Typing tool
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Typing tool
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Complete norovirus genomes
| OM386672 | GII.6 | |
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| GII.P7 |
ORF1: 1..5002
ORF2: 4983..6635
ORF3: 6635..7414
LOCUS OM386672 7443 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS493 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM386672
VERSION OM386672.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7443)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7443)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7443
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS493"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5002
/gene="ORF1"
CDS <1..5002
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP38441.1"
/translation="AGAFSNIKVGFKKMLGAVPKGTKAPSSDQHCPTVKIGPKTLTVP
PEPPNGEDTVQFDAKSETVIGLPDLTTVQNEHENTPYTVPPLSEREHRPATEPLPGTI
LEMWDGEFYHYSVYVSGGKALGVHKPPAAISLATIELTPISLYWRPVYTPNYLVCPDT
LKGLAGEKFPYTAFSNNCYNFCCWVLELNDTWLSRRSISRTTGFFKPYQSWNRKPLPT
VDDGKIKKVANAILCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFAGIVETVILM
AELFNVFWTPPDVSNFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRM
LSSAASTLRACKDLGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNN
HLTTLLKDKDSLTAFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARIAAARSLLHK
AKEEMFSRTRPVVVMISGRPGIGKTHMARHLAKNIANTMSGDQRVGLVPRNGVDHWDA
YRGERVVLWDDYGMGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTNL
VNPAPLDYVNFEACSRRIDFLVYAESPEIEKVKRDFPGQPDMWKDYFKQDFSHIKLTL
APQGGFDKNGNTPHGKGTMRSLTQGSLTARVAGLVHERKDEFQLQGNDLQTYNFDTNR
VSAFRKLAADNKYGIMETMRVGAALKNVKTLEDLKVALRDVKFNECEIIYRNSKYRVS
SNGKGSVSVDKVEDHTSQTANEVGSALLRLRQARARYYVSCFQDLVYTLIQVAGASFV
VNRISKRFCWERWVKPTETQEASEPEKEVAQGRWEIEPKDTEPEGKKGKNKKGRGKKH
TAFSSKGLSDEEYDEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEE
AKIRQRIFRPTRKQRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERL
DFEAPPSVWSRIVPLGTGWGFWVSSNLLITTTHVLPRGVKELFGVEVKQIQIHKSGEF
CRFRFPRPIRPDVTGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRT
VGGQMGMLLTGANAKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICAT
QGQDGEAVLEGNENLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGG
KDPRVEKGPSLQQVMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQTIDPAKPWTY
SQACASLDKTTSSGSPHHVKKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAA
LKDELVKTDKIYKKIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMN
EDGPIIFDKHSKYRYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLL
APSQLDVGDFVISVQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCF
SFYGDDEIVSTDINLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSIA
RDPAGWFGKLDQDSILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQF
YKRVSKMVINEIKSGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
mat_peptide <1..910
/gene="ORF1"
/product="p48"
mat_peptide 911..2008
/gene="ORF1"
/product="NTPase"
mat_peptide 2009..2527
/gene="ORF1"
/product="p22"
mat_peptide 2528..2926
/gene="ORF1"
/product="VPg"
mat_peptide 2927..3469
/gene="ORF1"
/product="Pro"
mat_peptide 3470..4999
/gene="ORF1"
/product="RdRp"
gene 4983..6635
/gene="ORF2"
CDS 4983..6635
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38442.1"
/translation="MKMASNDAAPSNDGAANLVPEANSEVMALEPVVGASIAAPVVGQ
QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
MQVQVVLAGNAFTAGKIIFAAVPPHFPVDNISAAQITMCPHVIVDVRQLEPVLLPLPD
IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
VESKTKPFTLPILTLGELSNSRFPAAIDMLYTDPNESIVVQPQNGRCTLDGTLQGTTQ
LVPTQICAFRGTLISQTARAADSTDSPQRARNHPLHVQVKNLDGTQYDPTDDIPAVLG
AIDFKGTVFGVASQRDVSGTQEQGHYATRAHEAHIDTTDPKYAPKLGTILIKSESNDF
NTNQPIRFTPVGMGDNNWRQWELPDYSGRLTLNMNLAPAVSPSFPGERILFFRSIVPS
AGGYGSGYIDCLIPQEWVQHFYQEAAPSQSAVALVRYVNPDTGRNIFEAKLHREGFLT
VANSGNNPIVVPPNGYFRFEAWVNQFYTLAPMGSGQGRRRAQ"
gene 6635..7414
/gene="ORF3"
CDS 6635..7414
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38443.1"
/translation="MAGAFFAGLAGDVVSNGIGSLINAGANAVNQKVEYDFNKQLQMA
SFKHDKEMLQSQVLATKQLQQEMMNIKQGMLAAGGFSPADAARGAVNAPMTKILDWNG
TRYWAPNSMKTTSYSGQFSSSPVHRSPAPLQHTASPKSKLQSDSASVYSSPSTVSTQS
THSTVLSAGTGSSRSTPTSTATSTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSK
ASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN
1 ggctggtgca ttctccaaca tcaaagttgg atttaagaaa atgctgggtg ccgtacctaa
61 gggtactaaa gcacccagca gtgaccagca ctgcccaaca gttaagatcg ggcccaaaac
121 actaacagtc ccccctgaac ccccaaatgg tgaagacact gtacaatttg atgcaaaatc
181 ggaaactgta attgggctac cggacttgac gacagtgcaa aatgaacatg aaaacacccc
241 atacactgtc cctccactga gtgagaggga acatagacca gccactgagc cgcttcctgg
301 cacaatactg gagatgtggg atggtgaatt ttaccactac tctgtgtacg tcagcggcgg
361 caaagctctg ggggtccaca agcctccggc agccataagc ctcgcgacga tagagctcac
421 ccctatatct ctatactgga ggcctgttta cacccccaac tacctagtct gcccagacac
481 actgaaaggt ctcgccggtg aaaagttccc ctacacggcc ttcagcaaca attgctacaa
541 cttctgctgt tgggtgcttg agcttaatga cacgtggctt agcaggagaa gcatttccag
601 aaccaccggc ttcttcaaac cgtaccagtc ttggaatagg aaacctctcc caaccgttga
661 tgatggaaag attaaaaagg tggccaacgc gatcctttgt gcactcggtt cgctgttctc
721 aaaaccaatc aaggacctgc taggcaagct caaaccattg aacttactgc atctgctcgc
781 gtcgtgtgat tggacgtttg caggtatagt agagacagtt atcttaatgg cagaactctt
841 caatgtcttt tggaccccgc cagacgtctc taatttcata gcctccctga taggtgattt
901 tgaattgcag gggcctgagg acttggcggt ggagcttgtt cctgtggtca tgggtggcat
961 aggaatggtt ctcggcttca ccgctgagaa gataggtcgc atgctgtcgt ccgctgcatc
1021 aacactgcgg gcgtgtaaag acttagggaa ctatgccctt gacatactca agttggtcat
1081 gaaatggttc ttcccaaaga aagaggagaa agccgagatg gaaaccttga gggcgattga
1141 ggatgccgtc ctagacatgg aggccatagg taacaaccac ctcacgactc tcctcaagga
1201 caaagacagt ctcacggcct tcatgaagac cttggacctg gaagaagaga aggcaaggaa
1261 actgtccacc aaatcatcct cgccggacat cgtcggcact atcaacgcca tactggctag
1321 gatagctgcc gctagatccc tcctgcacaa ggccaaagag gagatgttta gcaggaccag
1381 accagtggtt gttatgatct caggcaggcc tggcattggc aaaactcata tggcaagaca
1441 tctggctaag aacatcgcca acaccatgag tggtgaccag agagtcgggc tcgttccgcg
1501 caatggggtt gaccactggg acgcttacag gggagagagg gtggtcttgt gggatgatta
1561 tggaatgggg aaccctgtca aggatgcttt aacactgcag gaacttgctg atacatgccc
1621 agtcactcta aactgtgaca ggatcgagaa caagggaaag atgttcgata gtgatgtcat
1681 cataatcacg accaacctag tcaatcctgc acctctcgat tatgtgaact tcgaggcgtg
1741 ctctagaaga attgatttct tggtctatgc agagtcacca gaaattgaga aggttaaaag
1801 agatttccct ggtcaacctg atatgtggaa agactatttc aagcaagatt tttcccatat
1861 aaagctaacc ctagcccccc aaggtggatt tgacaagaat ggcaacaccc cgcacggtaa
1921 gggcaccatg cgatccctca cccaggggtc cctgaccgca agggttgcag gcctcgttca
