Typing tool
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Typing tool
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Complete norovirus genomes
| OM373654 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5047
ORF2: 5028..6650
ORF3: 6650..7456
LOCUS OM373654 7468 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS480 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373654
VERSION OM373654.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7468)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7468)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7468
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS480"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5047
/gene="ORF1"
CDS <1..5047
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP38396.1"
/translation="DIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPPRPPTP
ELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRD
AKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFWRPVYT
PQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQ
DWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDWTFA
GIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGLVLG
FTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAV
LDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARI
AAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIP
RNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDS
DAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSP
DFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPAL
TTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKCQIV
YNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSI
IQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDDIKT
EGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEV
AIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGK
LWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFF
GVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLA
ARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGV
HTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSST
TPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTII
NVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANL
MFEEGKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELK
AHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKF
SPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSE
VTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTEGPLVI
SEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQ
LMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDR
NLAPSFVNEDGVE"
mat_peptide <1..937
/gene="ORF1"
/product="p48"
mat_peptide 938..2035
/gene="ORF1"
/product="NTPase"
mat_peptide 2036..2572
/gene="ORF1"
/product="p22"
mat_peptide 2573..2971
/gene="ORF1"
/product="VPg"
mat_peptide 2972..3514
/gene="ORF1"
/product="Pro"
mat_peptide 3515..5044
/gene="ORF1"
/product="RdRp"
gene 5028..6650
/gene="ORF2"
CDS 5028..6650
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38397.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGIGAGRRRAL"
gene 6650..7456
/gene="ORF3"
CDS 6650..7456
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38398.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cgacatcgca aaatcttcaa gtgacggtgt gttttctaac atggctgtca cttttaagcg
61 ggccctcggg gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccgcg
121 accacccaca ccagaattgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga
181 actagtggtc tcttataacg ccaaagatgg cgtttccgga ctgcctgagc tcaccactgt
241 cagacaaccg gaagaaacca acacggcgtt cagtgtcccc cctctcaacc aaagggagag
301 cagggacgcc aaggagccac taactggaac aatcattgaa atgtgggatg gagaaatcta
361 ccattacggc ctgtacgtgg aacgaggtct tatacttggt gtgcacaagc caccggcagc
421 catcagcctc gctaaggtcg agctggcacc gctctctttg ttctggagac ctgtatacac
481 cccccaatac cttatctctc cagacactct taggagatta catggagagt cattccccta
541 cactgcattt gacaacaatt gctacgcctt ttgttgttgg gtattagacc taaacgactc
601 atggctaagc aggagaatga ttcagagaac aacaggcttc ttcaggccgt accaggattg
661 gaacaggaaa ccccttccca ctatggatga ttccaaatta aagaaggtag ccaacatatt
