Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM480530 | GII.17 | |
|
|---|---|---|---|
| GII.P17 |
ORF1: 1..5050
ORF2: 5031..6653
ORF3: 6653..7432
LOCUS OM480530 7484 bp RNA linear VRL 01-MAR-2022
DEFINITION Norwalk virus strain HuN-FA1 nonstructural polyprotein gene,
partial cds; and VP1 and capsid protein VP2 genes, complete cds.
ACCESSION OM480530
VERSION OM480530.1
KEYWORDS .
SOURCE Norwalk virus
ORGANISM Norwalk virus
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7484)
AUTHORS He,W.-T., Hou,X. and Zhao,J.
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2022) College of Veterinary Medicine, Nanjing
Agricultural University, No. 1 Weigang, Xiaolingwei District,
Nanjing, Jiangsu 210095, China
COMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7484
/organism="Norwalk virus"
/mol_type="genomic RNA"
/strain="HuN-FA1"
/host="Masked palm civet"
/db_xref="taxon:11983"
/geo_loc_name="China"
/collection_date="2020"
CDS <1..5050
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="ULR75169.1"
/translation="KEKSSSDSLFANMSVTFKKALGARSKQPPPGETKQIQKPPRPPT
PELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQPDAQNTAYSVPPLSQREVG
EAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAISLAKIEITPLSLYWRVVY
TPQYLIDPGTLKNLSGETFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFKPY
QDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIGKLRPLNILNILATCDWTF
AGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPEDLAVELVPVVMGGIGLVL
GFTKEKIGKMLSSAATTLRACRDLGSYGLEILKLVMKWFFPKKEEANELAMVRAIEDA
VLDLEAIENNHMTTLLKDKDSLATYIRTLDLEEEKARKLSTKSASPDIVGTINALLAR
IAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARELAKKVASTLSGDQRIGLV
PRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADTCPLTLNCDRIENKGKVFD
SDAIIVTTNLANPAPLDYVNFEACSRRIDFLVYADAPDIEKAKRDFPGQPDMWKDHFK
PDFSHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIARASGLLHERKDEFELQGSD
LPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKTLDELKQAIKNISIKKCQI
VYNGCTYTMESDGRGKVVVEKVQNATVQTNNELVGVLHHLRSARIRYYVKCFQEAIYS
LLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDRGGCPKPRDEDDLTIDSRDIK
VEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE
LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKG
KLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVSPSLFITSTHVIPEGITEA
FGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPEGTVVSVLIKRTTGELMPL
AVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDLVVIG
VHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGPGNAPKLSTKTKFWRSS
NAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPNPNVLESAKKTI
INVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDYWSGESFTGKLADQASKAN
LMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSDLSTMIRCARAFGGLMDEF
KANCITLPIRVGMNMNEDGPIIFERHSRYRYHYDADYSRWDSTQQRAVLEAALEIMVR
FSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPCTSQWNSIAHWLLTLCALS
EVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLV
ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQLYWTRGPNHEDPSETMIPHAQRPV
QLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQESMFRWMRFSDLSTWEGD
RNLAPSFVNEDGVE"
CDS 5031..6653
/codon_start=1
/product="VP1"
/protein_id="ULR75170.1"
/translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
VRNTFFHYSNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
QLLPSGICAFRGRVTAQINQRDRWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGM
VSQRNVGNDAPGSTRAQQAWVSTYSPQFVPKLGSVNLRISDNDDFQFQPTKFTPVGVN
DDDDGHPFRQWELPNYSGELTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIID
CLIPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLV
VPANGHFRFDSWVNQFYSLAPMGTGNGRRRAQ"
CDS 6653..7432
/codon_start=1
/product="capsid protein VP2"
/protein_id="ULR75171.1"
/translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
SFQHDKEMLQAQVRATKQLQSEMIALKQGVLAAGGFSPTDAARGSIGAPMTKVLDWSG
TRYWAPNSTKTTGYSGQFTSSPVHMSSPNAPQSKPAKPRSLAPSSSSSSVYSMYTQST
HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISQVTPPSSR
ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRF"
ORIGIN
1 caaggaaaaa tcttcaagtg acagcctgtt tgctaacatg tctgttactt ttaagaaagc
61 cctcggggcg cggtctaaac aaccgccccc gggagaaaca aaacaaatac aaaaaccacc
121 aaggccaccg acaccggaat tggtgaagag aatacctcca cccccaccca atggcgagga
181 tgaaccaggg atagtgtaca aggtgggaga gggtgtgtct gggctgcccg acctaacaac
241 tgtggtacaa cctgacgcac aaaacacagc ttatagtgtt cccccactta gccagagaga
301 agtcggcgaa gctaaagaac cgcttcctgg ctccattctg gaaatgtggg atggtgagat
361 ctaccactat gggctgtatg ttgagcgggg gcatgtgctc ggagtacaca aaccacctgc
421 tgcaataagc cttgccaaaa ttgaaataac accgctgtct ctctactgga gagtggtcta
481 cactccccag tatttgatag atcctggaac tcttaagaac ttgagtggag agactttccc
541 atacacggcc tttgacaaca actgttatgc cttctgttgt tgggtcctag acctcaacga
601 ctcctggctt agcaggagaa tgatccaaag aacaactgga ttcttcaaac cttatcagga
661 ttggaacaga aaacccttac caaccatgga tgaaccgaaa atcaagaagg ccgcgaatgc
721 tgtcctatgc gctctctcct cactcttcac tagacccatt aaggacatca ttggaaagct
781 tagaccactg aacattctta atatactggc aacctgcgat tggacttttg caggcatagt
841 ggaatccttg atccttcttg ctgaactctt tggggtgttc tggacacccc cagatgtgtc
901 tgcgatgatt gctcccttac tcggtgacta cgagatgcaa ggccccgaag acctggccgt
961 ggaacttgtg cccgtggtga tgggaggaat aggtttggtg ttaggattca ccaaagaaaa
1021 gatcggcaag atgctttcat cggctgcgac cacacttagg gcctgcaggg atctaggatc
1081 ttatggattg gagatactca aattggtcat gaagtggttc ttccccaaga aggaggaggc
1141 taacgaacta gccatggtga gggccattga ggatgcagtc ctggatttgg aggcaataga
1201 aaacaatcac atgaccaccc ttctcaagga taaagacagc ctggccacat acattaggac
1261 tcttgacttg gaagaagaga aagcaaggaa actgtcaacc aaatcggcgt cacctgacat
1321 cgtgggtaca ataaacgcat tattggctag gatagcagcc gccaggtcac tggtccacaa
1381 ggctaaggag gagctctcga gcagacagag acctgttgtt gtaatgatat caggtagacc
1441 aggtatagga aagacccatc tggccagaga gctagccaag aaagttgcgt caacactgtc
1501 aggcgaccaa aggattggac tggtacctag aaatggcgtc gaccattggg acgcctacaa
1561 gggagaaagg gtggttctgt gggatgatta tggtatgagc aaccctatac aggacgcact
1621 gaggctccaa gaattggctg acacctgtcc tctgacccta aattgtgata ggattgaaaa
1681 caaaggaaaa gtgttcgaca gtgatgccat aattgtaaca accaaccttg caaacccagc
1741 accactagac tatgtcaact ttgaggcctg ctctagacgc atagacttct tggtgtatgc
1801 agacgcacct gacattgaga aggctaagcg tgacttccct ggccaaccag atatgtggaa
1861 agaccatttc aagccagact tctcacacat taaacttcag ctggcaccac agggaggttt
1921 tgacaaaaat ggcaacaccc cacatggtaa aggtgtggtg aagtccctga cgattggttc
1981 tctgatcgcc agggcctccg gcttgctcca cgagagaaag gatgaattcg agctccaagg
2041 ctctgacctg ccaaccttca attttgaccg caacaaagtc gccgccttca gacaattagc
