Typing tool
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Typing tool
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Complete norovirus genomes
| OM884056 | GII.3 | |
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| GII.P12 |
ORF1: 1..5090
ORF2: 5071..6717
ORF3: 6717..7481
LOCUS OM884056 7526 bp RNA linear VRL 11-JUL-2022
DEFINITION Norovirus GII isolate 43587 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM884056
VERSION OM884056.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7526)
AUTHORS Jacqueline,C., del Valle Arrojo,M., Bellver Moreira,P., Rodriguez
Feijoo,M.A., Cabrerizo,M. and Fernandez Garcia,M.D.
TITLE Norovirus GII.3[P12] outbreak associated with the drinking-water
supply in a rural area in Galicia, Spain, 2021
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7526)
AUTHORS Fernandez Garcia,M.
TITLE Direct Submission
JOURNAL Submitted (02-MAR-2022) ENTEROVIRUS AND VIRAL GASTROENTERITIS,
INSTITUTO DE SALUD CARLOS III, Ctra. Majadahonda-Pozuelo, Km 2,
MAJADAHONDA, MADRID 28220, Spain
COMMENT ##Assembly-Data-START##
Assembly Method :: Metaspades v. v3.14.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7526
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="43587"
/isolation_source="stool"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="Spain"
/collection_date="01-Oct-2021"
/note="genotype: GII.3[P12]"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UMG81045.1"
/translation="SNDASAAAAANSNNDNAKSSSDGVLSSMAVTFKRALGARQKQPP
PREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVCQPDETNT
AFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCR
RMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGRVRPL
NILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGNYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENRYGLLDTMRVGKQLKDVKTMSELK
QALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNTTVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQ
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRP
PKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKIKKRLLWGSDLATMI
RCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..980
/gene="ORF1"
/product="p48"
mat_peptide 981..2078
/gene="ORF1"
/product="NTPase"
mat_peptide 2079..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6717
/gene="ORF2"
CDS 5071..6717
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UMG81046.1"
/translation="MKMASNDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6717..7481
/gene="ORF3"
CDS 6717..7481
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UMG81047.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTMPNFKMNQAPRSTPSSGSSVRSLSTQNTSLSS
HSSGLSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSAASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgctg ctaatagcaa caacgacaac gcaaaatctt
61 caagtgacgg agtgctgtct agcatggctg tcacttttaa acgagccctc ggggcgcggc
121 aaaaacagcc tcccccgagg gaaataccac aaaggcctcc acggccaccc accccagaac
