Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM388564 | GII.3 | |
|
|---|---|---|---|
| GII.P12 |
ORF1: 1..5055
ORF2: 5036..6682
ORF3: 6682..7435
LOCUS OM388564 7435 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS741 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM388564
VERSION OM388564.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7435)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7435)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7435
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS741"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5055
/gene="ORF1"
CDS <1..5055
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP71317.1"
/translation="SNNDNAKSSSDGVLSSMAVTFKRALGARQKQPPPREIPQRPPRP
PTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNTAFSVPPLNQRE
NRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAPLSLFWRP
VYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQRTTGFFR
PYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILNILASCDW
TFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIE
DAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKV
FDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNA
FSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQG
PTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMSELKQALKNVAIKSC
QIVYGGCTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLRCARIRYYVKCVQEAL
YSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEEFVVSSDD
IKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYY
EEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKP
KGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQ
EFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPTGELM
PLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVV
IGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWR
SSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLEAAKK
TIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASK
ANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLME
ELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEIM
VKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCA
LSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGP
LVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQR
PIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWE
GDRNLAPSFVNEDGVE"
mat_peptide <1..945
/gene="ORF1"
/product="p48"
mat_peptide 946..2043
/gene="ORF1"
/product="NTPase"
mat_peptide 2044..2580
/gene="ORF1"
/product="p22"
mat_peptide 2581..2979
/gene="ORF1"
/product="VPg"
mat_peptide 2980..3522
/gene="ORF1"
/product="Pro"
mat_peptide 3523..5052
/gene="ORF1"
/product="RdRp"
gene 5036..6682
/gene="ORF2"
CDS 5036..6682
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP71318.1"
/translation="MKMASSDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6682..>7435
/gene="ORF3"
CDS 6682..>7435
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP71319.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRAAPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGE"
