Typing tool
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Typing tool
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Complete norovirus genomes
| OM373562 | GII.3 | |
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| GII.P12 |
ORF1: 1..5077
ORF2: 5058..6704
ORF3: 6704..7468
LOCUS OM373562 7506 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS288 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373562
VERSION OM373562.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7506)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7506)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7506
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS288"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5077
/gene="ORF1"
CDS <1..5077
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP37441.1"
/translation="SAAAAANSNNDNAKSSNDGVLSSMAVTFKRALGARQKQPPPREI
PQRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNTAFSV
PPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQ
RTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILN
ILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPV
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIV
GTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRIGKQLKDVKTMSELKQALK
NVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPS
VLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCAR
AFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVL
AAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTR
PDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..967
/gene="ORF1"
/product="p48"
mat_peptide 968..2065
/gene="ORF1"
/product="NTPase"
mat_peptide 2066..2602
/gene="ORF1"
/product="p22"
mat_peptide 2603..3001
/gene="ORF1"
/product="VPg"
mat_peptide 3002..3544
/gene="ORF1"
/product="Pro"
mat_peptide 3545..5074
/gene="ORF1"
/product="RdRp"
gene 5058..6704
/gene="ORF2"
CDS 5058..6704
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP37442.1"
/translation="MKMASSDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6704..7468
/gene="ORF3"
CDS 6704..7468
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP37443.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGESNV"
ORIGIN
1 ttccgctgcc gctgctgcta atagcaacaa cgacaacgca aaatcttcaa atgacggagt
61 gctttctagc atggctgtca cttttaaacg agccctcggg gcacggcaaa aacagcctcc
121 cccgagggaa ataccacaaa ggcctccacg gccgcccacc ccagaactgg tcaaaaagat
181 ccctcctccc ccacccaatg gggaggatga actagtggtc tcttatagcg ccaaagatgg
241 cgtttctggt ttgcctgaac ttaccactgt ctggcaaccg gatgagacca acacggcatt
301 cagtgttccc cctctcaacc agagggagaa cagggacgcc aaggagccgc tgaccggaac
361 aatcctggaa atgtgggacg gggagatcta tcattatggt ctgtacgtgg agcgaggcct
421 tgtacttggt gtgcacaaac caccagctgc catcagcctc gccaaggttg aactagcacc
481 actctctctg ttttggaggc cagtgtacac accacagtat ctcatctctc cagacactct
541 taggagactg catggagagt cgttccccta cacagccttt gacaacaact gctatgcctt
601 ctgttgttgg gttttggacc taaacgactc gtggttgtgc aggagaatga tccagagaac
661 aactggcttc ttcagacctt accaagagtg gaacaggaaa cccctcccca ccatggatga
721 ctctaaattg aagaaggtag ctaacatatt cttgtgtgcg ctatcttcgc tattcactag
781 gcccatcaaa gacataatag gaaaggtgag accgctcaac atccttaaca tcctggcctc
841 atgtgattgg acttttgcag gcatagtgga atctttgatc ctcttggcag agctctttgg
901 agttttctgg acacccccag atgtgtctgc gatgatcgcc cccttactag gtgactacga
961 actgcagggg cctgaggacc ttgcagtgga gctcgtacca gtagtgatgg gggggattgg
1021 tttggtgtta ggattcacca aagagaagat cggaaaaatg ttgtcatccg ctgcttccac
1081 cctaagagct tgtaaagacc ttggtgcata cgggctggaa atcctaaaat tggtcatgaa
1141 atggttcttc ccaaagaaag aggaagcaaa tgagctagct atggtgaggt ccatcgagga
