Typing tool
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Typing tool
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Complete norovirus genomes
| OM386792 | GII.3 | |
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| GII.P12 |
ORF1: 1..5090
ORF2: 5071..6717
ORF3: 6717..7481
LOCUS OM386792 7491 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS674 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM386792
VERSION OM386792.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7491)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7491)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7491
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS674"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP38444.1"
/translation="SNDASAAAAANGNNDNAKSSSDGMLSSMAVTFKRALGARQKQPP
PREIPQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNT
AFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCR
RMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPL
NILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSAS
PDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELARKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLL
HERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKGVKTMSELK
QALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQ
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTIICATQGSEGEATLEGGDSKGTYCGAPILGPGNA
PKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRP
PKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMI
RCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQ
RAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGL
KPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..980
/gene="ORF1"
/product="p48"
mat_peptide 981..2078
/gene="ORF1"
/product="NTPase"
mat_peptide 2079..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6717
/gene="ORF2"
CDS 5071..6717
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38445.1"
/translation="MKMASSDATPSSDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHEADFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6717..7481
/gene="ORF3"
CDS 6717..7481
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38446.1"
/translation="MAGAFIAGLAGDILTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIESTKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPNATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGPTVASSLPSSNRTRDWVNQQNFNLEPHLPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgctg ctaatggcaa caacgacaac gcaaaatctt
61 caagtgacgg aatgctttct agcatggctg tcacttttaa acgagccctc ggggcgcggc
121 aaaaacagcc tcccccgagg gaaataccac agaggcctcc acggccaccc accccagaac
181 tggtcaaaaa gatccctcct cccccaccca atggggagga tgagctagtg gtctcttata
241 gcgccaaaga tggcgtctct ggtttgcctg aacttaccac tgtctggcaa ccggatgaga
301 ccaacacggc gttcagtgtc ccccctctca accagaggga gaacagagac gccaaggagc
361 cgctgaccgg aacaatcctg gaaatgtggg acggggagat ctatcattat ggtctgtatg
421 tggagcgagg ccttgtactt ggtgtgcaca aaccaccagc tgccatcagc ctcgccaagg
481 ttgaactagc accactctct ctgttttgga ggccagtgta cacaccacag tatctcatct
541 ctccagacac tcttaggaga ctgcatggag agtcattccc ctacacagcc tttgataaca
601 actgctatgc cttctgttgt tgggttctgg acctaaacga ctcgtggttg tgtaggagaa
661 tgatccagag aacaactggc ttcttcaggc cttaccaaga atggaacagg aaacccctcc
721 ccaccatgga tgactctaaa ttgaagaagg tagccaacat attcttgtgt gcgctatctt
781 cgctattcac taggcccatc aaagacataa taggaaaggt gagaccgctc aacatcctta
841 acatcctagc ctcatgtgat tggacttttg caggcatagt ggaatctttg atcctcttgg
901 cagagctctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttac
961 taggtgacta cgaactgcag gggcctgagg accttgcagt ggaactcgta ccagtagtaa
1021 tgggagggat tggtttggtg ttaggattca ccaaagagaa gatcggaaaa atgttgtcat
1081 ccgctgcttc caccttaaga gcttgtaaag accttggtgc atacgggctg gaaatcctaa