ORIGIN
1 agcaacaacg acaacgcaaa atcttcaagt gacggagtgc tttctagcat ggctgtcact
61 tttaaacgag ccctcggggc acggcaaaaa cagcctcccc cgagggaaat accacaaagg
121 cctccacggc cgcccacccc agaactggtc aaaaagatcc ctcctccccc acccaatggg
181 gaggatgaac tagtggtctc ttatagcgcc aaagatggcg tttctggttt gcctgaactt
241 accactgtct ggcaaccgga tgagaccaac acggcattca gtgttccccc tctcaaccag
301 agggagaaca gggacgccaa ggagccgctg accggaacaa tcctagaaat gtgggacggg
361 gagatctatc attatggtct gtatgtggag cgaggccttg tacttggtgt gcacaaacca
421 ccagctgcca tcagcctcgc caaggttgaa ctagcaccac tctctctgtt ttggaggcca
481 gtgtacacac cacagtatct catctctcca gacactctta ggagactgca tggagagtcg
541 ttcccctaca cagcctttga caacaactgc tatgccttct gttgttgggt tttggaccta
601 aacgactcgt ggttgtgcag gagaatgatc cagagaacaa ctggcttctt cagaccttac
661 caagaatgga acaggaaacc cctccccacc atggatgact ctaaattgaa gaaggtagcc
721 aacatattct tgtgtgcgct atcttcgcta ttcactaggc ccattaaaga cataatagga
781 aaggtgagac cgcttaacat ccttaacatc ctggcctcat gtgattggac ttttgcaggc
841 atagtggaat ctttgatcct cttggcagag ctctttggag ttttctggac acccccagat
901 gtgtctgcga tgatcgcccc cttactaggt gactacgaac tgcaggggcc tgaggacctt
961 gcagtggagc tcgtaccagt agtaatggga gggattggtt tggtgttagg attcaccaaa
1021 gagaagatcg gaaaaatgtt gtcatccgct gcttccacct taagagcttg taaagacctt
1081 ggtgcatacg ggctggaaat cctaaaattg gttatgaaat ggttcttccc aaagaaagag
1141 gaagcgaatg agctagctat ggtgaggtcc atcgaggatg cggtgctgga tctcgaagca
1201 attgagaaca accacatgac tgccctcctc aaagacaaag acagcttggc aacctatatg
1261 aggacccttg acctcgaaga ggagaaagcc aggaagcttt caaccaaatc tgcttcacct
1321 gacatcgtgg gcacaattaa cgccctcctg gcgagaatcg ccgctgcacg ttccctggtg
1381 catcgggcga aagaggaact ctccagcaga ccaagacctg ttgttgttat gatatcaggt
1441 aggccaggga tagggaaaac tcaccttgcc agggagctgg ccaagaagat tgcagcttca
1501 ctcacagggg accagcgcgt gggtctcatc cctcgcaatg gcgttgacca ctgggacgca
1561 tataagggag aaagagtcgt cctgtgggac gattatggaa tgagcaatcc catccacgac
1621 gccctcaggt tacaggaact tgctgacacc tgtcccctta cgctaaactg tgacaggatt
1681 gagaacaaag gaaaggtctt tgatagtgat gccataatca tcaccactaa tctagccaac
1741 ccagcaccat tggactatgt caactttgaa gcatgctcga ggcgcattga cttcctcgtg
1801 tacgcagaag cccctgaggt cgagaaagca aagcgtgatt tcccaggtca acctgacatg
1861 tggaagaacg catttagctc tgacttctcg cacataaaac tggcgctggc tccgcagggt
1921 ggtttcgaca agaacgggaa caccccacac gggaaaggcg tcatgaaaac cctcaccact
1981 ggttccctca tcgcccgagc atcagggcta ctccatgaga ggttggatga gtacgagctg
2041 cagggcccaa ctcccaccac cttcaatttt gaccgcaaca aggtgcttgc gttcagacaa
2101 cttgccgccg aaaacaagta tggattgttg gacacaatga gagttggaaa acagctcaag
2161 gatgttaaga ccatgtcaga gctcaaacag gcactcaaga atgtcgcaat caagagttgt
2221 cagatagtgt atggtggctg cacctacagg cttgagtctg atggcaaggg tgatgtaaaa
2281 gttgacagag ttcagaacgt cactgtacag accaacaatg agcttgccgg cgcattacac
2341 catcttaggt gcgccagaat cagatattat gtcaagtgtg ttcaggaggc cctgtattcc
2401 atcatccaaa tcgctggggc cgcatttgtt accacacgca ttgtcaagcg catgaacata
