tccaacccgg ggtgaagctg
6781 cattgttgca ctacattgac ccagatactc atcgcaactt aggtgagttc aaaatctacc
6841 ctgaaggatt tatgacttgt gtgcctaatg ctagtgggag tggtccccaa actttaccaa
6901 tcaatggtgt cttcactttt gtttcttggg tttctcgctt ctatcaatta aagcctgtgg
6961 gaacggccgg tgcggtccgt aggctcggaa tccgcagatc ataatggccc aagccatctt
7021 gggagcaatt gcggccacgg ctgcaggcag tgctgttggc gcaggcatcc aggctggtac
7081 ggaggccgcg ctacagcatc agcgtttcca acaggactta actcttcaaa ataatacctt
7141 taagcatgac aaggaaatgt tagggctaca ggttgaagct tcaacagctc tcttgcagaa
7201 tagcttagga acccgctaca gcatgctcac caatgctggt ctcacctcag ctgacgctgc
7261 cagagctgtt gccggggctc cggtaacccg ggtggttgac tggaatggca cgcgcattgc
7321 agcccccaca tcaacccaga ccactcttag gtcaggtggc ttcatgagtg tgccaatagt
7381 gtacagaggg aaacaacagc agccttctgg tggctttcac aaccccaact acgacgcgca
7441 gtctacatct actcgcacgt ctcagtgggt gtcttcacag tcctcttctt tgtcaactct
7501 ttcaccatac catcctaatg ctctccgaac cgcttgggtc accccccccg gttcgacatc
7561 tacgtctaca ctttcttcaa attctactat tactagattc tttaatactg aaaggttacc
7621 tctattcgca aatatgagga gatagttttg taatatgaaa tgtgggcatc atattcaatt
7681 ggcttaatta ataattaatg atttggtcta attagtattt gatgtt
//