Typing tool
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Typing tool
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Complete norovirus genomes
| OM373624 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5077
ORF2: 5058..6680
ORF3: 6680..7483
LOCUS OM373624 7483 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS290 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM373624
VERSION OM373624.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7483)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7483)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7483
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS290"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5077
/gene="ORF1"
CDS <1..5077
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP38328.1"
/translation="SAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEI
PPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSV
PPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPI
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIV
GTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALK
NIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAKEFFGVPIKQIQIHKSGEFCRMRFPKPIRTDVTGMILEEGAPEGTVATLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPN
VLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCAR
AFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVL
AAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTR
PDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2602
/gene="ORF1"
/product="p22"
mat_peptide 2603..3001
/gene="ORF1"
/product="VPg"
mat_peptide 3002..3544
/gene="ORF1"
/product="Pro"
mat_peptide 3545..5074
/gene="ORF1"
/product="RdRp"
gene 5058..6680
/gene="ORF2"
CDS 5058..6680
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP38329.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6680..>7483
/gene="ORF3"
CDS 6680..>7483
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP38330.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQVMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ttccgctgcc gctgttgcca acagcaacaa cgacatcgca aaatcttcaa gtgacggtgt
61 gttttctaac atggctgtca cttttaagcg ggccctcggg gcgcggccta aacagccgcc
121 cccgaaggaa ataccaccca gacccccgcg accacccaca ccagaattgg tcaaaaagat
181 ccctcctccc ccacccaacg gggaggatga actagtggtc tcttacaacg ccaaagatgg
241 cgtttccgga ctgcctgagc tcaccactgt cagacaaccg gaagaaacca acacggcgtt
301 cagtgtcccc ccactcaacc aaagggagag cagggacgcc aaggagccac taactgggac
361 aatcattgaa atgtgggatg gagaaatcta ccattacggc ctgtacgtgg aacgaggtct
421 tatacttggt gtgcacaagc caccagcagc catcagcctc gctaaggtcg agctggcacc
481 actctctttg ttctggagac ctgtatacac cccccagtac cttatctctc cagacactct
541 taggagatta catggagagt cattccccta cactgcattt gacaacaatt gctacgcctt
601 ttgttgttgg gtattagacc taaacgactc atggctaagc aggagaatga ttcagagaac
661 aacaggcttc tttaggccgt accaggattg gaacaggaaa cccctcccca ctatggatga
721 ttccaaatta aagaaggtag ccaacatatt tttgtgcact ttgtcttcac tattcaccag
781 gcccatcaag gacataatag ggaagttgaa acctctcaac atccttaata ttctggctac
841 atgtgattgg accttcgcag gcatagtgga atccttaata ctcttggcag aactctttgg
901 agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttgctag gtgattatga
961 actgcaagga cccgaggacc ttgcagtgga actggtccca atagtgatgg gagggatagg
1021 tttggttcta ggatttacca aagagaagat cggaaagatg ctgtcatcag ctgcatccac
1081 tttaagagct tgtaaagacc ttggtgcata cggactggaa atcttaaaat tggtcatgaa
1141 gtggttcttc ccaaagaaag aggaagcaaa tgaactggct atggtgagat ccatcgagga
1201 tgcagtacta gatctcgagg caattgaaaa caaccacatg accaccctgc tcaaagacaa
1261 agacagcttg acaacctaca tgagaaccct tgaccttgag gaggagaaag ccagaaaact
1321 ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc aactctcttc tggcaagaat