1201 tgcggtgctg gacctcgaag caattgagaa caaccacatg actgccctcc tcaaagacaa
1261 agacagcctg gcaacctata tgaggaccct tgacctcgag gaggagaaag ccaggaagct
1321 ttcaaccaag tctgcttcac ctgacatcgt gggcacaatt aacgccctcc tggcgagaat
1381 cgccgctgca cgttccctgg tgcatcgggc aaaagaggaa ctctccagca gaccaagacc
1441 tgttgttgtt atgatatcag gtaggccagg gatagggaaa actcaccttg ccagggagct
1501 ggccaagaag attgcagctt cactcacagg ggaccagcgc gtgggtctca tccctcgcaa
1561 tggcgtcgac cactgggatg catataaggg agaaagagtc gtcctatggg acgattatgg
1621 aatgagcaac cccatccacg acgccctcag gttacaggaa cttgctgaca cctgtcccct
1681 tacgctaaac tgtgacagga ttgagaacaa aggaaaggtc tttgatagtg atgccataat
1741 catcaccact aatctagcca acccagcacc attggactat gtcaactttg aagcatgctc
1801 gaggcgcatt gacttcctcg tatacgcaga agcccctgag gtcgagaaag caaagcgtga
1861 tttcccaggt caacctgaca tgtggaagaa cgcatttagc tctgacttct cgcacataaa
1921 actggcgctg gctccgcagg gtggtttcga caagaacgga aacaccccac acgggaaagg
1981 cgtcatgaaa accctcacta ctggttccct cattgcccga gcatcagggc tactccatga
2041 gaggttggat gagtacgagc tgcagggccc aactcccacc acctttaatt ttgaccgcaa
2101 caaggtgctt gcgttcagac aacttgctgc cgaaaacaag tatggattgt tggacacaat
2161 gagaattgga aaacagctca aggatgttaa gaccatgtca gagctcaaac aggcactcaa
2221 gaatgtcgca atcaagagtt gtcagatagt gtatggtggc tgcacctaca ggcttgagtc
2281 tgatggcaag ggtgatgtaa aagttgacag agttcagaac gtcactgtgc agaccaacaa
2341 tgagcttgcc ggcgcattac accatcttag gtgcgccaga atcagatatt atgtcaagtg
2401 tgttcaggag gccctgtatt ccatcatcca aatcgctggg gctgcatttg ttaccacacg
2461 cattgtcaag cgcatgaaca tacaagatct ctggtccaag ccacaggtgg aggacacaga
2521 ggaaatcgcc agcaaggatg ggtgcccaaa accccaggat gatgaagagt ttgttgtctc
2581 atccgatgac atcaaaaccg agggcaagaa agggaagaac aagtctggcc gtggcaagaa
2641 gcacacagca ttttcaagta aaggtctcag tgatgaagag tacgatgagt acaaaagaat
2701 tagagaagaa agaaatggca aatactccat agaggaatac ctccaggaca gagacaggta
2761 ttatgaggag gtggccattg ccagggcaac cgaagaggac ttctgtgaag aagaagaggc
2821 caagatccga cagaggatct tcaggccaac aaggaaacaa cgcaaagagg agagagcctc
2881 tctcggtttg gtcacaggtt ctgaaattag gaagaggaac ccagacgact tcaagcctaa
2941 aggaaagctg tgggctgatg atgacaggag tgttgattac aatgagaagc tcaattttga
3001 agccccacca agcatctggt cgaggatagt caactttggc tcaggctggg gcttttgggt
3061 ttcccccagc ctgttcataa catcaactca tgtcataccc cagggcgcac aggagttctt
3121 tggtgtaccc atcaaacaaa tccagataca taaatcaggt gaattctgcc gcttgaggtt
3181 tccaaagccg atcagaactg atgtgacagg catgatctta gaagaaggtg cacccgaagg
3241 aaccgtggtc acattactca tcaaacgacc aactggtgag ctcatgcccc tggcagccag
3301 aatgggaacc cacgcaacca tgaagataca agggcgcact gttggaggtc aaatgggcat
3361 gctcctaaca ggatccaacg ccaagagtat ggacctgggc accacaccag gtgactgtgg
3421 ctgcccctac atttacaaga gggggaatga ctacgtggtc attggggtcc atacagctgc
3481 cgcacgtgga ggaaacaccg tcatttgtgc cacccagggg agcgagggag aagccacact
3541 tgaaggcggt gatagcaagg ggacctactg cggagcacca atcttaggtc caggaagtgc
3601 cccaaaactc agcaccaaga ccaagttctg gagatcatcc acggcaccac tcccacctgg
3661 cacctatgaa ccagcttacc ttggtggcaa ggaccccaga gttaagggtg gcccttcact
3721 gcaacaagtt atgagggatc aactgaaacc attcactgag cctaggggta ggccaccaaa
3781 accaagtgtg ctagaagctg ccaagaaaac catcgtcaat gtcctagaac agacaattga
3841 tccacctcaa aaatggtcgt ttgcgcaggc atgcgcatcc ctagacaaga ccacttctag
3901 cggccatccg caccacatgc ggaagaatga ctgctggaac ggggagtcct tcacaggaaa
3961 attggcagac caggcttcca aggccaacct gatgtttgag gagggaaaga acatgacccc
4021 agtttacacg ggtgcgctta aggacgagct ggtcaagact gacaagattt atggtaagat
4081 caaaaagagg cttctctggg gttcggacct ggcgaccatg attcggtgcg ctcgagcatt
4141 cgggggtctg atggaggaac ttaaagcaca ttgtgtcaca ctacctgtta gggtgggtat
