Typing tool
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Typing tool
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Complete norovirus genomes
| OM373643 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5076
ORF2: 5057..6679
ORF3: 6679..7485
LOCUS OM373643 7496 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS303 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373643
VERSION OM373643.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7496)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7496)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7496
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS303"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5076
/gene="ORF1"
CDS <1..5076
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP38388.1"
/translation="SAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEI
PPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSV
PPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPI
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIV
GTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALK
NIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAKEFFGVPIKQIQIHKSGEFCRMRFPKPIRTDVTGMILEEGAPEGTVATLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPN
VLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCAR
AFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVL
AAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTR
PDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..966
/gene="ORF1"
/product="p48"
mat_peptide 967..2064
/gene="ORF1"
/product="NTPase"
mat_peptide 2065..2601
/gene="ORF1"
/product="p22"
mat_peptide 2602..3000
/gene="ORF1"
/product="VPg"
mat_peptide 3001..3543
/gene="ORF1"
/product="Pro"
mat_peptide 3544..5073
/gene="ORF1"
/product="RdRp"
gene 5057..6679
/gene="ORF2"
CDS 5057..6679
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38389.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6679..7485
/gene="ORF3"
CDS 6679..7485
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38390.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQVMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tccgctgccg ctgttgccaa cagcaacaac gacatcgcaa aatcttcaag tgacggtgtg
61 ttttctaaca tggctgtcac ttttaagcgg gccctcgggg cgcggcctaa acagccgccc
121 ccgaaggaaa taccacccag acccccgcga ccacccacac cagaattggt caaaaagatc
181 cctcctcccc cacccaacgg ggaggatgaa ctagtggtct cttacaacgc caaagatggc
241 gtttccggac tgcctgagct caccactgtc agacaaccgg aagaaaccaa cacggcgttc
301 agtgtccccc cactcaacca aagggagagc agggacgcca aggagccact aactgggaca
361 atcattgaaa tgtgggatgg agaaatctac cattacggcc tgtacgtgga acgaggtctt
421 atacttggtg tgcacaagcc accagcagcc atcagcctcg ctaaggtcga gctggcacca
481 ctctctttgt tctggagacc tgtatacacc ccccagtacc ttatctctcc agacactctt
541 aggagattac atggagagtc attcccctac actgcatttg acaacaattg ctacgccttt
601 tgttgttggg tattagacct aaacgactca tggctaagca ggagaatgat tcagagaaca
661 acaggcttct ttaggccgta ccaggattgg aacaggaaac ccctccccac tatggatgat
721 tccaaattaa agaaggtagc caacatattt ttgtgcactt tgtcttcact attcaccagg
781 cccatcaagg acataatagg gaagttgaaa cctctcaaca tccttaatat tctggctaca
841 tgtgattgga ccttcgcagg catagtggaa tccttaatac tcttggcaga actctttgga
901 gttttctgga cacccccaga tgtgtctgcg atgatcgccc ccttgctagg tgattatgaa
961 ctgcaaggac ccgaggacct tgcagtggaa ctggtcccaa tagtgatggg agggataggt
1021 ttggttctag gatttaccaa agagaagatc ggaaagatgc tgtcatcagc tgcatccact
1081 ttaagagctt gtaaagacct tggtgcatac ggactggaaa tcttaaaatt ggtcatgaag
1141 tggttcttcc caaagaaaga ggaagcaaat gaactggcta tggtgagatc catcgaggat
1201 gcagtactag atctcgaggc aattgaaaac aaccacatga ccaccctgct caaagacaaa
1261 gacagcttga caacctacat gagaaccctt gaccttgagg aggagaaagc cagaaaactc