721 cttgtgcact ttgtcttcac tattcaccag gcctattaag gacataatag ggaagttgaa
781 acctctcaac atccttaata ttctggctac atgtgattgg accttcgcag gcatagtgga
841 atccttaata ctcttggcag aactctttgg agttttctgg acacccccag atgtgtctgc
901 gatgatcgcc cccttgctag gtgattatga actgcaagga cccgaggacc ttgcagtgga
961 actggtccca atagtgatgg gggggatagg tttggtgcta ggatttacca aagagaagat
1021 cggaaagatg ctgtcatccg ctgcatccac tttaagagct tgtaaagacc ttggtgcata
1081 cggactggaa atcttaaaat tggtcatgaa gtggttcttc ccaaagaaag aggaagcaaa
1141 tgaactggct atggtgagat ccatcgagga tgcagtacta gacctcgagg caattgaaaa
1201 caaccacatg accaccctgc tcaaagacaa agacagcttg acaacctaca tgaggaccct
1261 tgatcttgag gaggagaaag ccagaaaact ctcaaccaaa tctgcttcac ccgatattgt
1321 gggcacaatc aactctcttc tggcaagaat cgctgctgca cgctccctag tgcatcgggc
1381 gaaagaagag ctttccagca ggccgagacc tgtcgttgta atgatatcgg gaagaccagg
1441 gatagggaaa actcaccttg ccagggagct ggccaagaag atcgcggcct ccctcacagg
1501 ggaccagcgt gtgggcctca tcccacgcaa tggtgtcgac cactgggacg catacaaggg
1561 cgaaagggtt gtcctatggg acgactatgg aatgagcaac cccatccatg atgcccttag
1621 gttgcaggag cttgctgaca cttgccccct cacgctaaac tgtgacagaa ttgagaacaa
1681 aggaaaagtc tttgacagtg atgccataat tatcaccacc aacctggcca acccagcacc
1741 actggattat gtcaactttg aagcgtgctc gagacgcatt gatttcctcg tgtacgcaga
1801 agcccctgag gtggagaagg caaagcgcga cttcccaggt caacctgaca tgtggaagaa
1861 cgctttcagt cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga
1921 caagaacggc aacaccccgc atggaaaagg ggtcatgaag accctcacca ctggctccct
1981 catcgcccga gcatcggggt tactccatga gaggctagat gaatatgaat tgcaaggccc
2041 agccctcacc actttcaact ttgaccgcaa caagatactt gcttttagac agcttgctgc
2101 tgaaaacaag tatgggctga tggacacaat gagagttgga aagcagctca aggatgtcaa
2161 gactatgtca gacctcaaac aagcactcaa gaacatcgca atcaagaagt gccagatagt
2221 gtacaatggt ggcacctaca cacttgaggc tgatggcaag ggcagtgtga aagttgacaa
2281 agtgcaaagt gccactgtgc agaccaacaa tgaactagcc ggtgccctac accacctaag
2341 atgcgctaga atcagatact atgttaagtg cgtccaggag gcactgtatt ccatcatcca
2401 aatcgctggg gctgcattcg tcaccacgcg catcgctaag cgcatgaata tacagaatct
2461 ctggtccaag ccacaggtgg aagacacaga agagatggcc aacaaagatg gttgcctaaa
2521 acccaaagat gatgaagagt ttgtcgtttc atccgacgac atcaaaactg agggcaagaa
2581 agggaagaac aagtccggcc gtggcaagaa gcacacagcc ttttcaagta aagggctcag
2641 tgatgaggag tacgatgagt acaagagaat cagagaagaa aggaatggta agtactccat
2701 agaagagtac cttcaggaca gagacaggta ctacgaggag gtggccattg ccagggcaac
2761 cgaagaggac ttctgtgaag aagaagaggc caaaatccgg cagaggattt tcagaccaac
2821 aaggaaacaa cgtaaagaag agagggcttc tctcggcttg gtcacaggct ctgaaatcag
2881 gaagagaaac ccagaagact tcaaacccaa gggaaagctg tgggctgatg acgacagaag
2941 tgttgactac aatgagaaac tcaactttga ggccccacca agcatctggt cgcggatagt
3001 caactttggt tcaggctggg gcttctgggt ctcccccagt ctgtttataa catcaaccca
3061 tgtcataccc caaggtgcaa aggagttctt cggagtccct atcaagcaaa tccagataca
3121 caagtcaggt gaattctgcc gattgagatt cccaaagcca atcagaaccg atgtgacggg
3181 catgattcta gaagaaggtg cgcccgaggg gaccgtggcc acactgctca tcaagagacc
3241 aactggagag ctcatgcctc tggcagccag aatggggacc catgcaacca tgaaaattca
3301 ggggcgcaca gttggagggc aaatgggtat gctcctgaca ggatccaacg ccaagagtat
3361 ggacctaggc acaacaccag gcgactgcgg ctgcccctac atctacaaga gggggaatga
3421 ctacgtggtc ataggggtcc atacggctgc tgcccgtgga ggaaacactg tcatatgtgc
3481 cacccaggga agtgagggag aggccacact tgaaggaggt gacagtaagg ggacatactg
3541 tggcgcgcca atcttgggcc cagggagcgc tccgaagctc agcaccaaga ctaagttttg
3601 gagatcatcc acaacaccac tcccacctgg cacctacgaa ccagcctacc tcggtggcaa
3661 agaccctaga gtcaaaggtg gcccttcatt gcaacaagtt atgagggacc agctgaagcc
3721 atttacagaa cccagaggca aaccaccaag accaaatgtg ttggaagctg ccaagaaaac
3781 catcatcaat gtccttgagc aaacaattga tccaccccaa aaatggtcat ttgcgcaagc
3841 ttgcgcatcc cttgacaaaa ccacctccag cggccatccg caccacatgc ggaaaaacga
3901 ctgttggaat ggggagtcct tcacaggaaa gttggctgac caagcctcca aggccaacct
3961 aatgtttgaa gagggaaaga acatgactcc aatctacaca ggtgcactta aagatgagtt
4021 ggtaaagacc gataaagttt atggtaaggt caagaagagg cttctatggg gttcagatct
