Typing tool
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Typing tool
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Complete norovirus genomes
| OM386670 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5084
ORF2: 5065..6687
ORF3: 6687..7493
LOCUS OM386670 7519 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS578 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM386670
VERSION OM386670.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7519)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7519)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7519
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS578"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5084
/gene="ORF1"
CDS <1..5084
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP38438.1"
/translation="DASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPK
EIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKNGVSGLPELTTVRQPEETNTAF
SVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVEL
APLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRM
IQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNI
LNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELV
PIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEAN
ELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPD
IVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAA
SLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNC
DRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFP
GQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHE
RLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQA
LKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRY
YVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDD
EEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEE
YLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIR
KRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITS
THVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLL
IKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYI
YKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPK
LSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPR
PNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFT
GKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRC
ARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRD
VLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSI
AHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKP
TRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPF
ETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWM
RFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..974
/gene="ORF1"
/product="p48"
mat_peptide 975..2072
/gene="ORF1"
/product="NTPase"
mat_peptide 2073..2609
/gene="ORF1"
/product="p22"
mat_peptide 2610..3008
/gene="ORF1"
/product="VPg"
mat_peptide 3009..3551
/gene="ORF1"
/product="Pro"
mat_peptide 3552..5081
/gene="ORF1"
/product="RdRp"
gene 5065..6687
/gene="ORF2"
CDS 5065..6687
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38439.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6687..7493
/gene="ORF3"
CDS 6687..7493
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38440.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 acgacgcttc cgctgccgct gttgccaaca gcaacaacga catcgcaaaa tcttcaagtg
61 acggtgtgtt ttctaacatg gctgtcactt ttaagcgggc cctcggggcg cggcctaaac
121 agccgccccc gaaggaaata ccacccagac ccccgcgacc acccacacca gaattggtca
181 aaaagatccc tcctccccca cccaacgggg aggatgaact agtggtctct tacaacgcca
241 aaaatggcgt ttccggactg cctgagctca ccactgtcag acaaccggaa gaaaccaaca
301 cggcgttcag tgtcccccca ctcaaccaaa gggagagcag ggacgccaag gagccactaa
361 ctgggacaat cattgaaatg tgggatggag aaatctacca ttacggcctg tacgtggaac
421 gaggtcttat acttggtgtg cacaagccac cagcagccat cagcctcgct aaggtcgagc
481 tggcaccact ctctttgttc tggagacctg tatacacccc ccagtacctt atctctccag
541 acactcttag gagattacat ggagagtcat tcccctacac tgcatttgac aacaattgct
601 acgccttttg ttgttgggta ttagacctaa acgactcatg gctaagcagg agaatgattc
661 agagaacaac aggcttcttt aggccgtacc aggattggaa caggaaaccc ctccccacta