1321 tcaaccaaat ctgcttcacc cgatattgtg ggcacaatca actctcttct ggcaagaatc
1381 gctgctgcac gctccctagt gcatcgggcg aaagaagagc tctccagcag gccgagacct
1441 gtcgttgtaa tgatatcggg aagaccaggg atagggaaaa ctcaccttgc cagggagctg
1501 gccaagaaga tcgcggcctc cctcacaggg gaccagcgtg tgggccttat cccacgcaat
1561 ggtgtcgacc actgggacgc atacaagggc gaaagggttg tcctatggga cgactatgga
1621 atgagcaacc ccatccatga tgcccttagg ttgcaggagc ttgctgacac ttgccccctc
1681 acgctaaatt gtgacagaat tgagaacaaa ggaaaagtct ttgacagtga cgccataatt
1741 atcaccacca acctggccaa cccagcacca ctggattatg tcaactttga agcgtgctcg
1801 agacgcattg atttcctcgt gtacgcagaa gcccctgagg tggagaaggc aaagcgcgac
1861 ttcccaggtc aacctgacat gtggaagaac gctttcagtc ctgacttctc acacataaaa
1921 ctgtcattgg ctccacaggg tggttttgac aagaacggca acaccccgca tggaaaaggg
1981 gtcatgaaga ccctcaccac tggctccctc atcgcccgag catcagggtt actccatgag
2041 aggctagatg aatatgaatt gcaaggccca gccctcacca ctttcaactt tgaccgcaac
2101 aagatacttg cttttagaca gctcgctgct gaaaacaagt atgggctgat ggacacaatg
2161 agagttggaa aacagctcaa ggatgtcaag actatgtcag acctcaaaca ggcactcaag
2221 aacatcgcga tcaagaagtg ccagatagtg tacaatggtg gcacctacac acttgaggct
2281 gatggcaagg gcagtgtgaa agttgacaaa gtgcaaagtg ccactgtgca gaccaacaat
2341 gaactagccg gtgccctaca ccacctaaga tgcgctagaa tcagatacta tgttaagtgc
2401 gtccaggagg cactgtattc catcatccaa atcgctgggg ctgcattcgt caccacgcgc
2461 atcgctaagc gcatgaatat acagaatctc tggtccaagc cacaggtgga agacacagaa
2521 gagatggcca acaaagatgg ttgcctaaaa cccaaagatg atgaagagtt tgtcgtttca
2581 tccgacgaca tcaaaactga gggcaagaaa gggaagaaca agtccggccg cggcaagaag
2641 cacacagcct tttcaagtaa agggctcagt gatgaggagt atgatgagta caagagaatc
2701 agagaagaaa ggaatggtaa gtactccata gaagagtacc ttcaggacag agacaggtac
2761 tacgaggagg tggccattgc cagggcaacc gaagaggact tctgtgaaga ggaggaggcc
2821 aaaatccggc agaggatttt cagaccaaca aggaaacaac gcaaagaaga gagggcttct
2881 ctcggcttgg tcacaggctc tgaaatcagg aagagaaacc cagaagactt caaacccaag
2941 ggaaagctgt gggctgatga cgacagaagt gttgactaca atgagaaact caactttgag
3001 gccccaccaa gcatctggtc gcggatagtc aactttggtt caggctgggg cttctgggtc
3061 tcccccagtc tgtttataac atcaacccat gtcatacccc aaggtgcaaa ggagttcttc
3121 ggagtcccta tcaagcaaat ccagatacac aagtcaggtg aattctgccg aatgagattc
3181 ccaaagccaa tcagaaccga tgtgacgggc atgattctag aagaaggtgc gcccgagggg
3241 accgtggcca cactgctcat caagagacca actggagagc tcatgcctct ggcagccaga
3301 atggggaccc atgcaaccat gaaaattcag gggcgcacag ttggagggca aatgggtatg
3361 ctcctgacag gatccaacgc caagagtatg gacctaggca caacaccagg cgactgcggc
3421 tgcccctaca tctacaagag ggggaatgac tacgtggtca taggggtcca tacggctgct
3481 gcccgtggag gaaacactgt catatgtgcc acccagggaa gtgagggaga ggccacactt
3541 gaaggaggtg acagtaaagg gacatactgt ggcgcaccaa tcttgggccc agggagcgct
3601 ccgaagctca gcaccaagac caagttttgg agatcatcca caacaccact cccacctggc
3661 acctacgaac cagcctacct cggtggcaaa gaccctagag tcaaaggtgg cccttcattg
3721 caacaagtta tgagggacca gctgaagcca ttcacagaac ccagaggcaa accaccaaga
3781 ccaaatgtgt tggaagctgc caagaaaacc atcatcaatg tccttgagca aacaattgat
3841 ccaccccaaa aatggtcatt tgcgcaagct tgcgcatccc ttgacaaaac cacctccagc
3901 ggccacccgc accacatgcg gaaaaacgac tgttggaatg gggagtcctt cacaggaaag
3961 ttggctgacc aagcctccaa ggccaaccta atgtttgaag agggaaagaa catgactcca
4021 gtctacacag gtgcacttaa agatgagttg gtaaagaccg ataaagttta tggtaaggtc
4081 aagaagaggc ttctatgggg ttcagatctg gcgaccatga tacggtgcgc ccgagctttt
4141 ggaggcctca tggatgaact caaggcacac tgtgtcacac tccctgtcag agttggtatg
4201 aacatgaatg aggatggccc catcatcttc gagaagcact ccagatatag atatcattat
4261 gatgctgact attcccggtg ggactcaaca caacaaaggg atgtgctagc agcagcacta
4321 gaaatcatgg ttaagttctc tccagaacca cacctggccc agatagttgc agaagacctc