4081 ggcgaccatg atacggtgcg cccgagcttt tggaggcctc atggatgaac tcaaggcaca
4141 ctgtgtcaca ctccctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt
4201 cgagaagcac tccagatata gatatcatta tgatgctgac tattcccggt gggactcaac
4261 acaacaaagg gatgtgctag cagcagcact agaaatcatg gttaagttct ctccagaacc
4321 acacctggcc cagatagttg cagaagacct cctttcccct agcgtgatgg atgtgggtga
4381 ctttcaaata tcaataagtg agggtctccc ctctggggtg ccttgcacct cccagtggaa
4441 ttccatcgcc cactggctcc tcactctgtg tgcactctct gaagtcacgg acctgtcccc
4501 tgatatcatt caggccaact cccttttctc cttctatggt gatgatgaga ttgtaagcac
4561 agacataaag ttggacccag agaggctaac agcaaaactc aaggagtacg gactgaaacc
4621 aacccgtccc gacaaaactg aaggacccct tgtcatctct gaagacctgg atggtctgac
4681 attcctccgg agaactgtga cccgtgatcc agctggctgg tttggaaaat tggaacaaag
4741 ttcaattctt aggcaaatgt actggaccag gggtcccaac catgaagacc catttgaaac
4801 aatgatacca cactcccaga gacccataca attgatgtcc ttgctgggcg aggctgcact
4861 ccacggcccg gcattctaca gcaaaattag caaattagtc attgcagagt tgaaggaagg
4921 tggcatggat ttttacgtac ccagacaaga gccaatgttc agatggatga gattctcaga
4981 tctgagcacg tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
5041 cgagtgacgt caacccatct gatgggtccg cagccaacct cgtcccagag gtcaacaatg
5101 aggttatggc tctggagccc gttgttggtg ccgccatcgc ggcacctgta gcgggccaac
5161 aaaatgtaat tgacccctgg attagaaaca attttgtaca agcccctggt ggagagttta
5221 cagtatcccc tagaaacgct ccaggtgaaa tactatggag cgcgcccttg ggccctgatc
5281 taaatcccta cttgtctcat ttggccagaa tgtacaatgg ttatgcaggt ggttttgaag
5341 tgcaggtaat tctcgcgggg aacgcgttca ccgccgggaa ggtcatattt gcagcagtcc
5401 caccaaattt tccaactgaa ggcttgagcc ccagccaggt cactatgttc ccccatatag
5461 tagtagatgt taggcaacta gaacctgtgt tgattccctt acccgatgtt aggaataatt
5521 tctatcatta caatcaatca aatgacccca ccattaagtt gatagcaatg ttgtatacac
5581 cacttagggc taataatgct ggggatgatg tcttcacagt ttcttgccga gttctcacga
5641 gaccatcccc cgattttgac ttcatatttc tagtgccacc cacagttgag tcaagaacta
5701 aaccattctc tgtcccagtt ttgactgttg aggagatgac caattcaaga ttccccattc
5761 ctttggaaaa gttgttcacg ggtcccagca gtgcctttgt tgtccaacca caaaacggta
5821 ggtgcacgac tgatggcgtg ctcctaggca ccacccaact gtctcctgtc aacatctgca
5881 cctttagagg agatgtcacc catatcacag gtagtcataa ctatacaatg aatttggctt
5941 ctcaaaattg gagcaactac gacccaacag aagaaatccc agcccctcta gggactccag
6001 actttgtggg gaagattcaa ggtatgctta cccaaaccac aaggacagat ggctcaacac
6061 gcggccacaa agccacagtg tacactggga gcgccgactt tgctccaaaa ctgggtagag
6121 ttcaatttga aactgacaca aacaatgatt ttgaagctaa ccaaaacaca aagttcaccc
6181 cagttggtgt catccaagat ggtggcacca cccaccgaaa tgaaccccaa cagtgggtgc
6241 tcccaagtta ctcaggcagg aacactccta atgtgcatct agcccccgct gtggccccaa
6301 cttttccggg tgagcaactc ctcttcttta gatccaccat gcccggatgc agcgggtacc
6361 ccaacatgga tttggattgt ctgctccccc aggaatgggt gcagtacttc taccaggagg
6421 cagccccagc acaatctgat gtggctctgc taagatttgt gaatccagac acaggtaggg
6481 ttttgtttga atgtaagctt cacaaatcag gctatgttac agtggctcac accggccaac
6541 atgatttggt tatccccccc aatggttatt ttaggtttga ttcctgggtc aaccagtttt
6601 acacgcttgc ccccatggga attggagcgg ggcgtagacg tgcactataa tggctggagc
6661 tttctttgct ggattggcat ctgatgtcct tggctctgga cttggttccc ttatcaatgc
6721 tggggctggg gccatcaacc aaaaagttga gtttgaaaat aacagaaaat tgcaacaagc
6781 atccttccaa tttagcagca atctacaaca ggcttccttt caacatgaca aagagatgct
6841 ccaagcacaa attgaggcta ccaaaaggtt acaacaggaa atgatgaaag ttaagcaggc
6901 agtgctccta gagggtgggt tctctgagac agatgcagcc cgcggggcaa ttaacgcccc
6961 tatgacaaaa gccttggact ggagcgggac aaggtactgg gctcctgatg ctaggactac
7021 aacatacaat gcaggccgct tttccacccc ccaaccatcg ggggcgctgc caggaagagc
7081 caattttagg gatgctgtcc ctgctcgggg ttcctctagt aagtcttcta attcttctat
7141 cgctacttct gtgtattcaa atcaaactac ttcaacgaga cttggttcta cagctggttc
7201 tggtaccagt gtctcgagct tcccgacaac tgcaaggact aggagctggg ttgaggacca
7261 aagtaggaat ttgtcacctt tcatgagggg ggcccacaac atatcgtttg tcaccccacc
7321 atctagcagg tcctctagcc aaggcacagt ctcaaccgtg cctaaagaga ttttggactc
7381 ctggactggc gctttcaaca cgcgcaggca gccactcttc gctcacattc gtaagcgagg
7441 ggagtcacgg gtgtaatgtg aaaagaca
//