2461 caagatctct ggtccaagcc acaggtggag gacacagagg aaatcgctag caaggatggg
2521 tgcccaaaac cccaggatga tgaagagttt gttgtctcat ccgatgacat caaaaccgag
2581 ggcaagaaag ggaagaacaa atctggccgt ggcaagaagc acacagcatt ttcaagtaaa
2641 ggtctcagtg atgaagagta cgatgagtac aaaagaatta gagaagaaag aaatggcaaa
2701 tactccatag aggaatacct ccaggacaga gacaggtatt atgaggaggt ggccatcgcc
2761 agggcaaccg aagaggactt ctgtgaagaa gaagaggcca agatccgaca gaggatcttc
2821 aggccaacaa ggaaacaacg caaagaggag agagcctctc tcggtttggt cacaggttct
2881 gaaattagga agaggaaccc agacgacttc aagcctaaag gaaagctgtg ggctgatgat
2941 gacaggagtg ttgactacaa tgagaagctc aactttgaag ccccaccaag catctggtcg
3001 aggatagtca actttggctc aggctggggc ttttgggttt cccccagcct gttcataaca
3061 tcaactcatg tcatacccca gggcgcacag gagttctttg gtgtacccat caaacaaatc
3121 cagatacata aatcaggtga attctgccgc ttgaggtttc caaagccgat cagaactgat
3181 gtgacaggca tgatcttaga agaaggtgca cccgaaggaa ccgtggtcac attactcatc
3241 aaaagaccaa ctggagagct catgcccctg gcagccagaa tgggaaccca cgcaaccatg
3301 aagatacaag ggcgcactgt tggaggtcaa atgggcatgc tcctaacagg atccaacgcc
3361 aagagtatgg acctgggcac cacaccaggt gactgtggct gcccctacat ttacaagagg
3421 gggaatgact acgtggtcat tggggtccat acagcagccg cccgtggagg aaacactgtc
3481 atttgtgcca cccaggggag cgagggagaa gccacacttg aaggcggtga tagcaagggg
3541 acttactgcg gagcaccaat cttaggtcca ggaagtgccc caaaactcag caccaagacc
3601 aagttctgga gatcatccac ggcaccactc ccacctggca cctatgaacc agcttacctt
3661 ggtggcaagg accccagagt taagggtggc ccttcactgc aacaagttat gagggatcaa
3721 ctgaaaccat tcactgagcc taggggtagg ccaccaaaac caagtgtgct agaagctgcc
3781 aagaaaacca tcgtcaatgt cctagaacag acaattgacc cacctcaaaa atggtcgttt
3841 gcgcaggcat gcgcatccct agacaagacc acttctagcg gccatccgca ccacatgcgg
3901 aagaatgact gctggaacgg ggagtccttc acaggaaaat tggcagacca ggcttccaag
3961 gccaacctga tgtttgagga gggaaagaac atgacaccag tttacacggg tgcgcttaag
4021 gacgagctgg tcaagactga caagatttat ggtaagatca aaaagaggct tctctggggt
4081 tcggacctgg cgaccatgat tcggtgcgct cgagcattcg ggggtctgat ggaggaactc
4141 aaagcacatt gtgtcacact acctgttagg gtgggtatga atatgaatga ggatggccct
4201 atcatctttg agagacactc cagatataaa tatcattatg atgctgacta ctcccggtgg
4261 gattcaacac aacaaagagc cgtgttggca gcagccttgg aaatcatggt caagttttcc
4321 ccagagccac acctggccca aaaggttgca gaagaccttc tttctcccag cgtgatggac
4381 gtgggtgatt tcaaaatatc aatcaatgag ggtctcccct ccggagtgcc ctgcacctcc
4441 caatggaatt ccatcgccca ctggctcctc actctctgtg cactctctga ggttacaaac
4501 ctgtcccctg acattattca ggccaactcc ctcttttctt tctacggtga tgatgaaatt
4561 gtgagtacag atataaaatt ggacccagaa aaactgacag caaaactcaa ggaatacggg
4621 ttgaaaccga cccgccctga caaaactgag gggcctcttg tcatttccga agacctgaat
4681 ggcctaacct tcctgcggag gaccgtgact cgcgacccag caggctggtt tggaaagttg
4741 gaacagagct caatactcag acaaatgtac tggactaggg gccccaacca tgaagatcca
4801 tctgaaacaa tgataccaca ctcccagagg cccatacaat tgatgtcttt gctgggcgag
4861 gcagcactcc acggcccagc attctacagc aaaatcagca aattggtcat tgcagagttg