4381 ctttccccta gcgtgatgga tgtgggtgac tttcaaatat caataagtga gggtctcccc
4441 tctggggtgc cttgcacctc tcagtggaat tccatcgccc actggctcct cactctgtgt
4501 gcactctctg aagtcacgga cctgtcccct gatatcattc aggccaactc ccttttctcc
4561 ttctatggtg atgatgagat tgtaagcaca gacataaagt tggacccaga gaggctaaca
4621 gcaaaactca aggagtacgg gctgaaacca acccgccccg acaaaactga aggacccctc
4681 gtcatctctg aagacctgga tggtctgaca ttcctccgga gaactgtgac ccgtgatcca
4741 gctggctggt ttggaaaatt ggaacaaagt tcaattctta ggcaaatgta ctggaccagg
4801 ggtcccaacc atgaagaccc atttgaaaca atgataccac actcccaaag acccatacaa
4861 ttgatgtcct tgctgggcga ggctgcactc cacggcccgg cattctacag caaaatcagc
4921 aaattagtca ttgcagagtt gaaggaaggt ggcatggatt tttacgtacc cagacaagag
4981 ccaatgttca ggtggatgag attctcagat ctgagcacgt gggagggcga tcgcaatctg
5041 gctcccagtt ttgtgaatga agatggcgtc gagtgacgtc aacccatctg atgggtccgc
5101 agccaacctc gtcccagagg tcaacaatga ggttatggct ctggagcccg ttgttggtgc
5161 cgccattgcg gcacctgtag cgggccaaca aaatgtaatt gacccctgga ttagaaacaa
5221 ttttgtacaa gcccctggtg gagagtttac agtatcccct agaaacgctc caggtgaaat
5281 actatggagc gcgcccttgg gccctgatct aaatccctac ttgtctcatt tggccagaat
5341 gtacaatggt tatgcaggtg gttttgaagt gcaggtaatt ctcgcgggga acgcgttcac
5401 cgccgggaag gtcatatttg cagcagtccc accaaatttc ccaactgaag gcttgagccc
5461 cagccaggtc actatgttcc cccatatagt agtagatgtt aggcaactag aacctgtgtt
5521 gattccctta cccgatgtta ggaataattt ctatcattat aatcaatcaa atgatcccac
5581 catcaagttg atagcaatgt tgtatacacc acttagggct aataatgctg gggatgatgt
5641 cttcacagtc tcttgccgag ttctcacgag accatccccc gattttgact tcatatttct
5701 agtgccaccc acagttgagt caagaactaa accattctct gtcccagttt taactgttga
5761 ggagatgacc aattcaagat tccccattcc tttggaaaag ttgttcacgg gtcccagcag
5821 tgcctttgtt gtccaaccac aaaacggtag gtgcacgact gatggcgtgc tcctaggcac
5881 cacccaactg tctcctgtca acatctgcac ctttagagga gatgtcaccc atatcacagg
5941 tagtcataac tatacaatga atttggcttc tcaaaattgg agtaactacg acccaacaga
6001 agaaatccca gcccctctag ggactccaga ctttgtgggg aagattcaag gcatgcttac
6061 ccaaaccaca aggacagatg gctcaacacg cggccacaaa gccacagtgt acactgggag
6121 cgccgacttt gctccaaaac tgggtagagt tcaatttgaa actgacacaa acaatgattt
6181 tgaagctaac caaaacacaa agttcacccc agttggtgtc atccaagatg gtggcaccac
6241 ccatcgaaat gaaccccaac agtgggtact cccaagttac tcaggcagga acactcctaa
6301 tgtgcatctg gcccccgctg tggcccccac ttttccgggt gagcaactcc tcttctttag
6361 atccaccatg cccggatgca gcgggtaccc caacatggat ttggattgtc tgctccccca
6421 ggaatgggtg cagtacttct accaggaggc agccccagca caatctgatg tggctctgct
6481 aagatttgtg aatccagaca caggtagggt tttgtttgaa tgtaagcttc ataaatcagg
6541 ctatgttaca gtggctcaca ctggccaaca tgatttggtt atccccccca atggttattt
6601 taggtttgat tcctgggtca accagtttta cacgcttgcc cccatgggaa atggagcggg
6661 gcgtagacgt gcactataat ggctggagct ttctttgctg gattggcatc tgatgtcctt
6721 ggctctggac ttggttccct tatcaatgct ggggctgggg ccatcaacca aaaagttgag
6781 tttgaaaata acagaaaatt gcaacaagca tccttccaat ttagcagcaa tctacaacag
6841 gcttcctttc aacatgacaa agagatgctc caagcacaaa ttgaggctac caaaaggtta
6901 caacaggaaa tgatgaaagt taagcaggta atgctcctag agggtgggtt ctctgagaca
6961 gatgcagccc gcggggcaat caacgcccct atgacaaaag ccttggactg gagcgggaca
7021 aggtactggg ctcctgatgc taggactaca acatacaatg caggccgctt ttccaccccc
7081 caaccatcag gggcgctgcc aggaagagct aattttaggg atgctgtccc tgctcggggt
7141 tcctctagta agtcttctaa ttcttctact gctacttctg tgtattcaaa tcaaactact
7201 tcaacgagac ttggttctac agctggttct ggtaccagtg tctcgagctt cccgtcaact
7261 gcaaggacta ggagctgggt tgaggaccaa agtaggaatt tgtcaccttt catgaggggg
7321 gcccacaaca tatcgtttgt caccccacca tctagcaggt cctctagcca aggcacagtc
7381 tcaaccgtgc ctaaagagat tttggactcc tggactggcg ctttcaacac gcgcaggcag
7441 ccactcttcg ctcacattcg taagcgaggg gagtcacggg tgtaatgtga aaagac
//