721 tggatgattc caaattaaag aaggtagcca acatattttt gtgcactttg tcttcactat
781 tcaccaggcc catcaaggac ataataggga agttgaaacc tctcaacatc cttaatattc
841 tggctacatg tgattggacc ttcgcaggca tagtggaatc cttaatactc ttggcagaac
901 tctttggagt tttctggaca cccccagatg tgtctgcgat gatcgccccc ttgctaggtg
961 attatgaact gcaaggaccc gaggaccttg cagtggaact ggtcccaata gtgatgggag
1021 ggataggttt ggttctagga tttaccaaag agaagatcgg aaagatgctg tcatcagctg
1081 catccacttt aagagcttgt aaagaccttg gtgcatacgg actggaaatc ttaaaattgg
1141 tcatgaagtg gttcttccca aagaaagagg aagcaaatga actggctatg gtgagatcca
1201 tcgaggatgc agtactagac ctcgaggcaa ttgaaaacaa ccacatgacc accctgctca
1261 aagacaaaga cagcttgaca acctacatga gaacccttga ccttgaggag gagaaagcca
1321 gaaaactctc aaccaaatct gcttcacccg atattgtggg cacaatcaac tctcttctgg
1381 caagaatcgc tgctgcacgc tccctagtgc atcgggcgaa agaagagctc tccagcaggc
1441 cgagacctgt cgttgtaatg atatcgggaa gaccagggat agggaaaact caccttgcca
1501 gggagctggc caagaagatc gcggcctccc tcacagggga ccagcgtgtg ggccttatcc
1561 cacgcaatgg tgtcgaccac tgggacgcat acaagggcga aagggttgtc ctatgggacg
1621 actatggaat gagcaacccc atccatgatg cccttaggtt gcaggagctt gctgacactt
1681 gccccctcac gctaaattgt gacagaattg agaacaaagg aaaagtcttt gacagtgacg
1741 ccataattat caccaccaac ctggccaacc cagcaccact ggattatgtc aactttgaag
1801 cgtgctcgag acgcattgat ttcctcgtgt acgcagaagc ccctgaggtg gagaaggcaa
1861 agcgcgactt cccaggtcaa cctgacatgt ggaagaacgc tttcagtcct gacttctcac
1921 acataaaact gtcattggct ccacagggtg gttttgacaa gaacggcaac accccgcatg
1981 gaaaaggggt catgaagacc ctcaccactg gctccctcat cgcccgagca tcagggttac
2041 tccatgagag gctagatgaa tatgaattgc aaggcccagc cctcaccact ttcaactttg
2101 accgcaacaa gatacttgct tttagacagc tcgctgctga aaacaagtat gggctgatgg
2161 acacaatgag agttggaaaa cagctcaagg atgtcaagac tatgtcagac ctcaaacagg
2221 cgctcaagaa catcgcgatc aagaagtgcc agatagtgta caatggtggc acctacacac
2281 ttgaggctga tggcaagggc agtgtgaaag ttgacaaagt gcaaagtgcc actgtgcaga
2341 ccaacaatga actagccggt gccctacacc acctaagatg cgctagaatc agatactatg
2401 ttaagtgcgt ccaggaggca ctgtattcca tcatccaaat cgctggggct gcattcgtca
2461 ccacgcgcat cgctaagcgc atgaatatac agaatctctg gtccaagcca caggtggaag
2521 acacagaaga gatggccaac aaagatggtt gcctaaaacc caaagatgat gaagagtttg
2581 tcgtttcatc cgacgacatc aaaactgagg gcaagaaagg gaagaacaag tccggccgcg
2641 gcaagaagca cacagccttt tcaagtaaag ggctcagtga tgaggagtat gatgagtaca
2701 agagaatcag agaagaaagg aatggtaagt actccataga agagtacctt caggacagag
2761 acaggtacta cgaggaggtg gccattgcca gggcaaccga agaggacttc tgtgaagagg
2821 aggaggccaa aatccggcag aggattttca gaccaacaag gaaacaacgc aaagaagaga
2881 gggcttctct cggcttggtc acaggctctg aaatcaggaa gagaaaccca gaagacttca
2941 aacccaaggg aaagctgtgg gctgatgacg acagaagtgt tgactacaat gagaaactca
3001 actttgaggc cccaccaagc atctggtcgc ggatagtcaa ctttggttca ggctggggct
3061 tctgggtctc ccccagtctg tttataacat caacccatgt cataccccaa ggtgcaaagg
3121 agttcttcgg agtccctatc aagcaaatcc agatacacaa gtcaggtgaa ttctgccgat
3181 tgagattccc aaagccaatc agaaccgatg tgacgggcat gattctagaa gaaggtgcgc
3241 ccgaggggac cgtggccaca ctgctcatca agagaccaac tggagagctc atgcctctgg
3301 cagccagaat ggggacccat gcaaccatga aaattcaggg gcgcacagtt ggagggcaaa
3361 tgggtatgct cctgacagga tccaacgcca agagtatgga cctaggcaca acaccaggcg
3421 actgcggctg cccctacatc tacaagaggg ggaatgacta cgtggtcata ggggtccata
3481 cggctgctgc ccgtggagga aacactgtca tatgtgccac ccagggaagt gagggagagg
3541 ccacacttga aggaggtgac agtaaaggga catactgtgg cgcaccaatc ttgggcccag
3601 ggagcgctcc gaagctcagc accaagacca agttttggag atcatccaca acaccactcc
3661 cacctggcac ctacgaacca gcctacctcg gtggcaaaga ccctagagtc aaaggtggcc
3721 cttcattgca acaagttatg agggaccagc tgaagccatt cacagaaccc agaggcaaac
3781 caccaagacc aaatgtgttg gaagctgcca agaaaaccat catcaatgtc cttgagcaaa
3841 caattgatcc accccaaaaa tggtcatttg cgcaagcttg cgcatccctt gacaaaacca
3901 cctccagcgg ccacccgcac cacatgcgga aaaacgactg ttggaatggg gagtccttca
3961 caggaaagtt ggctgaccaa gcctccaagg ccaacctaat gtttgaagag ggaaagaaca
4021 tgactccagt ctacacaggt gcacttaaag atgagttggt aaagaccgat aaagtttatg
4081 gtaaggtcaa gaagaggctt ctatggggtt cagatctggc gaccatgata cggtgcgccc