2101 agctgaaaac aaatatggtc ttatggacac actgagggtc ggcaaccaac tgaaaagtgt
2161 taagaccttg gatgagctga agcaggccat aaagaacatc agtatcaaga agtgtcagat
2221 agtgtataat ggatgcacct ataccatgga atctgatggg aggggcaagg ttgtggttga
2281 aaaggtgcaa aacgcaacag ttcaaaccaa caatgaactt gtaggggtgc tccaccacct
2341 gagatctgca aggataagat actatgttaa atgtttccaa gaagccattt actctctact
2401 ccaaattgct ggtgcagcct tcgtcacctc acgcatcgtg aggcgcatga acatatcaaa
2461 cctctggtcg aagccaccca tcgaggaggg tgatgagcct gaagacagag gaggatgccc
2521 caagcccagg gatgaagatg acctcactat tgactctaga gacattaaag tggaagggaa
2581 gaagggcaag aacaagtctg gccggggcaa gaaacacaca gccttctctt ccaagggcct
2641 cagtgatgaa gagtacgatg agtacaagag aatcagagag gagaggaatg gcaaatactc
2701 aatagaggag tacctccaag atagggacag atactatgaa gagcttgcca ttgctaaggc
2761 cactgaggag gacttctgtg aggaggagga gatcaaaatc cgccagagaa tcttccgacc
2821 caccaggaag cagcggaaag aggaaagggc cacgcttggg cttgtcacag gatcggaaat
2881 cagaaagagg aatccagatg actttaaacc aaagggaaaa ttgtgggctg atgacaacag
2941 gagcgtggat tacaatgaga ggatagattt tgaggctccc ccgagtgttt ggtctaggat
3001 agtcaacttt ggcacaggct ggggattctg ggtttctcca agtctcttta taacttcaac
3061 acacgtcata ccagaaggaa tcactgaggc ctttggagtg cccataaacc aaatccaaat
3121 tcacaaatct ggagaatttt gccgcttgcg gtttccaaag ccaattagac cagacgtgag
3181 tgggatgatc ttggaagagg gcgcccctga aggcactgtt gtgtctgttc tcatcaaaag
3241 gacaacaggg gagctgatgc ctcttgcagt cagaatgggg actcatgcca caatgaaaat
3301 ccaaggtaga acggtgggtg gtcagatggg tatgcttctc actggctcaa atgctaaaag
3361 catggatcta ggcacaacgc caggtgactg cggatgtcca tacatataca aaaggggcaa
3421 tgaccttgtg gtcattgggg tgcacactgc agcagctcgt ggaggcaaca cggtcatatg
3481 tgccacacag ggaagtgaag gtgaagccac tcttgaagga ggtgacaaca agggtaccta
3541 ttgtggagcc cccattttgg gacctggcaa tgcaccaaaa ttgagcacaa agacaaaatt
3601 ctggagatcc tctaacgcac cgcttccccc aggtacttat gaaccagcat accttggtgg
3661 gagagacccg cgcgtgaagg gaggcccatc tctgcaacaa gttatgagag accaacttaa
3721 accttttaca gagcccagag ggaagccacc aaacccaaat gtcttagagt cagcaaagaa
3781 gactatcatt aatgttctgg aacaaaccat tgaccctcct caaaagtggt catatgccca
3841 agcttgtgca tccctcgaca agacaacctc cagtggatac ccgcaccacg tccggaagaa
3901 tgactattgg agtggtgaat ccttcacagg aaaacttgca gatcaggctt caaaagcaaa
3961 tctcatgtat gaggaaggca agcacatgca accagtttac accgcagcac tcaaagacga
4021 gctcgtgaaa actgacaaaa tttatggcaa aatcaagaaa agactcctgt ggggttctga
4081 cctctccaca atgattcgat gcgccagagc atttggcggt ctcatggatg aattcaaagc
4141 aaattgtatt acactcccta tcagagttgg tatgaatatg aatgaagatg gtcccataat
4201 atttgagaga cactccaggt acaggtacca ctatgatgct gattactccc gctgggactc
4261 cacacaacag cgggcagtgc tggaagcggc acttgaaatc atggtgagat tttctgctga
4321 gccacagctg gcacaaatag tggcagagga cctgctgtca ccaagtgtgg tcgatgtggg
4381 cgatttcaaa atcgctatca atgaaggcct accatctggc gtgccttgca cctcacaatg
4441 gaattctatt gcccactggt tacttacctt gtgtgccctt tctgaagtga caggattagg
4501 tcctgacatc atacaagcta actccatgta ctctttctat ggtgatgatg agattgtgag
4561 cacagacata aaattggacc cagagaaatt gaccgcaaag ctcaaagaat atggccttaa
4621 acccactcgg cccgacaaaa ctgaggggcc gttggtgatt agtgaggacc tgaatgggtt
4681 gactttcctc cgccgaacag tcacccgtga tccagcaggt tggtttggaa agttggacca
4741 aagctccatc ctcaggcagt tgtactggac aagaggaccc aaccatgaag accccagtga