181 tggtcaaaaa gatccctcct cccccaccca atggggagga tgaactagtg gtctcttata
241 gcgccaaaga tggcgtttct ggtttacctg aacttaccac tgtctgtcaa ccggatgaga
301 ccaacacggc gttcagtgtt ccccctctca accagaggga aaacagggac gccaaggagc
361 cgctgaccgg aactatcctg gaaatgtggg acggggagat ctatcattat ggtctgtatg
421 tggagcgagg ccttgtactc ggtgtgcaca aaccaccagc tgccatcagt ctcgccaagg
481 ttgaactagc accactctct ctgttttgga ggccagtgta cacaccacag tatctcatct
541 ctccagacac tcttaggaga ctgcatggag agtcgttccc ctacacagcc tttgataaca
601 actgctatgc cttctgttgt tgggttctgg acctaaacga ctcgtggttg tgcaggagaa
661 tgatccagag aacaactggc tttttcagac cttaccaaga atggaacagg aaacccctcc
721 ccactatgga tgactctaaa ttgaagaagg tagccaacat attcttgtgt gcgctatctt
781 cgctattcac taggcccatc aaagacataa taggaagagt gagaccgctc aacatcctta
841 acatcctggc ctcatgtgat tggacttttg caggtatagt ggaatcttta atcctcttgg
901 cagagctctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttac
961 taggtaacta cgaactgcag gggcctgagg accttgcagt agaactcgta ccagtagtga
1021 tgggagggat tggtttggtg ttaggattca ccaaagagaa gatcggaaaa atgttgtcgt
1081 ccgctgcttc caccttaaga gcttgtaaag acctcggtgc atacgggctg gaaatcctaa
1141 aattggtcat gaaatggttc ttcccaaaga aagaggaagc aaatgagcta gctatggtga
1201 ggtccatcga ggatgcggta ctggacctcg aagcaattga gaacaaccac atgactgccc
1261 tcctcaaaga caaagacagc ttggcaacct acatgaggac ccttgacctc gaggaggaga
1321 aagccaggaa gctttcaacc aagtctgctt cacctgacat cgtgggcacg attaacgctc
1381 tcctggcgag aatcgccgct gcacgttccc tggtgcatcg ggcgaaagag gaactctcca
1441 gcagaccaag acctgttgtc gttatgatat caggtaggcc agggataggg aaaactcacc
1501 ttgccaggga gctggccaag aagatcgcag cttcactcac aggggaccag cgcgtgggtc
1561 tcatccctcg taatggcgtt gaccactggg acgcatataa gggagaaaga gtcgtcctat
1621 gggacgatta tgggatgagc aatcccatcc acgatgccct caggttacag gaacttgctg
1681 acacctgccc ccttacgcta aactgtgaca ggattgagaa caaaggaaag gtctttgata
1741 gcgatgccat aatcatcacc actaatctag ccaacccagc accattggac tatgtcaact
1801 ttgaagcatg ctcgaggcgc attgacttcc tcgtgtacgc agaagcccct gaggtcgaga
1861 aagcaaagcg tgatttccca ggtcaacctg atatgtggaa gaacgcattt agctctgact
1921 tctcgcacat aaaactggcg ctggctccgc agggtggctt cgacaagaac ggaaacaccc
1981 cacacgggaa aggcgtcatg aaaaccctca ccactggttc cctcatcgcc cgagcatcag
2041 ggctactcca tgagaggttg gatgagtacg agctgcaggg cccaaccccc accaccttta
2101 attttgaccg caacaaggtg cttgcgttca gacaacttgc tgccgaaaac aggtatggat
2161 tgttggacac aatgagagtt ggaaaacagc tcaaggatgt taagaccatg tcagagctca
2221 aacaagcact caagaatgtc gcaatcaaga gttgccagat agtgtatggt ggctgcacct
2281 acaggcttga gtctgatggc aagggtgatg taaaagttga cagagttcag aacaccactg
2341 tacagaccaa caatgagctt gccggcgcac tacaccatct taggtgtgcc aggatcaggt
2401 attatgtcaa atgtgttcag gaggccctgt attccattat ccaaatcgct ggggctgcat
2461 ttgttaccac gcgcattgtc aagcgcatga acatacaaga tctctggtcc aagccacagg
2521 tggaggacac agaggaaatc gctagcaagg atgggtgccc aaaaccccag gatgatgaag
2581 agtttgtcgt ctcatccgat gatatcaaaa ccgagggcaa gaaagggaag aacaagtctg
