Typing tool
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Typing tool
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Complete norovirus genomes
| OM386843 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5073
ORF2: 5054..6676
ORF3: 6676..7482
LOCUS OM386843 7506 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS759 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM386843
VERSION OM386843.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS759"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5073
/gene="ORF1"
CDS <1..5073
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP38461.1"
/translation="AAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIP
PRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVP
PLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPL
SLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR
TTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNI
LATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIV
MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA
MVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVG
TINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLT
GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI
ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP
DMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLD
EYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKN
IAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVK
CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEF
VVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ
DRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN
PEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV
IPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR
PTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR
GNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLST
KTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNV
LEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKL
ADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARA
FGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLA
AALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHW
LLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRP
DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETM
IPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFS
DLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..963
/gene="ORF1"
/product="p48"
mat_peptide 964..2061
/gene="ORF1"
/product="NTPase"
mat_peptide 2062..2598
/gene="ORF1"
/product="p22"
mat_peptide 2599..2997
/gene="ORF1"
/product="VPg"
mat_peptide 2998..3540
/gene="ORF1"
/product="Pro"
mat_peptide 3541..5070
/gene="ORF1"
/product="RdRp"
gene 5054..6676
/gene="ORF2"
CDS 5054..6676
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38462.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6676..7482
/gene="ORF3"
CDS 6676..7482
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38463.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSTLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 gctgccgctg ttgccaacag caacaacgac atcgcaaaat cttcaagtga cggtgtgttt
61 tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc ggcctaaaca gccgcccccg
121 aaggaaatac cacccagacc cccgcgacca cccacaccag aattggtcaa aaagatccct
181 cctcccccac ccaacgggga ggatgaacta gtggtctctt acaacgccaa agatggcgtt
241 tccggactgc ctgagctcac cactgtcaga caaccggaag aaaccaacac ggcgttcagt
301 gtccccccac tcaaccaaag ggagagcagg gacgccaagg agccactaac tgggacaatc
361 attgaaatgt gggatggaga aatctaccat tacggcctgt acgtggaacg aggtcttata
421 cttggtgtgc acaagccacc agcagccatc agcctcgcta aggtcgagct ggcaccactc
481 tctttgttct ggagacctgt atacaccccc cagtacctta tctctccaga cactcttagg
541 agattacatg gagagtcatt cccctacact gcatttgaca acaattgcta cgccttttgt
601 tgttgggtat tagacctaaa cgactcatgg ctaagcagga gaatgattca gagaacaaca
661 ggcttcttta ggccgtacca ggattggaac aggaaacccc tccccactat ggatgattcc
721 aaattaaaga aggtagccaa catatttttg tgcactttgt cttcactatt caccaggccc
781 atcaaggaca taatagggaa gttgaaacct ctcaacatcc ttaatattct ggctacatgt