4801 gaccatgata ccacacgcac aaagacctgt gcagctcatg gcactactag gagaatcctc
4861 cctacatgga ccctcatttt atagcaaggt tagcaaatta gtcatatctg aacttaaaga
4921 gggaggaatg gatttttatg tgcccagaca agagtcaatg ttcagatgga tgaggttctc
4981 agatctaagc acatgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg
5041 cgtcgaatga cgccgctcca tctaatgatg gtgctgctgg tctcgtacca gagggcaaca
5101 acgagaccct tcccctagaa ccagttgcgg gcgcagctat agccgcaccc gtcactggcc
5161 aaaataacat aattgacccc tggattagaa caaattttgt gcaagcacca aatggagagt
5221 tcacagtgtc acccagaaac tctcctggag aaattttatt aaacttagag ttgggccctg
5281 atttgaaccc ttatttggct catttgtcaa ggatgtataa tgggtatgct ggtggagtgg
5341 aagttcaggt tctcctggca gggaacgcgt tcactgccgg gaagatcctc ttcgccgccg
5401 tcccgccaaa tttcccagtg gaattcttaa gcccagccca gattacaatg ctcccacatt
5461 taatagtaga tgttaggact cttgaaccaa ttatgatccc actccctgat gttaggaata
5521 cattcttcca ttatagtaac cagcctaaca gccgcatgag attagtggct atgctctata
5581 ccccactcag atctaatggc tcaggtgatg atgtctttac tgtctcttgc agggttttga
5641 ctaggcctac tcctgatttt gagttcactt atttagtgcc accttctgtt gaatctaaaa
5701 ctaagccttt ttccttacct attttaaccc tttctgagct cacaaattcg aggttcccag
5761 tccccatcga ttcgcttttc accgcccaga ataatgtgtt gcaggtgcag tgtcaaaatg
5821 gcaggtgcac acttgatggt gagttacaag gcacaaccca gttgctccca tctggcatct
5881 gtgcattcag aggacgggtg acagcacaaa ttaaccaacg tgacaggtgg cacatgcaac
5941 tgcaaaacct caatggtaca acatatgacc caactgatga tgtgccagcc ccgctgggta
6001 cacctgactt caagggcgtc gtgtttggga tggtaagcca aagaaatgtg ggtaatgatg
6061 cgcctggctc aaccagagcc caacaggcgt gggtttcaac ctatagcccc caatttgtcc
6121 ccaaattagg ttctgtcaat cttagaatta gtgataatga tgatttccaa ttccagccga
6181 caaaattcac accagtgggc gtcaatgatg acgatgatgg ccacccgttc agacaatggg
6241 aactaccaaa ctattcaggg gagcttacct tgaatatgaa tcttgccccc ccagttgctc
6301 caaattttcc tggtgaacaa ttgttattct tcagatcttt cgtgccatgc tcaggaggtt
6361 acaaccaagg tattatagat tgtcttattc cccaagaatg gatccaacac ttctatcagg
6421 aatcagcacc ctcccagtca gacgtggccc taatcaggta tgtcaacccc gatacgggac
6481 gtacactgtt tgaagcaaaa ttgcacagat ctggttacat tactgtggct cactctggag
6541 actatcctct tgttgttccg gctaatggac actttagatt tgattcttgg gtaaatcagt
6601 tttactcact cgccccaatg ggaactggga atgggcgaag gagggctcag taatggctgg
6661 ggctttcatt gcaggattgg caggcgacat gctcacgtca tctgtgggct cccttgtgaa
6721 cgcaggggca aacgccatca accaaaagat agactttgaa aacaacaaac aactccagtc
6781 tgcttccttt cagcatgata aagagatgct ccaagcgcag gtgagggcaa ccaagcagct
6841 gcaatctgaa atgatagccc taaaacaggg ggttttggcc gcaggcggct tttcccccac
6901 tgatgcagca aggggatcca ttggtgcacc catgacaaag gtgcttgact ggtctggcac
6961 tcgatactgg gcgcccaatt ccacaaagac aactggctat tcgggacaat tcacctcttc
7021 acctgtgcat atgtctagcc caaatgctcc acaatcaaaa cctgcaaagc ctaggtctct
7081 agctccttcc tcttcttcta gcagtgtcta tagtatgtat actcaatcta ctcatttaac
7141 atctggctct tctagtaatg cttcttctgc ctccacaaaa ttgacaaact taagttctgg
7201 ctcctctcaa aacagaacag cagagtgggt aaatcaacag agaagtctta gccctttcat
7261 gagtggcgca cttaacatct cacaagtcac gccaccctca agtagggctt ccagttctgg
7321 gacggtctcg accgtgccca aggaagtttt ggactcctgg acgtctgcgt ttaacacaca
7381 cagacagccg ctcttcgcac acctcagagt gaggggggag tcacggtttt agtgaaaaga
7441 aataattggc tataatgtga tttctttcta aatttggcta attt
//