2641 gccgtggcaa gaagcacaca gcgttttcaa gtaaaggtct cagtgatgaa gagtacgatg
2701 agtacaaaag aatcagagaa gaaagaaatg gcaaatactc catagaggaa tacctccagg
2761 acagagacag gtattatgag gaggtggcca tcgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaagatc cgacagagga tcttcaggcc aacaaggaaa caacgcaaag
2881 aggagagagc ctctctcggt ttggtcacag gttctgaaat caggaagagg aacccagatg
2941 acttcaagcc taaaggaaag ctgtgggctg atgatgacag gagtgttgac tacaatgaga
3001 aactcaactt tgaagcccca ccaagcatct ggtcgaggat agtcaacttt ggctcaggtt
3061 ggggcttttg ggtctcccct agcctgttca taacatcaac tcatgtcata ccccagggcg
3121 cacaggagtt ctttggtgta tccatcaaac aaatccagat acacaaatca ggtgaatttt
3181 gccgcttgag gtttccaaag ccgatcagaa ctgacgtgac aggcatgatc ttagaagaag
3241 gtgcacccga aggaaccgta gtcacattac tcatcaaaag accaactgga gagctcatgc
3301 ccctggcagc cagaatggga acccacgcaa ccatgaagat acaagggcgc actgttggag
3361 gtcaaatggg catgcttctg acaggatcca acgccaagag tatggacctg ggcaccacac
3421 caggtgactg tggctgcccc tacatttaca agagggggaa tgattacgtg gtcattgggg
3481 tccatacagc tgccgcccgc ggaggaaaca ctgtcatttg tgccacccag gggagcgagg
3541 gagaagccac acttgaaggc ggtgatagca aggggaccta ctgcggagca ccaatcttag
3601 gtccaggaag tgccccaaaa ctcagcacca agaccaaatt ctggagatca tccacggcac
3661 cactcccacc tggtacctat gaaccagctt acctcggtgg caaagacccc agagttaagg
3721 gtggcccttc attgcaacaa gttatgaggg atcaactgaa accattcact gagcctaggg
3781 gtaggccacc aaaaccaagt gtgctagaag ctgccaagaa aaccatcgtt aatgtcctag
3841 aacagacaat tgacccacct caaaaatggt cgtttgcgca ggcatgcgca tccctagaca
3901 agaccacctc tagcggccat ccgcaccaca tgcggaagaa tgactgctgg aacggggagt
3961 ccttcacagg aaaactggca gaccaggctt ccaaggccaa tctgatgttt gaggagggaa
4021 agaacatgac cccagtctac acgggtgcgc ttaaggacga gctggtcaag actgacaaag
4081 tttatggtaa gatcaaaaag aggcttctct ggggttcgga cctggcgacc atgattcggt
4141 gcgctcgagc atttgggggt ctaatggagg aactcaaagc acattgtgtc acactacctg
4201 ttagggtagg tatgaatatg aatgaggatg gccctatcat ttttgagaga cactccagat
4261 acaaatatca ttatgatgct gactactccc ggtgggactc aacacaacaa agagccgtgt
4321 tggcagcagc cttagaaatt atggtcaagt tttccccaga gccacaccta gcccaaaaag
4381 ttgcagagga ccttctttct cccagcgtga tggacgtggg tgatttcaaa atatcaatca
4441 atgagggtct cccctccgga gtgccctgca cctcccaatg gaattccatc gcccactggc
4501 tcctcactct ctgtgcactt tctgaggtaa caaacctgtc ccctgacatt attcaggcta
4561 attctctctt ttctttctac ggtgatgatg aaattgtgag cacagacata aaattggacc
4621 cagaaaaact gacagcaaaa ctcaaggaat acgggttgaa gccgacccgc cctgacaaaa
4681 ctgaagggcc tcttgtcatt tccgaagacc taaatggcct aaccttcctg cggaggaccg
4741 tgactcgcga cccagcaggc tggtttggaa agttggaaca gagctcaata cttagacaaa
4801 tgtactggac taggggcccc aaccatgaag atccatctga aacaatgata ccacactccc
4861 agaggcccat acaattgatg tctttgctgg gtgaggcagc actccacggc ccagcattct
4921 acagcaaaat cagtaaactg gtcattgcag agttgaagga aggtggcatg gatttttacg
4981 tgccaaggca agagccgatg ttcagatgga tgagattctc ggatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga cgccacccca