841 gattggacct tcgcaggcat agtggaatcc ttaatactct tggcagaact ctttggagtt
901 ttctggacac ccccagatgt gtctgcgatg atcgccccct tgctaggtga ttatgaactg
961 caaggacccg aggaccttgc agtggaactg gtcccaatag tgatgggagg gataggtttg
1021 gttctaggat ttaccaaaga gaagatcgga aagatgctgt catcagctgc atccacttta
1081 agagcttgta aagaccttgg tgcatacgga ctggaaatct taaaattggt catgaagtgg
1141 ttcttcccaa agaaagagga agcaaatgaa ctggctatgg tgagatccat cgaggatgcg
1201 gtactagacc tcgaggcaat tgaaaacaac cacatgacca ccctgctcaa agacaaagac
1261 agcttgacaa cctacatgag aacccttgac cttgaggagg agaaagccag aaaactctca
1321 accaaatctg cttcacccga tattgtgggc acaatcaact ctcttctggc aagaatcgct
1381 gctgcacgct ccctagtgca tcgggcgaaa gaagagctct ccagcaggcc gagacctgtc
1441 gttgtaatga tatcgggaag accagggata gggaaaactc accttgccag ggagctggcc
1501 aagaagatcg cggcctccct cacaggggac cagcgtgtgg gccttatccc acgcaatggt
1561 gtcgaccact gggacgcata caagggcgaa agggttgtcc tatgggacga ctatggaatg
1621 agcaacccca tccatgatgc ccttaggttg caggagcttg ctgacacttg ccccctcacg
1681 ctaaattgtg acagaattga gaacaaagga aaagtctttg acagtgacgc cataattatc
1741 accaccaacc tggccaaccc agcaccactg gattatgtca actttgaagc gtgctcgaga
1801 cgcattgatt tcctcgtgta cgcagaagcc cctgaggtgg agaaggcaaa gcgcgacttc
1861 ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg acttctcaca cataaaactg
1921 tcattggctc cacagggtgg ttttgacaag aacggcaaca ccccgcatgg aaaaggggtc
1981 atgaagaccc tcaccactgg ctccctcatc gcccgagcat cagggttact ccatgagagg
2041 ctagatgaat atgaattgca aggcccagcc ctcaccactt tcaactttga ccgcaacaag
2101 atacttgctt ttagacagct cgctgctgaa aacaagtatg ggctgatgga cacaatgaga
2161 gttggaaaac agctcaagga tgtcaagact atgtcagacc tcaaacaggc actcaagaac
2221 atcgcgatca agaagtgcca gatagtgtac aatggtggca cctacacact tgaggctgat
2281 ggcaagggca gtgtgaaagt tgacaaagtg caaagtgcca ctgtgcagac caacaatgaa
2341 ctagccggtg ccctacacca cctaagatgc gctagaatca gatactatgt taagtgcgtc
2401 caggaggcac tgtattccat catccaaatc gctggggctg cattcgtcac cacgcgcatc
2461 gctaagcgca tgaatataca gaatctctgg tccaagccac aggtggaaga cacagaagag
2521 atggccaaca aagatggttg cctaaaaccc aaagatgatg aagagtttgt cgtttcatcc
2581 gacgacatca aaactgaggg caagaaaggg aagaacaagt ctggccgcgg caagaagcac
2641 acagcctttt caagtaaagg gctcagtgat gaggagtatg atgagtacaa gagaatcaga
2701 gaagaaagga atggtaagta ctccatagaa gagtaccttc aggacagaga caggtactac
2761 gaggaggtgg ccattgccag ggcaaccgaa gaggacttct gtgaagagga ggaggccaaa
2821 atccggcaga ggattttcag accaacaagg aaacaacgca aagaagagag ggcttctctc
2881 ggcttggtca caggctctga aatcaggaag agaaacccag aagacttcaa acccaaggga
2941 aagctgtggg ctgatgacga cagaagtgtt gactacaatg agaaactcaa ctttgaggcc
3001 ccaccaagca tctggtcgcg gatagtcaac tttggttcag gctggggctt ctgggtctcc
3061 cccagtctgt ttataacatc aacccatgtc ataccccaag gtgcaaagga gttcttcgga
3121 gtccctatca agcaaatcca gatacacaag tcaggtgaat tctgccgatt gagattccca
3181 aagccaatca gaaccgatgt gacgggcatg attctagaag aaggtgcgcc cgaggggacc
3241 gtggccacac tgctcatcaa gagaccaact ggagagctca tgcctctggc agccagaatg
3301 gggacccatg caaccatgaa aattcagggg cgcacagttg gagggcaaat gggtatgctc
3361 ctgacaggat ccaacgccaa gagtatggac ctaggcacaa caccaggcga ctgcggctgc
3421 ccctacatct acaagagggg gaatgactac gtggtcatag gggtccatac ggctgctgcc
3481 cgtggaggaa acactgtcat atgtgccacc cagggaagtg agggagaggc cacacttgaa
3541 ggaggtgaca gtaaagggac atactgtggc gcaccaatct tgggcccagg gagcgctccg
3601 aagctcagca ccaagaccaa gttttggaga tcatccacaa caccactccc acctggcacc
3661 tacgaaccag cctacctcgg tggcaaagac cctagagtca aaggtggccc ttcattgcaa
3721 caagttatga gggaccagct gaagccattc acagaaccca gaggcaaacc accaagacca
3781 aatgtgttgg aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca
3841 ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg acaaaaccac ctccagcggc
3901 cacccgcacc acatgcggaa aaacgactgt tggaatgggg agtccttcac aggaaagttg
3961 gctgaccaag cctccaaggc caacctaatg tttgaagagg gaaagaacat gactccagtc
4021 tacacaggtg cacttaaaga tgagttggta aagaccgata aagtttatgg taaggtcaag
4081 aagaggcttc tatggggttc agatctggcg accatgatac ggtgcgcccg agcttttgga
4141 ggcctcatgg atgaactcaa ggcacactgt gtcacactcc ctgtcagagt tggtatgaac