1981 tgagaggaag gatgagttcc agttacaagg gaatgacctc cagacataca actttgacac
2041 caacagggtc tctgcgttca gaaaactggc tgcagacaac aagtatggaa tcatggaaac
2101 aatgagagtg ggtgcagcgc tcaaaaatgt caaaactctg gaggatctga aagtcgcctt
2161 gagagatgtg aagtttaatg aatgtgaaat aatttacagg aactccaagt accgggtctc
2221 ttccaacggt aagggctctg tttctgttga caaagttgag gaccacacat ctcagaccgc
2281 aaatgaagtg ggctcagcac tcctcagact caggcaagca agggctagat attatgtcag
2341 ctgcttccaa gacctcgtct acactcttat acaggttgct ggggcgtcat tcgttgtcaa
2401 caggatctcc aaaaggttct gttgggaaag gtgggttaaa ccgaccgaaa cccaagaagc
2461 gagtgaaccc gaaaaggaag tggcccaagg aaggtgggag atagagccca aggacacaga
2521 accagagggc aagaagggca agaacaagaa agggagaggc aagaaacaca cagccttctc
2581 cagcaaaggc ctaagtgatg aagagtatga tgagttcaag agaatcagag aagagaggaa
2641 cggaaaatac tccattgagg aatacctgca agaccgggac cgctactatg aagaagtggc
2701 agttgcccgg gcaacagaag aggacttttg tgaagaagaa gaagccaaga taagacaaag
2761 aatcttccgc ccaacaagga agcaaagaaa agaggaaagg ggggtacttg gtttagttac
2821 tggctcagat atcaggaaga ggagaccaga tgatttccag ccaaaaggca acctatgggc
2881 agatgacact aggagtgtgg actacaatga gagacttgac tttgaggctc caccaagcgt
2941 ctggtcaaga atagtcccat tgggcactgg ttggggcttc tgggtctcat caaacctcct
3001 gatcacaaca acacatgtcc tgcccagggg ggtcaaggag ctctttgggg tcgaggtcaa
3061 acaaattcaa atccacaagt ctggggagtt ctgtaggttt aggttcccaa gaccaatcag
3121 accagatgtc acaggactcg tgttggagga aggtgctcct gagggcactg tctgttccat
3181 actcgttaag aggcccacag gtgagatgat ccccctagca gtgaggatgg gcacgcatgc
3241 atccatgaaa atacagggta ggaccgtcgg tggtcagatg ggaatgcttc tcacaggggc
3301 aaatgcaaag aacatggatc ttggcactgg tcctggtgac tgcggttgtc cttacatcta
3361 caaacgtggc aacgacatag ttgtcgcggg tgtccacacc gcagcagccc gggggggcaa
3421 cactgttatt tgtgccactc aggggcaaga tggagaagca gtccttgagg gaaatgaaaa
3481 ccttggcacc tattgtggag ctccaattct gggccctggt aaagcgccta aactcagcac
3541 aaaaaccaaa ttttggcgct catccccaga tgccctacct cctggcacgt atgaacctgc
3601 ttatctaggg ggtaaggatc ccagagttga aaaagggccc tctctacaac aagttatgag
3661 agaccagctg aaaccattca cagagcccag gggcaaacca cctagaccag cagttttaga
3721 agaggccaaa aagacagtga tgaatgttct agaacagacc attgaccctg ctaaaccatg
3781 gacttactca caagcatgtg cttcactgga caagaccact tctagtggaa gcccccacca
3841 tgttaagaaa aatgaccact ggaatgggga gtctttcact ggtcccctag cggaccaggc
3901 atccaaagcc aacctcatgt atgaacaggc aaaacatgtg cagcccgtgt acacggccgc
3961 gctcaaagat gagcttgtta agactgataa gatctacaag aagattaaga agagactcct
4021 gtgggggtca gaccttggta cgatgatcag gtgcgccagg gcttttggcg gccttatgga
4081 tagtatgaaa gcaagttgta tagccctccc atgcagggtg gggatgaaca tgaatgagga
4141 tggccccatc atatttgaca aacactccaa gtataggtac cactatgatg ctgactactc
4201 taggtgggac tcaacccagc aaaggagcat tctttccgcc gccatggagg tgatggtaag
4261 gttctctgct gaaccagaat tggcacaagt ggtcgcagag gaccttttgg cgcccagcca
4321 gctagatgtt ggcgactttg tcatctcagt ccaggaggga ctgccatctg gagttccatg
4381 tacgtcacag tggaattcaa tagcgcactg gattctaact ctgagcgcaa tggcagaagt
4441 gtcaggtctc tcaccagacg tagtccaagc ccactcctgt ttttcatttt atggtgacga
4501 tgagatcgtc agcactgaca tcaaccttga ccccatgaaa ctgacacaga aactcaggga
4561 gtatggtctg gtccccaccc ggcctgacaa gactgaaggc cccctcgtta taactgaaga
4621 cctaaccggc ctgactttcc tgcgcagatc gatcgcacgg gatccagctg gatggtttgg