4921 aaggagggtg gcatggattt ttacgtgcca agacaagaac caatgttcag atggatgaga
4981 ttctcggatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa
5041 gatggcgtcg agtgacgccg ccccatctaa tgatggtgcc gccggcctcg tcccagagat
5101 caacaatgag gcaatggcgc tagatccagt ggcgggtgca gcgatagcag cacccctcac
5161 cggccagcaa aatataattg atccctggat tatgaataat tttgtgcaag cacctggtgg
5221 tgagttcaca gtgtctccta ggaattcccc tggtgaagtg ctcctcaatt tggaattggg
5281 cccagagata aacccctatc tggcccatct tgctagaatg tacaatggtt atgcaggtgg
5341 gtttgaagtg caggtagtcc tggctggaaa tgcgtttaca gcaggaaaga taatctttgc
5401 agctataccc cctaacttcc caattgacaa tctaagtgca gcacagatca caatgtgccc
5461 acatgtgatt gtggatgtca ggcagctgga accagtcaac ctcccgatgc ctgacgttcg
5521 caataacttc ttccactaca accaagggtc tgattcgaga ttgcgcttgg ttgcaatgct
5581 gtatacacct cttagggcaa ataactctgg ggatgatgtt ttcactgtgt cttgtagagt
5641 gctgactaga cctagtcctg aattttcatt taacttcctt gtgccaccca ctgtggagtc
5701 aaagacaaaa ccctttaccc tcccaattct gactatttct gaaatgtcta attctaggtt
5761 tccagtgccg attgattctc tgcacaccag cccaactgag aatattgttg tccagtgtca
5821 aaatggacgc gtcactcttg atggtgagtt gatgggcacc actcagctcc tacctagtca
5881 aatctgtgct ttcaggggcg tgctcactag atcaacaagc agagctagtg accaggccga
5941 cacagcaacc cctagattgt tcaattatta ttggcacata caattggata atctaaatgg
6001 gactccttat gatcctgcag aagacatacc aggcccccta gggacaccag attttcgggg
6061 taaagtcttt ggcgtggcca gccaaagaaa ccccgacagt acaactagag cacatgaagc
6121 aaaggtggac acaacagctg gtcgcttcac cccaaaacta ggctcattag agatatccac
6181 tgaatctagt gactttgacc aaaaccaacc aacaagattc accccagttg gcattggggt
6241 tgaccatgag tcagatttcc agcaatggtc cttacccgac tactctggtc agttcaccca
6301 caacatgaac ttggccccag ctgttgcccc caatttccct ggtgagcagc tccttttctt
6361 ccgctcacag ttaccatctt ctggtgggcg atccaatggg attctagatt gcctggtccc
6421 ccaagaatgg gtccagcact tctaccaaga atcagccccc gcccaaaccc aggtggctct
6481 ggttagatat gttaaccctg acactggtag agtgctgttt gaggccaagc tgcacaaatt
6541 aggtttcatg actatagcta agaatggtga ttctccaata actgtccccc caaatggata
6601 ctttaggttt gaatcttggg tgaacccatt ttatacactc gcccccatgg gaactgggaa
6661 tgggcgtaga agggttcaat aatggctggt gcttttatag caggattagc tggtgacata
6721 tttacaaata ctgtagggtc tttggttaat gcaggggcta atgctattaa tcaaaaagtt
6781 gactttgaaa ataataaata tttgcaaaat gcttccttca accatgataa ggaaatgttg
6841 aatgcacaga ttgaggcaac aaagagatta caggctgata tgattgctat caaacagggg
6901 gttttgaccg caggcggctt ttcccccact gatgcagctc gtggggcaat caacgccccc
6961 atgacaaaag tcctagattg gaatggaaca aggtactggg caccaagtgc cacctctacg
7021 acctcgatgt cgggtggctt cacaaaccag gctgtgcaca gaaccacgcc aaattttaaa
7081 atgaaccagg cccccagagc cgcacccagc agtgggtctt cagtgaggtc actctcaacc
7141 caagtcacta gtctgagctc acactcgtcc gggtcgtctc ggtccagcgg gtctacagtt
7201 gctagctcat taccatcctc taataggact agggactggg tcaatcagca aaatttcaat
7261 ttggaaccac acatgcctgg gtcacttagg acagcttttg tcactccacc atctagtaca
7321 gcctctagtt caggcactgt ctcaaccgtg cccaaaaatg ttttggactc ctggacatct
7381 gcgtttaaca cgcgcagaca gccgctattc gcacaccttc gtagaagggg ggagt
//