1141 aattggtcat gaaatggttc ttcccaaaga aagaggaagc aaatgagcta gctatggtga
1201 ggtccatcga ggatgcggtg ctggacctcg aagcaattga gaacaaccac atgactgccc
1261 tcctcaaaga caaagacagc ttggcaacct acatgaggac ccttgacctc gaggaggaga
1321 aagccaggaa gctttcaacc aagtctgctt cacctgacat cgtgggcaca atcaacgctc
1381 ttctggcgag aatcgccgct gcacgttccc tggtgcatcg ggcgaaagag gaactctcca
1441 gcagaccaag acctgtcgtt gttatgatat caggtaggcc agggataggg aaaactcacc
1501 ttgccaggga gctagccagg aagatcgcag cttcactcac aggggaccag cgcgtgggtc
1561 tcatccctcg caatggcgtt gaccactggg atgcatacaa gggagaaaga gtcgtcctat
1621 gggacgatta tggaatgagc aatcccatcc acgacgccct caggttacag gaacttgctg
1681 acacctgccc ccttacgcta aactgtgaca ggattgagaa caaaggaaag gtctttgaca
1741 gtgatgccat aatcatcacc accaatctag ccaacccagc accattggac tatgtcaact
1801 ttgaagcatg ctcgaggcgc attgacttcc tcgtgtacgc agaagcccct gaggtcgaga
1861 aagcaaagcg tgatttccca ggccaacctg acatgtggaa gaacgcattt agctctgact
1921 tctcgcacat aaaactggcg ctggctcccc agggtggttt cgacaagaac ggaaacaccc
1981 cacacgggaa aggcgtcatg aaaaccctca ccactggttc cctcatcgcc cgagcttcag
2041 ggctactcca cgagaggttg gatgaatacg agctgcaggg cccaactccc accaccttta
2101 actttgaccg caacaaggtg ctagcgttca gacaacttgc tgccgaaaac aagtatggac
2161 tgctggacac aatgagagtt ggaaaacagc tcaagggtgt taagaccatg tcagagctca
2221 aacaggcact caaaaatgtc gcaattaaga gttgtcagat agtgtatggt ggctgcacct
2281 acaggcttga gtctgatggc aagggtgatg taaaagttga cagagttcag aacgccacag
2341 tgcagaccaa caatgagctt gccggcgcac tacatcatct taggtgcgcc agaatcagat
2401 attatgttaa gtgtgttcag gaggccctgt attccatcat ccaaatcgct ggggctgcat
2461 ttgttaccac gcgcattgtc aagcgcatga acatacaaga tctctggtcc aagccacagg
2521 tggaggacac agaggaaatt gctagcaagg atgggtgccc aaaaccccag gatgatgaag
2581 agtttgttgt ctcatccgat gacatcaaaa ccgagggcaa gaaagggaag aacaagtctg
2641 gccgtggcaa gaagcacaca gcattttcaa gtaaaggtct cagtgatgaa gagtacgatg
2701 agtacaaaag aattagagaa gaaagaaatg gcaaatactc catagaggaa tacctccagg
2761 acagagacag atattatgag gaggtggcca ttgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaagatc cgacagagga tcttcaggcc aacaaggaaa caacgcaaag
2881 aggagagagc ctctctcggt ttggtcacag gttctgagat caggaagagg aacccagacg
2941 acttcaagcc taaaggaaag ctgtgggctg atgatgacag gagtgttgac tacaatgaga
3001 aactcaattt tgaggcccca ccaagcatct ggtcgaggat agtcaacttt ggctcaggtt
3061 ggggcttttg ggtttccccc agcctgttca taacatcaac tcatgtcata ccccagggcg
3121 cacaggagtt ctttggtgta cccatcaaac aaatccagat acacaagtca ggtgaattct
3181 gccgcttgag gtttccaaag ccgatcagaa ctgacgtgac aggcatgatc ttagaagaag
3241 gtgcacccga agggaccgtg gtcacattac tcatcaaaag accaactgga gagctcatgc
3301 ccctggcagc cagaatggga acccacgcaa ccatgaagat acaagggcgc actgttggag
3361 gtcaaatggg catgctccta actggatcca acgccaagag tatggacctg ggcaccacac
3421 caggtgactg tggctgcccc tacatttaca agagggggaa tgactacgtg gtcattgggg
3481 tccatacagc tgctgcccgt ggaggaaaca ctatcatttg tgccacccaa gggagcgagg
3541 gagaagccac actcgaaggc ggtgatagca aggggaccta ctgcggtgca ccaatcttag
3601 gcccaggaaa tgccccaaaa ctcagcacca agactaaatt ctggaggtca tccacggcac
3661 cactcccacc tggtacctat gaaccagctt acctcggtgg caaggacccc agagttaagg
3721 gaggcccttc actgcaacaa gttatgaggg atcaactaaa accattcact gagcctaggg
3781 gtaggccacc aaaaccaagt gtgctggaag ctgccaagaa gaccatcgtc aatgtcctag
3841 aacagacaat tgacccacct caaaaatggt cgtttgcgca ggcatgcgca tccctagaca
3901 agaccacttc tagcggccat ccgcaccaca tgcggaagaa tgactgctgg aacggggagt
3961 ccttcacagg aaaattggca gaccaggctt ccaaggccaa cctgatgttt gaggagggga
4021 agaacatgac cccagtttac acgggtgcgc ttaaggacga gctggtcaag actgacaaga
4081 tttatggtaa gattaaaaag aggcttctct ggggttcgga tctggcgacc atgattcggt
4141 gcgctcgagc attcgggggt ctgatggagg aactcaaagc acattgtgtc acactacctg
4201 ttagggtggg tatgaatatg aatgaggatg gccctatcat ctttgagaga cactccagat
4261 acaaatatca ctatgatgct gactactccc ggtgggattc aacacaacaa agagctgtgt