1381 cgctgctgca cgctccctag tgcatcgggc gaaagaagag ctctccagca ggccgagacc
1441 tgtcgttgta atgatatcgg gaagaccagg gatagggaaa actcaccttg ccagggagct
1501 ggccaagaag atcgcggcct ccctcacagg ggaccagcgt gtgggcctta tcccacgcaa
1561 tggtgtcgac cactgggacg catacaaggg cgaaagggtt gtcctatggg acgactatgg
1621 aatgagcaac cccatccatg atgcccttag gttgcaggag cttgctgaca cttgccccct
1681 cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc tttgacagtg acgccataat
1741 tatcaccacc aacctggcca acccagcacc actggattat gtcaactttg aagcgtgctc
1801 gagacgcatt gatttcctcg tgtacgcaga agcccctgag gtggagaagg caaagcgcga
1861 cttcccaggt caacctgaca tgtggaagaa cgctttcagt cctgacttct cacacataaa
1921 actgtcattg gctccacagg gtggttttga caagaacggc aacaccccgc atggaaaagg
1981 ggtcatgaag accctcacca ctggctccct catcgcccga gcatcagggt tactccatga
2041 gaggctagat gaatatgaat tgcaaggccc agccctcacc actttcaact ttgaccgcaa
2101 caagatactt gcttttagac agctcgctgc tgaaaacaag tatgggctga tggacacaat
2161 gagagttgga aaacagctca aggatgtcaa gactatgtca gacctcaaac aggcactcaa
2221 gaacatcgcg atcaagaagt gccagatagt gtacaatggt ggcacctaca cacttgaggc
2281 tgatggcaag ggcagtgtga aagttgacaa agtgcaaagt gccactgtgc agaccaacaa
2341 tgaactagcc ggtgccctac accacctaag atgcgctaga atcagatact atgttaagtg
2401 cgtccaggag gcactgtatt ccatcatcca aatcgctggg gctgcattcg tcaccacgcg
2461 catcgctaag cgcatgaata tacagaatct ctggtccaag ccacaggtgg aagacacaga
2521 agagatggcc aacaaagatg gttgcctaaa acccaaagat gatgaagagt ttgtcgtttc
2581 atccgacgac atcaaaactg agggcaagaa agggaagaac aagtccggcc gcggcaagaa
2641 gcacacagcc ttttcaagta aagggctcag tgatgaggag tatgatgagt acaagagaat
2701 cagagaagaa aggaatggta agtactccat agaagaatac cttcaggaca gagacaggta
2761 ctacgaggag gtggccattg ccagggcaac cgaagaggac ttctgtgaag aggaggaggc
2821 caaaatccgg cagaggattt tcagaccaac aaggaaacaa cgcaaagaag agagggcttc
2881 tctcggcttg gtcacaggct ctgaaatcag gaagagaaac ccagaagact tcaaacccaa
2941 gggaaagctg tgggctgatg acgacagaag tgttgactac aatgagaaac tcaactttga
3001 ggccccacca agcatctggt cgcggatagt caactttggt tcaggctggg gcttctgggt
3061 ctcccccagt ctgtttataa catcaaccca tgtcataccc caaggtgcaa aggagttctt
3121 cggagtccct atcaagcaaa tccagataca caagtcaggt gaattctgcc gaatgagatt
3181 cccaaagcca atcagaaccg atgtgacggg catgattcta gaagaaggtg cgcccgaggg
3241 gaccgtggcc acactgctca tcaagagacc aactggagag ctcatgcctc tggcagccag
3301 aatggggacc catgcaacca tgaaaattca ggggcgcaca gttggagggc aaatgggtat
3361 gctcctgaca ggatccaacg ccaagagtat ggacctaggc acaacaccag gcgactgcgg
3421 ctgcccctac atctacaaga gggggaatga ctacgtggtc ataggggtcc atacggctgc
3481 tgcccgtgga ggaaacactg tcatatgtgc cacccaggga agtgagggag aggccacact
3541 tgaaggaggt gacagtaaag ggacatactg tggcgcacca atcttgggcc cagggagcgc
3601 tccgaagctc agcaccaaga ccaagttttg gagatcatcc acaacaccac tcccacctgg
3661 cacctacgaa ccagcctacc tcggtggcaa agaccctaga gtcaaaggtg gcccttcatt
3721 gcaacaagtt atgagggacc agctgaagcc attcacagaa cccagaggca aaccaccaag
3781 accaaatgtg ttggaagctg ccaagaaaac catcatcaat gtccttgagc aaacaattga
3841 tccaccccaa aaatggtcat ttgcgcaagc ttgcgcatcc cttgacaaaa ccacctccag
3901 cggccacccg caccacatgc ggaaaaacga ctgttggaat ggggagtcct tcacaggaaa
3961 gttggctgac caagcctcca aggccaacct aatgtttgaa gagggaaaga acatgactcc
4021 agtctacaca ggtgcactta aagatgagtt ggtaaagacc gataaagttt atggtaaggt
4081 caagaagagg cttctatggg gttcagatct ggcgaccatg atacggtgcg cccgagcttt
4141 tggaggcctc atggatgaac tcaaggcaca ctgtgtcaca ctccctgtca gggttggtat
4201 gaacatgaat gaggatggcc ccatcatctt cgagaagcac tccagatata gatatcatta
4261 tgatgctgac tattcccggt gggactcaac acaacaaagg gatgtgctag cagcagcact
4321 agaaatcatg gttaagttct ctccagaacc acacctggcc cagatagttg cagaagacct
4381 cctttcccct agcgtgatgg atgtgggtga ctttcaaata tcaataagtg agggtctccc