4141 gagcttttgg aggcctcatg gatgaactca aggcacactg tgtcacactc cctgtcagag
4201 ttggtatgaa catgaatgag gatggcccca tcatcttcga gaagcactcc agatatagat
4261 atcattatga tgctgactat tcccggtggg actcaacaca acaaagggat gtgctagcag
4321 cagcactaga aatcatggtt aagttctctc cagaaccaca cctggcccag atagttgcag
4381 aagacctcct ttcccctagc gtgatggatg tgggtgactt tcaaatatca ataagtgagg
4441 gtctcccctc tggggtgcct tgcacctctc agtggaattc catcgcccac tggctcctca
4501 ctctgtgtgc actctctgaa gtcacggacc tgtcccctga tatcattcag gccaactccc
4561 ttttctcctt ctatggtgat gatgagattg taagcacaga cataaagttg gacccagaga
4621 ggctaacagc aaaactcaag gagtacgggc tgaaaccaac ccgccccgac aaaactgaag
4681 gacccctcgt catctctgaa gacctggatg gtctgacatt cctccggaga actgtgaccc
4741 gtgatccagc tggctggttt ggaaaattgg aacaaagttc aattcttagg caaatgtact
4801 ggaccagggg tcccaaccat gaagacccat ttgaaacaat gataccacac tcccaaagac
4861 ccatacaact gatgtccttg ctgggcgagg ctgcactcca cggcccggca ttctacagca
4921 aaatcagcaa attagtcatt gcagagttga aggaaggtgg catggatttt tacgtaccca
4981 gacaagagcc aatgttcagg tggatgagat tctcagatct gagcacgtgg gagggcgatc
5041 gcaatctggc tcccagtttt gtgaatgaag atggcgtcga gtgacgtcaa cccatctgat
5101 gggtccgcag ccaacctcgt cccagaggtc aacaatgagg ttatggctct ggagcccgtt
5161 gttggtgccg ccattgcggc acctgtagcg ggccaacaaa atgtaattga cccctggatt
5221 agaaacaatt ttgtacaagc ccctggtgga gagtttacag tatcccctag aaacgctcca
5281 ggtgaaatac tatggagcgc gcccttgggc cctgatctaa atccctactt gtctcatttg
5341 gccagaatgt acaatggtta tgcaggtggt tttgaagtgc aggtaattct cgcggggaac
5401 gcgttcaccg ccgggaaggt catatttgca gcagtcccac caaatttccc aactgaaggc
5461 ttgagcccca gccaggtcac tatgttcccc catatagtag tagatgttag gcaactagaa
5521 cctgtgttga ttcccttacc cgatgttagg aataatttct atcattataa tcaatcaaat
5581 gatcccacca tcaagttgat agcaatgttg tatacaccac ttagggctaa taatgctggg
5641 gatgatgtct tcacagtctc ttgccgagtt ctcacgagac catcccccga ttttgacttc
5701 atatttctag tgccacccac agttgagtca agaactaaac cattctctgt cccagtttta
5761 actgttgagg agatgaccaa ttcaagattc cccattcctt tggaaaagtt gttcacgggt
5821 cccagcagtg cctttgttgt ccaaccacaa aacggtaggt gcacgactga tggcgtgctc
5881 ctaggcacca cccaactgtc tcctgtcaac atctgcacct ttagaggaga tgtcacccat
5941 atcacaggta gtcataacta tacaatgaat ttggcttctc aaaattggag taactacgac
6001 ccaacagaag aaatcccagc ccctctaggg actccagact ttgtggggaa gattcaaggc
6061 atgcttaccc aaaccacaag gacagatggc tcaacacgcg gccacaaagc cacagtgtac
6121 actgggagcg ccgactttgc tccaaaactg ggtagagttc aatttgaaac tgacacaaac
6181 aatgattttg aagctaacca aaacacaaag ttcaccccag ttggtgtcat ccaagatggt
6241 ggcaccaccc atcgaaatga accccaacag tgggtactcc caagttactc aggcaggaac
6301 actcctaatg tgcatctggc ccccgctgtg gcccccactt ttccgggtga gcaactcctc
6361 ttctttagat ccaccatgcc cggatgcagt gggtacccca acatggattt ggattgtctg
6421 ctcccccagg aatgggtgca gtacttctac caggaggcag ccccagcaca atctgatgtg
6481 gctctgctaa gatttgtgaa tccagacaca ggtagggttt tgtttgaatg taagcttcat
6541 aaatcaggct atgttacagt ggctcacact ggccaacatg atttggttat cccccccaat
6601 ggttatttta ggtttgattc ctgggtcaac cagttttaca cgcttgcccc catgggaaat
6661 ggagcggggc gtagacgtgc actataatgg ctggagcttt ctttgctgga ttggcatctg
6721 atgtccttgg ctctggactt ggttccctta tcaatgctgg ggctggggcc atcaaccaaa
6781 aagttgagtt tgaaaataac agaaaattgc aacaagcatc cttccaattt agcagcaatc
6841 tacaacaggc ttcctttcaa catgacaaag agatgctcca agcacaaatt gaggctacca
6901 aaaggttaca acaggaaatg atgaaagtta agcaggcaat gctcctagag ggtgggttct
6961 ctgagacaga tgcagcccgc ggggcaatca acgcccctat gacaaaagcc ttggactgga
7021 gcgggacaag gtactgggct cctgatgcta ggactacaac atacaatgca ggccgctttt
7081 ccacccccca accatcaggg gcgctgccag gaagagctaa ttttagggat gctgtccctg
7141 ctcggggttc ctctagtaag tcttctaatt cttctactgc tacttctgtg tattcaaatc
7201 aaactacttc aacgagactt ggttctacag ctggttctgg taccagtgtc tcgagcttcc
7261 cgtcaactgc aaggactagg agctgggttg aggaccaaag taggaatttg tcacctttca
7321 tgaggggggc ccacaacata tcgtttgtca ccccaccatc tagcaggtcc tctagccaag
7381 gcacagtctc aaccgtgcct aaagagattt tggactcctg gactggcgct ttcaacacgc
7441 gcaggcagcc actcttcgct cacattcgta agcgagggga gtcacgggtg taatgtgaaa
7501 agacaaaatt gattatctt
//