4681 taaattggat caagactcaa tcctcaggca attatactgg acaagggggc ccaatcatga
4741 aaacccatac gagagcatgg ttccccactc ccagcgagct actcagctca tggcccttct
4801 tggtgaggct tcactgcatg gtccccagtt ttacaagaga gtcagcaaga tggtcatcaa
4861 tgagattaag agtggtggtc tggagtttta tgtgcccaga caagaggcca tgtttaggtg
4921 gatgagattc tctgacctca gcacatggga gggcgatcgc aatcttgctc ccgagggtgt
4981 gaatgaagat ggcgtcgaat gacgccgctc catcgaatga tggtgctgcc aacctcgtac
5041 cagaggccaa cagtgaggtt atggcacttg aaccggtggt gggagcttca atcgcagctc
5101 ctgttgtcgg tcagcagaat ataattgacc cctggattag agaaaatttt gttcaagcac
5161 cacagggcga gttcactgtt tcaccaagga actcgcccgg tgagatgctt ctaaatcttg
5221 aattgggccc agaacttaac ccctatttga gtcatttgtc ccgcatgtac aatgggtatg
5281 ctggtggcat gcaggttcag gtggtcctag ctgggaatgc gttcacagct gggaagatca
5341 tctttgccgc tgtgccaccg catttccctg tggataatat tagtgcagcc caaataacta
5401 tgtgccccca tgtgattgtt gatgtgagac agcttgaacc agtgctttta cccctccccg
5461 acataaggaa caggttcttc cattacaacc aagaaaacac cccccggatg agactggtgg
5521 ccatgctcta cacgcctcta agggctaatt ccggagagga tgtgttcact gtgtcttgca
5581 gagttctgac tcgccctgct ccagattttg aatttacatt cttagttcca ccaactgttg
5641 aatcaaaaac aaaacccttt actctaccta ttctaactct tggtgagtta tctaattccc
5701 gtttccctgc tgctatagat atgctttata ctgatcccaa tgaatcaata gttgtgcagc
5761 cccaaaatgg tagatgcacc cttgatggca cgttgcaagg tacaacacaa ttggtcccaa
5821 cacagatttg tgcttttaga ggtaccctga tcagccagac tgcgagagcg gccgattcaa
5881 cagattcccc ccagagagcc cgtaatcacc cattgcacgt ccaggtcaag aacctagatg
5941 gcacacagta tgatccaaca gatgacatcc ctgcagtcct gggggccatt gacttcaaag
6001 gtacagtgtt cggagtggca agccagaggg acgtctccgg aacacaagag cagggccatt
6061 acgccacccg ggctcatgaa gcacacattg acacaactga cccaaagtat gcacctaaat
6121 taggcacaat tcttatcaaa tctgagtcta atgatttcaa cacaaatcag cccattaggt
6181 ttactccagt gggtatgggt gacaacaact ggagacagtg ggaattgcct gactactctg
6241 gtagattgac tctaaacatg aaccttgccc ctgctgtttc cccatccttc cctggagaac
6301 gaatcctttt cttcaggtct atagtaccat cagctggagg ctacgggtct ggctatatag
6361 actgtctcat accccaggaa tgggtgcaac acttctacca ggaggcagca ccttcacagt
6421 ctgctgttgc actggttagg tatgtcaacc ccgacaccgg gcgtaacatc tttgaggcca
6481 agttgcacag agaagggttc ctcaccgtgg ccaattctgg aaataatcct attgtggttc
6541 cccctaatgg ttattttaga tttgaagctt gggttaatca attctacaca cttgccccca
6601 tgggatctgg acaggggcgc agaagagctc agtaatggct ggagccttct tcgcagggtt
6661 agcaggtgat gtcgtgtcga acggcatcgg ttccctcatt aatgcaggtg ctaatgcagt
6721 caatcaaaag gttgagtatg attttaacaa gcaacttcag atggcatcat ttaagcatga
6781 taaggagatg ttacaatcac aggtgttggc aactaaacaa ctgcagcagg aaatgatgaa
6841 cataaagcag gggatgttag ctgctggcgg cttttcccct gcggacgctg ctagaggggc
6901 tgttaacgct ccaatgacaa agatactgga ctggaatggc acaagatatt gggcacctaa
6961 cagcatgaaa accacaagct attcaggaca attctctagc agccccgtcc acaggtctcc
7021 tgctcccctc cagcacaccg cctcaccaaa gagtaaattg caaagtgatt ctgctagtgt
7081 gtatagctcc ccttctactg tttctacaca atcaactcat tcaacagtgt tgtctgcagg
7141 aactgggtcg tccagatcca cccccacgtc cacagcaacc tccaccctgt ctaggaccag
7201 cgactgggtt aggggacaga atgaaaggct tagcccgttt atggatggtg ctctccaaac
7261 cacttttgtc acaccaccat cgagcaaagc ttcatcaaat gggacagtct cgaccgtgcc
7321 caaagctgtt ttggactcct ggacccctat gttcaataca cataggcagc ctctcttcgc
7381 ccatctgcgt aggcgagggg agtcacaaat ttagtgaaaa gagtgattag gttttctttc
7441 cct
//