Typing tool
|
Complete norovirus genomes
OM480530 | GII.17 | ||
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GII.P17 |
ORF1: 1..5050 ORF2: 5031..6653 ORF3: 6653..7432LOCUS OM480530 7484 bp RNA linear VRL 01-MAR-2022 DEFINITION Norwalk virus strain HuN-FA1 nonstructural polyprotein gene, partial cds; and VP1 and capsid protein VP2 genes, complete cds. ACCESSION OM480530 VERSION OM480530.1 KEYWORDS . SOURCE Norwalk virus ORGANISM Norwalk virus Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus. REFERENCE 1 (bases 1 to 7484) AUTHORS He,W.-T., Hou,X. and Zhao,J. TITLE Direct Submission JOURNAL Submitted (01-FEB-2022) College of Veterinary Medicine, Nanjing Agricultural University, No. 1 Weigang, Xiaolingwei District, Nanjing, Jiangsu 210095, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7484 /organism="Norwalk virus" /mol_type="genomic RNA" /strain="HuN-FA1" /host="Masked palm civet" /db_xref="taxon:11983" /country="China" /collection_date="2020" CDS <1..5050 /codon_start=2 /product="nonstructural polyprotein" /protein_id="ULR75169.1" /translation="KEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPPT PELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREVG EAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVVY TPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKPY QDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWTF AGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVL GFTKEKIGKMLSSAATTLRACRDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDA VLDLEAIENNHMTTLLKDKDSLATYIRTLDLEEEKARKLSTKSASPDIVGTINALLAR IAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLV PRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFD SDAIIVTTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHFK PDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERKDEFELQGSD LPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQI VYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGVLHHLRSARIRYYVKCFQEAIYS LLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDIK VEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKG KLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPEGITEA FGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSVLIKRTTGELMPL AVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIG VHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSS NAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTI INVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKAN LMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEF KANCITLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVR FSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALS EVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLV ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTRGPNHEDPSETMIPHAQRPV QLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGD RNLAPSFVNEDGVE" CDS 5031..6653 /codon_start=1 /product="VP1" /protein_id="ULR75170.1" /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ" CDS 6653..7432 /codon_start=1 /product="capsid protein VP2" /protein_id="ULR75171.1" /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISQVTPPSSR ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRF" ORIGIN 1 caaggaaaaa tcttcaagtg acagcctgtt tgctaacatg tctgttactt ttaagaaagc 61 cctcggggcg cggtctaaac aaccgccccc gggagaaaca aaacaaatac aaaaaccacc 121 aaggccaccg acaccggaat tggtgaagag aatacctcca cccccaccca atggcgagga 181 tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct gggctgcccg acctaacaac 241 tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt cccccactta gccagagaga 301 agtcggcgaa gctaaagaac cgcttcctgg ctccattctg gaaatgtggg atggtgagat 361 ctaccactat gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca aaccacctgc 421 tgcaataagc cttgccaaaa ttgaaataac accgctgtct ctctactgga gagtggtcta 481 cactccccag tatttgatag atcctggaac tcttaagaac ttgagtggag agactttccc 541 atacacggcc tttgacaaca actgttatgc cttctgttgt tgggtcctag acctcaacga 601 ctcctggctt agcaggagaa tgatccaaag aacaactgga ttcttcaaac cttatcagga 661 ttggaacaga aaacccttac caaccatgga tgaaccgaaa atcaagaagg ccgcgaatgc 721 tgtcctatgc gctctctcct cactcttcac tagacccatt aaggacatca ttggaaagct 781 tagaccactg aacattctta atatactggc aacctgcgat tggacttttg caggcatagt 841 ggaatccttg atccttcttg ctgaactctt tggggtgttc tggacacccc cagatgtgtc 901 tgcgatgatt gctcccttac tcggtgacta cgagatgcaa ggccccgaag acctggccgt 961 ggaacttgtg cccgtggtga tgggaggaat aggtttggtg ttaggattca ccaaagaaaa 1021 gatcggcaag atgctttcat cggctgcgac cacacttagg gcctgcaggg atctaggatc 1081 ttatggattg gagatactca aattggtcat gaagtggttc ttccccaaga aggaggaggc 1141 taacgaacta gccatggtga gggccattga ggatgcagtc ctggatttgg aggcaataga 1201 aaacaatcac atgaccaccc ttctcaagga taaagacagc ctggccacat acattaggac 1261 tcttgacttg gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt cacctgacat 1321 cgtgggtaca ataaacgcat tattggctag gatagcagcc gccaggtcac tggtccacaa 1381 ggctaaggag gagctctcga gcagacagag acctgttgtt gtaatgatat caggtagacc 1441 aggtatagga aagacccatc tggccagaga gctagccaag aaagttgcgt caacactgtc 1501 aggcgaccaa aggattggac tggtacctag aaatggcgtc gaccattggg acgcctacaa 1561 gggagaaagg gtggttctgt gggatgatta tggtatgagc aaccctatac aggacgcact 1621 gaggctccaa gaattggctg acacctgtcc tctgacccta aattgtgata ggattgaaaa 1681 caaaggaaaa gtgttcgaca gtgatgccat aattgtaaca accaaccttg caaacccagc 1741 accactagac tatgtcaact ttgaggcctg ctctagacgc atagacttct tggtgtatgc 1801 agacgcacct gacattgaga aggctaagcg tgacttccct ggccaaccag atatgtggaa 1861 agaccatttc aagccagact tctcacacat taaacttcag ctggcaccac agggaggttt 1921 tgacaaaaat ggcaacaccc cacatggtaa aggtgtggtg aagtccctga cgattggttc 1981 tctgatcgcc agggcctccg gcttgctcca cgagagaaag gatgaattcg agctccaagg 2041 ctctgacctg ccaaccttca attttgaccg caacaaagtc gccgccttca gacaattagc 2101 agctgaaaac aaatatggtc ttatggacac actgagggtc ggcaaccaac tgaaaagtgt 2161 taagaccttg gatgagctga agcaggccat aaagaacatc agtatcaaga agtgtcagat 2221 agtgtataat ggatgcacct ataccatgga