5101 tctaatgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat ggcgctagat
5161 ccagtggcgg gtgcagcgat agcagcaccc ctcaccggcc agcaaaatat aattgatccc
5221 tggattatga ataattttgt gcaagcacct ggtggtgagt tcacagtgtc tcctaggaat
5281 tcccctggtg aagtgctcct taatttggaa ttgggcccag aaataaaccc ctatctggcc
5341 catcttgcta gaatgtacaa tggttatgca ggtgggtttg aagtgcaggt agtcctggct
5401 ggaaatgcgt ttacagcagg aaagataatc tttgcagcta taccccctaa cttcccaatt
5461 gacaatctaa gtgcagcaca gatcacaatg tgtccacatg tgattgtgga tgtcaggcag
5521 ctggaaccag tcaacctccc gatgcctgac gttcgcaata acttcttcca ctacaaccaa
5581 gggtctgatt cgagattgcg cttggttgca atgctgtata cacctcttag ggcaaataac
5641 tctggggatg atgttttcac tgtgtcttgt agagtgctga ctagacctag tcctgaattt
5701 tcatttaact tccttgtgcc acccactgtg gagtcaaaga caaaaccttt taccctccca
5761 attctgacta tctctgaaat gtctaattct aggtttccag tgccgattga ttctctgcac
5821 accagcccaa ctgagaacat tgttgtccag tgtcaaaatg gacgcgtcac tcttgatggc
5881 gagttgatgg gcaccactca gctcctacct agtcaaatct gtgctttcag gggcgtgctc
5941 actaggtcaa caagcagggc tagcgaccag gccgacacag caacccctag attgtttaat
6001 tattattggc acatacaatt ggataatcta aatggaactc cttatgatcc tgcagaagac
6061 ataccaggcc ccctagggac accagatttt cggggtaaag tctttggcgt ggccagccaa
6121 agaaaccccg atagtacaac tagagcacat gaagcaaagg tggatacaac agctggtcgc
6181 ttcaccccaa aactaggttc attagagata tccactgaat ctggtgactt tgaccaaaac
6241 caaccaacaa gattcacccc agttggcatt ggggttgacc atgagtcaga cttccagcaa
6301 tggtccttac ctgattactc tggtcagttc actcacaaca tgaacttagc cccagctgtt
6361 gctcccaact tccctggtga gcagctcctt ttcttccgct cacagttgcc atcttctggt
6421 gggcgatcca atgggattct agattgcctg gtcccccaag aatgggtcca gcacttctac
6481 caagaatcag cccccgccca aacccaggtg gctctggtta gatatgtcaa ccctgacact
6541 ggtagagtgt tgtttgaggc caagctgcac aaattgggtt tcatgactat agctaagaat
6601 ggtgactctc caataactgt ccctccaaat ggatatttta ggtttgaatc ttgggtgaac
6661 ccattttaca cacttgcccc catgggaact gggaatgggc gtagaagagt tcaataatgg
6721 ctggtgcttt tatagcagga ttagctggtg atatattcac aaacactgtg gggtctctag
6781 ttaatgcagg ggctaatgct atcaatcaaa aagttgattt tgaaaataat aaatatttgc
6841 aaaatgcttc cttcaatcat gataaggaaa tgttaaatgc acaaattgag gcgacaaaga
6901 gattacaggc tgatatgatt gccatcaaac agggggtttt gaccgctggc ggcttttccc
6961 ccactgatgc agctcgcggg gcaatcaacg cccccatgac aaaagtccta gattggaatg
7021 gaacaaggta ctgggcacca agcgccacct ctacaacctc gatgtcgggt ggcttcacaa
7081 accaggctgt gcacaggacg atgccaaatt ttaaaatgaa ccaggccccc agatccacac
7141 ccagcagtgg gtcttcagtg aggtcactct caacccaaaa cactagcctg agctcacact
7201 cgtccggatt gtctcgatcc agcgggtcta cagttgctag ctcactacca tcctccaaca
7261 ggactaggga ctgggtcaat cagcaaaatt tcaacttgga accacacatg cctgggtcac
7321 ttaggacggc ttttgtcact ccaccatcta gtgcagcctc tagttcaggc actgtctcaa
7381 ccgtgcccaa aaatgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
7441 tattcgcaca ccttcgtaga aggggggagt caaatgttta gtgaaaaggt tatcttaaat
7501 ttgatttaaa ttgaatttga tttgga
//