4201 atgaatgagg atggccccat catcttcgag aagcactcca gatatagata tcattatgat
4261 gctgactatt cccggtggga ctcaacacaa caaagggatg tgctagcagc agcactagaa
4321 atcatggtta agttctctcc agaaccacac ctggcccaga tagttgcaga agacctcctt
4381 tcccctagcg tgatggatgt gggtgacttt caaatatcaa taagtgaggg tctcccctct
4441 ggggtgcctt gcacctctca gtggaattcc atcgcccact ggctcctcac tctgtgtgca
4501 ctctctgaag tcacggacct gtcccctgat atcattcagg ccaactccct tttctccttc
4561 tatggtgatg atgagattgt aagcacagac ataaagttgg acccagagag gctaacagca
4621 aaactcaagg agtacgggct gaaaccaacc cgccccgaca aaactgaagg acccctcgtc
4681 atctctgaag acctggatgg tctgacattc ctccggagaa ctgtgacccg tgatccagct
4741 ggctggtttg gaaaattgga acaaagttca attcttaggc aaatgtactg gaccaggggt
4801 cccaaccatg aagacccatt tgaaacaatg ataccacact cccaaagacc catacaattg
4861 atgtccttgc tgggcgaggc tgcactccac ggcccggcat tctacagcaa aatcagcaaa
4921 ttagtcattg cagagttgaa ggaaggtggc atggattttt acgtacccag acaagagcca
4981 atgttcaggt ggatgagatt ctcggatctg agcacgtggg agggcgatcg caatctggct
5041 cccagttttg tgaatgaaga tggcgtcgag tgacgtcaac ccatctgatg ggtccgcagc
5101 caacctcgtc ccagaggtca acaatgaggt tatggctctg gagcccgttg ttggtgccgc
5161 cattgcggca cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt
5221 tgtacaagcc cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatact
5281 atggagcgcg cccttgggcc ctgatctaaa tccctacttg tctcatttgg ccagaatgta
5341 caatggttat gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg cgttcaccgc
5401 cgggaaggtc atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag
5461 ccaggtcact atgttccccc atatagtagt agatgttagg caactagaac ctgtgttgat
5521 tcccttaccc gatgttagga ataatttcta ccattataat caatcaaatg atcccaccat
5581 caagttgata gcaatgttgt atacaccact tagggctaat aatgctgggg atgatgtctt
5641 cacagtctct tgccgagttc tcacgagacc atcccccgat tttgacttca tatttctagt
5701 gccacccaca gttgagtcaa gaactaaacc attctctgtc ccagttttaa ctgttgagga
5761 gatgaccaat tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcagtgc
5821 ctttgttgtc caaccacaaa acggtaggtg cacgactgat ggcgtgctcc taggcaccac
5881 ccaactgtct cctgtcaaca tctgcacctt tagaggagat gtcacccata tcacaggtag
5941 tcataactat acaatgaatt tggcttctca aaattggagt aactacgacc caacagaaga
6001 aatcccagcc cctctaggga ctccagactt tgtggggaag attcaaggca tgcttaccca
6061 aaccacaagg acagatggct caacacgcgg ccacaaagcc acagtgtaca ctgggagcgc
6121 cgactttgct ccaaaactgg gtagagttca atttgaaact gacacaaaca atgattttga
6181 agctaaccaa aacacaaagt tcaccccagt tggtgtcatc caagatggtg gcaccaccca
6241 tcgaaatgaa ccccaacagt gggtactccc aagttactca ggcaggaaca ctcctaatgt
6301 gcatctggcc cccgctgtgg cccccacttt tccgggtgag caactcctct tctttagatc
6361 caccatgccc ggatgcagcg ggtaccccaa catggatttg gattgtctgc tcccccagga
6421 atgggtgcag tacttctacc aggaggcagc cccagcacaa tctgatgtgg ctctgctaag
6481 atttgtgaat ccagacacag gtagggtttt gtttgaatgt aagcttcata aatcaggcta
6541 tgttacagtg gctcacactg gccaacatga tttggttatc ccccccaatg gttattttag
6601 gtttgattcc tgggtcaacc agttttacac gcttgccccc atgggaaatg gagcggggcg
6661 tagacgtgca ctataatggc tggagctttc tttgctggat tggcatctga tgtccttggc
6721 tctggacttg gttcccttat caatgctggg gctggggcca tcaaccaaaa agttgagttt
6781 gaaaataaca gaaaattgca acaagcatcc ttccaattta gcagcactct acaacaggct
6841 tcctttcaac atgacaaaga gatgctccaa gcacaaattg aggctaccaa aaggttacaa
6901 caggaaatga tgaaagttaa gcaggcaatg ctcctagagg gtgggttctc tgagacagat
6961 gcagcccgcg gggcaatcaa cgcccctatg acaaaagcct tggactggag cgggacaagg
7021 tactgggctc ctgatgctag gactacaaca tacaatgcag gccgcttttc caccccccaa
7081 ccatcagggg cgctgccagg aagagctaat tttagggatg ctgtccctgc tcggggttcc
7141 tctagtaagt cttctaattc ttctactgct acttctgtgt attcaaatca aactacttca
7201 acgagacttg gttctacagc tggttctggt accagtgtct cgagcttccc gtcaactgca
7261 aggactagga gctgggttga ggaccaaagt aggaatttgt cacctttcat gaggggggcc
7321 cacaacatat cgtttgtcac cccaccatct agcaggtcct ctagccaagg cacagtctca
7381 accgtgccta aagagatttt ggactcctgg actggcgctt tcaacacgcg caggcagcca
7441 ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt aatgtgaaaa gacaaaattg
7501 attatc
//