4321 tggcagcagc cttagaaatc atggtcaagt tttccccaga gccacacctg gcccaaaagg
4381 ttgcagaaga ccttctttct cccagcgtga tggacgtggg tgatttcaaa atatcaatca
4441 atgagggtct cccctccgga gtgccctgca cctcccaatg gaattccatc gcccactggc
4501 tcctcactct ctgtgcactc tccgaggtta caaatctgtc ccctgatatt attcaggcta
4561 actctctctt ttctttttac ggtgatgatg aaattgtgag tacagacata aaattggacc
4621 cagaaaaact gacagcaaaa ctcaaggaat acgggttgaa accgacccgc cctgataaaa
4681 ctgaagggcc tcttgtcatt tccgaagacc tgaatggcct aaccttcctg cggaggaccg
4741 tgactcgcga cccagcaggc tggtttggaa agttggaaca gagctcaata ctcagacaaa
4801 tgtactggac tagaggcccc aaccatgaag atccatctga aacaatgata ccacactccc
4861 agaggcccat acaattgatg tctttgttgg gtgaggcagc gctccacggc ccagcattct
4921 acagcaaaat cagcaaactg gtcattgcag aattgaagga gggtggcatg gatttttacg
4981 tgccaagaca agaaccaatg ttcagatgga tgagattctc ggatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga cgccacccca
5101 tctagtgatg gtgccgccgg cctcgtccca gagatcaaca atgaggcaat ggcgctagat
5161 ccagtggcgg gtgcagcgat agcagcaccc ctcaccggcc agcaaaatat aattgatccc
5221 tggattatga ataattttgt gcaagcacct ggtggtgagt tcacagtgtc tcctaggaat
5281 tcccctggtg aagtgctcct taatttggag ttgggcccag agataaaccc ctatctggcc
5341 catcttgcta gaatgtataa tggttatgca ggtgggtttg aagtgcaggt agtcctggct
5401 ggaaatgcgt ttacagcagg aaagataatc tttgcagcta taccccctaa cttcccaatt
5461 gacaatttaa gtgcagcaca gatcacaatg tgcccacatg tgattgtgga tgtcaggcag
5521 ctggaaccgg tcaacctccc gatgcctgac gttcgcaaca atttcttcca ctacaaccaa
5581 gggtctgatt cgagattgcg cttggttgca atgctgtaca cacctcttag ggcaaataac
5641 tctggagatg atgttttcac tgtgtcttgt agagtgctga ctagacctag tcctgaattt
5701 tcatttaatt tccttgtgcc acccactgtg gagtcaaaga caaaaccttt taccctccca
5761 attctgacta tctctgaaat gtctaattct aggtttccag tgccgattga ttctctgcac
5821 accagcccaa ctgagaatat tgttgtccaa tgtcaaaatg gacgcgtcac tcttgatggc
5881 gagttgatgg gcaccactca gctcttacct agtcaaatct gcgctttcag gggcgtgctc
5941 actagatcaa caagcagggc tagtgaccag gccgacacag caacccctag attgtttaat
6001 tattattggc acatacaatt ggataatcta aatgggactc cttatgatcc tgcagaagac
6061 ataccaggcc ccctagggac accagatttc cggggcaaag tctttggcgt ggccagccaa
6121 agaaaccccg acagtacaac tagagcacat gaagcaaagg tggacacaac agctggtcgc
6181 ttcaccccaa aactaggctc attagagata tccactgaat ctgatgactt tgaccaaaac
6241 caaccaacaa gattcacccc agttggcatt ggggttgacc acgaggcaga cttccaacaa
6301 tggtccttac ccgattactc tggccagttc actcacaaca tgaacttagc cccagctgtt
6361 gctcccaact tccctggtga gcagctcctt ttcttccgct cacagttacc atcttctggt
6421 gggcgatcca atgggatttt agattgcctg gtcccccaag aatgggtcca gcacttctac
6481 caagaatcag cccccgccca aacccaggtg gctctggtta gatatgtcaa ccctgacact
6541 ggtagagtgt tgtttgaggc caagctgcac aagttaggtt ttatgactat agctaagaat
6601 ggtgactctc caataactgt ccccccaaat ggatacttta ggtttgaatc ttgggtgaac
6661 ccattttata cacttgcccc catgggaact gggaatgggc gtagaagagt tcaataatgg
6721 ctggtgcttt tatagcagga ttagctggtg atatactcac aaatactgta gggtctctag
6781 ttaatgcagg ggctaatgct attaatcaaa aagttgattt tgaaaataat aaatacttgc
6841 aaaatgcttc cttcaatcat gataaggaaa tgttaaatgc acagattgag tcaacaaaga
6901 gattacaggc tgacatgatt gctatcaaac agggggtttt gaccgctggc ggcttttccc
6961 ccactgatgc agctcgcggg gcaatcaacg cccccatgac aaaagtcctg gattggaatg
7021 gaacaaggta ctgggcacca aatgccacct ctacaacttc gatgtcgggt ggcttcacaa
7081 accaggctgt gcacagaacc acgccaaatt ttaaaatgaa ccaggccccc agatccacac
7141 ccagcagtgg gtcttcagtg aggtcactct caacccaagt cactagtctg agctcacact
7201 cgtctgggtc gtctcgatcc agcgggccta cagttgctag ctcattacca tcctctaaca
7261 ggactaggga ctgggtcaat cagcaaaact tcaatttgga accacacttg cctgggtcac
7321 ttaggacggc ttttgtcact ccaccatcta gtacagcctc tagttcaggc actgtctcaa
7381 ccgtgcccaa aaatgttttg gactcctgga catctgcgtt taacacgcgc agacagccgc
7441 tattcgcaca ccttcgtaga aggggggagt caaatgttta gtgaaaaggt t
//