4441 ctctggggtg ccttgcacct ctcagtggaa ttccatcgcc cactggctcc tcactctgtg
4501 tgcactctct gaagtcacgg acctgtcccc tgatatcatt caggccaact cccttttctc
4561 cttctatggt gatgatgaga ttgtaagcac agacataaag ttggacccag agaggctaac
4621 agcaaaactc aaggagtacg ggctgaaacc aacccgcccc gacaaaactg aaggacccct
4681 cgtcatctct gaagacctgg atggtctgac attcctccgg agaactgtga cccgtgatcc
4741 agctggctgg tttggaaaat tggaacaaag ttcaattctt aggcaaatgt actggaccag
4801 gggtcccaac catgaagacc catttgaaac aatgatacca cactcccaaa gacccataca
4861 attgatgtcc ttgctgggcg aggctgcact ccacggcccg gcattctaca gcaaaatcag
4921 caaattagtc attgcagagt tgaaggaagg tggcatggat ttttacgtac ccagacaaga
4981 gccaatgttc aggtggatga gattctcaga tctgagcacg tgggagggcg atcgcaatct
5041 ggctcccagt tttgtgaatg aagatggcgt cgagtgacgt caacccatct gatgggtccg
5101 cagccaacct cgtcccagag gtcaacaatg aggttatggc tctggagccc gttgttggtg
5161 ccgccattgc ggcacctgta gcgggccaac aaaatgtaat tgacccctgg attagaaaca
5221 attttgtaca agcccctggt ggagagttta cagtatcccc tagaaacgct ccaggtgaaa
5281 tactatggag cgcgcccttg ggccctgatc taaatcccta cttgtctcat ttggccagaa
5341 tgtacaatgg ttatgcaggt ggttttgaag tgcaggtaat tctcgcgggg aacgcgttca
5401 ccgccgggaa ggtcatattt gcagcagtcc caccaaattt cccaactgaa ggcttgagcc
5461 ccagccaggt cactatgttc ccccatatag tagtagatgt taggcaacta gaacctgtgt
5521 tgattccctt acccgatgtt aggaataatt tctatcatta taatcaatca aatgatccca
5581 ccatcaagtt gatagcaatg ttgtatacac cacttagggc taataatgct ggggatgatg
5641 tcttcacagt ctcttgccga gttctcacga gaccatcccc cgattttgac ttcatatttc
5701 tagtgccacc cacagttgag tcaagaacta aaccattctc tgtcccagtt ttaactgttg
5761 aggagatgac caattcaaga ttccccattc ctttggaaaa gttgttcacg ggtcccagca
5821 gtgcctttgt tgtccaacca caaaacggta ggtgcacgac tgatggcgtg ctcctaggca
5881 ccacccaact gtctcctgtc aacatctgca cctttagagg agatgtcacc catatcacag
5941 gtagtcataa ctatacaatg aatttggctt ctcaaaattg gagtaactac gacccaacag
6001 aagaaatccc agcccctcta gggactccag actttgtggg gaagattcaa ggcatgctta
6061 cccaaaccac aaggacagat ggctcaacac gcggccacaa agccacagtg tacactggga
6121 gcgccgactt tgctccaaaa ctgggtagag ttcaatttga aactgacaca aacaatgatt
6181 ttgaagctaa ccaaaacaca aagttcaccc cagttggtgt catccaagat ggtggcacca
6241 cccatcgaaa tgaaccccaa cagtgggtac tcccaagtta ctcaggcagg aacactccta
6301 atgtgcatct ggcccccgct gtggccccca cttttccggg tgagcaactc ctcttcttta
6361 gatccaccat gcccggatgc agcgggtacc ccaacatgga tttggattgt ctgctccccc
6421 aggaatgggt gcagtacttc taccaggagg cagccccagc acaatctgat gtggctctgc
6481 taagatttgt gaatccagac acaggtaggg ttttgtttga atgtaagctt cataaatcag
6541 gctatgttac agtggctcac actggccaac atgatttggt tatccccccc aatggttatt
6601 ttaggtttga ttcctgggtc aaccagtttt acacgcttgc ccccatggga aatggagcgg
6661 ggcgtagacg tgcactataa tggctggagc tttctttgct ggattggcat ctgatgtcct
6721 tggctctgga cttggttccc ttatcaatgc tggggctggg gccatcaacc aaaaagttga
6781 gtttgaaaat aacagaaaat tgcaacaagc atccttccaa tttagcagca atctacaaca
6841 ggcttccttt caacatgaca aagagatgct ccaagcacaa attgaggcta ccaaaaggtt
6901 acaacaggaa atgatgaaag ttaagcaggt aatgctccta gagggtgggt tctctgagac
6961 agatgcagcc cgcggggcaa tcaacgcccc tatgacaaaa gccttggact ggagcgggac
7021 aaggtactgg gctcctgatg ctaggactac aacatacaat gcaggccgct tttccacccc
7081 ccaaccatca ggggcgctgc caggaagagc taattttagg gatgctgtcc ctgctcgggg
7141 ttcctctagt aagtcttcta attcttctac tgctacttct gtgtattcaa atcaaactac
7201 ttcaacgaga cttggttcta cagctggttc tggtaccagt gtctcgagct tcccgtcaac
7261 tgcaaggact aggagctggg ttgaggacca aagtaggaat ttgtcacctt tcatgagggg
7321 ggcccacaac atatcgtttg tcaccccacc atctagcagg tcctctagcc aaggcacagt
7381 ctcaaccgtg cctaaagaga ttttggactc ctggactggc gctttcaaca cgcgcaggca
7441 gccactcttc gctcacattc gtaagcgagg ggagtcacgg gtg
//