atctgatggg aggggcaagg ttgtggttga 2281 aaaggtgcaa aacgcaacag ttcaaaccaa caatgaactt gtaggggtgc tccaccacct 2341 gagatctgca aggataagat actatgttaa atgtttccaa gaagccattt actctctact 2401 ccaaattgct ggtgcagcct tcgtcacctc acgcatcgtg aggcgcatga acatatcaaa 2461 cctctggtcg aagccaccca tcgaggaggg tgatgagcct gaagacagag gaggatgccc 2521 caagcccagg gatgaagatg acctcactat tgactctaga gacattaaag tggaagggaa 2581 gaagggcaag aacaagtctg gccggggcaa gaaacacaca gccttctctt ccaagggcct 2641 cagtgatgaa gagtacgatg agtacaagag aatcagagag gagaggaatg gcaaatactc 2701 aatagaggag tacctccaag atagggacag atactatgaa gagcttgcca ttgctaaggc 2761 cactgaggag gacttctgtg aggaggagga gatcaaaatc cgccagagaa tcttccgacc 2821 caccaggaag cagcggaaag aggaaagggc cacgcttggg cttgtcacag gatcggaaat 2881 cagaaagagg aatccagatg actttaaacc aaagggaaaa ttgtgggctg atgacaacag 2941 gagcgtggat tacaatgaga ggatagattt tgaggctccc ccgagtgttt ggtctaggat 3001 agtcaacttt ggcacaggct ggggattctg ggtttctcca agtctcttta taacttcaac 3061 acacgtcata ccagaaggaa tcactgaggc ctttggagtg cccataaacc aaatccaaat 3121 tcacaaatct ggagaatttt gccgcttgcg gtttccaaag ccaattagac cagacgtgag 3181 tgggatgatc ttggaagagg gcgcccctga aggcactgtt gtgtctgttc tcatcaaaag 3241 gacaacaggg gagctgatgc ctcttgcagt cagaatgggg actcatgcca caatgaaaat 3301 ccaaggtaga acggtgggtg gtcagatggg tatgcttctc actggctcaa atgctaaaag 3361 catggatcta ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa 3421 tgaccttgtg gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg 3481 tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca agggtaccta 3541 ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt 3601 ctggagatcc tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg 3661 gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa 3721 accttttaca gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa 3781 gactatcatt aatgttctgg aacaaaccat tgaccctcct caaaagtggt catatgccca 3841 agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa 3901 tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa 3961 tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga 4021 gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctgt ggggttctga 4081 cctctccaca atgattcgat gcgccagagc atttggcggt ctcatggatg aattcaaagc 4141 aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg gtcccataat 4201 atttgagaga cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc 4261 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga 4321 gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg tcgatgtggg 4381 cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg 4441 gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg 4501 tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag 4561 cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa 4621 acccactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt 4681 gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca 4741 aagctccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga 4801 gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc 4861 cctacatgga ccctcatttt atagcaaggt tagcaaatta gtcatatctg aacttaaaga 4921 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc 4981 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg 5041 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca 5101 acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc 5161 aaaataacat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt 5221 tcacagtgtc acccagaaac tctcctggag aaattttatt aaacttagag ttgggccctg 5281 atttgaaccc ttatttggct catttgtcaa ggatgtataa tgggtatgct ggtggagtgg 5341 aagttcaggt tctcctggca gggaacgcgt tcactgccgg gaagatcctc ttcgccgccg 5401 tcccgccaaa tttcccagtg gaattcttaa gcccagccca gattacaatg ctcccacatt 5461 taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata 5521 cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata 5581 ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga 5641 ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa 5701 ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg aggttcccag 5761 tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg 5821 gcaggtgcac acttgatggt gagttacaag gcacaaccca gttgctccca tctggcatct 5881 gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac 5941 tgcaaaacct caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta 6001 cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg 6061 cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc 6121 ccaaattagg ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccagccga 6181 caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc agacaatggg 6241 aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc 6301 caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt 6361 acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac ttctatcagg 6421 aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac 6481 gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag 6541 actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt 6601 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg 6661 ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa 6721 cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc 6781 tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct 6841 gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac 6901 tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac 6961 tcgatactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc 7021 acctgtgcat atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct 7081 agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac 7141 atctggctct tctagtaatg cttcttctgc ctccacaaaa ttgacaaact taagttctgg 7201 ctcctctcaa aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat 7261 gagtggcgca cttaacatct cacaagtcac gccaccctca agtagggctt ccagttctgg 7321 gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca 7381 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacggtttt agtgaaaaga 7441 aataattggc tataatgtga tttctttcta aatttggcta attt //