4201 gaatatgaat gaggatggcc ctatcatctt tgagagacac tccagatata aatatcatta
4261 tgatgctgac tactcccggt gggattcaac acaacaaaga gccgtgttgg cagcagcctt
4321 agaaatcatg gtcaagtttt ccccagagcc acacctggcc caaaaggttg cagaagacct
4381 tctttctccc agcgtgatgg acgtgggtga tttcaaaata tcaatcaatg agggtctccc
4441 ctccggagtg ccctgcacct cccaatggaa ttccatcgcc cactggctcc tcactctctg
4501 tgcactctct gaggttacaa acctgtcccc cgacattatt caggctaact ctctcttttc
4561 tttctacggt gatgatgaaa ttgtgagtac agatataaaa ttggacccag aaaaactgac
4621 agcaaaactc aaggaatacg ggttgaaacc gacccgccct gacaaaactg aagggcctct
4681 tgtcatttcc gaagacctga atggcctaac cttcctgcgg aggaccgtga ctcgcgaccc
4741 agcaggctgg tttggaaaat tggaacagag ctcaatactc agacaaatgt actggactag
4801 gggccccaac catgaagatc catctgaaac aatgatacca cactcccaga ggcccataca
4861 attgatgtct ttgctgggcg aggcagcact ccacggccca gcattctaca gtaaaatcag
4921 taaattggtc attgcagagt tgaaggaggg tggcatggat ttttacgtgc caagacaaga
4981 accaatgttc agatggatga gattctcgga tctgagcacg tgggagggcg atcgcaatct
5041 ggctcccagt tttgtgaatg aagatggcgt cgagtgacgc caccccatct aatgatggtg
5101 ccgccggcct cgtcccagag atcaacaatg aggcaatggc gctagatcca gtggcgggtg
5161 cagcgatagc agcacccctc accggccagc aaaatataat tgatccctgg attatgaata
5221 attttgtgca agcacctggt ggtgagttca cagtgtctcc taggaattcc cctggtgaag
5281 tgctcctcaa tttggaattg ggcccagaga taaaccccta tctggcccat cttgctagga
5341 tgtataatgg ttatgcaggt gggtttgaag tgcaggtggt cctggctgga aatgcgttta
5401 cagcaggaaa gataatcttt gcagctatac cccctaactt cccaattgac aatctaagtg
5461 cagcacagat cacaatgtgc ccacatgtga ttgtggatgt cagacagctg gaaccagtca
5521 acctcccgat gcctgacgtt cgcaataact tcttccacta caaccaaggg tctgattcga
5581 gactgcgctt ggttgcaatg ctgtatacac ctcttagggc aaataactct ggggatgatg
5641 ttttcactgt gtcttgtaga gtgctgacta gacctagtcc tgaattttca tttaacttcc
5701 ttgtgccacc cactgtggag tcaaagacaa aaccttttac cctcccaatt ctgactattt
5761 ctgaaatgtc taattctagg tttccagtgc cgattgattc tctgcacacc agcccaactg
5821 agaatattgt tgtccagtgt caaaatggac gcgtcactct tgatggtgag ttgatgggca
5881 ccactcagct cctacctagt caaatctgtg ctttcagggg cgtgctcact agatcaacaa
5941 gcagggctag cgaccaggcc gacacagcaa cccctagact gttcaattat tattggcaca
6001 tacaattgga taatctaaat gggactcctt atgatcctgc agaagacata ccaggccccc
6061 tagggacacc agattttcgg ggtaaagtct ttggcgtggc cagccaaaga aaccccgaca
6121 gtacaactag agcacatgaa gcaaaggtgg acacaacagc tggtcgcttc accccaaaac
6181 taggctcatt agagatatcc actgaatctg gtgactttga ccaaaaccag ccaacaagat
6241 tcaccccagt tggcattggg gttgaccatg agtcagactt ccagcaatgg tccttacccg
6301 actactctgg tcagttcact cacaacatga acttagcccc agctgttgct cccaatttcc
6361 ctggtgagca gctccttttc ttccgctcac agttaccatc ttctggtggg cgatccaatg
6421 ggattctaga ttgcctggtc ccccaagaat gggtccagca cttctaccaa gaatcagccc
6481 ccgcccaaac ccaggtggct ctggttagat atgtcaatcc tgacactggt agagtgttgt
6541 ttgaggccaa gctgcataaa ttaggtttca tgactatagc taagaatggt gattctccaa
6601 taactgtccc cccaaatgga tactttaggt ttgaatcttg ggtgaaccca ttttatacac
6661 tcgcccccat gggaactggg aatgggcgta gaagagttca ataatggctg gtgcttttat
6721 agcaggatta gctggtgata tatttacaaa tactgtaggg tctttagtta atgcaggggc
6781 taatgctatt aatcaaaaag ttgattttga aaataataaa tatttgcaaa atgcttcctt
6841 caatcatgat aaggaaatgt tgaatgcaca gattgaggca acaaagagat tacaggctga
6901 tatgattgct atcaaacaag gggttttgac cgctggcggc ttttccccca ctgatgcagc
6961 tcgtggggca atcaacgccc ccatgacaaa agtcctagat tggaatggaa caaggtactg
7021 ggcaccaagt gccacctcta caacctcgat gtcaggtggc ttcacaaacc aggctgtgca
7081 cagaaccacg ccaaatttta aaatgaacca ggcccccaga tccacaccca gcagtgggtc
7141 ttcagtgagg tcactctcaa cccaagtcac tagtctgagc tcacactcgt ccgggtcgtc
7201 tcgatccagc gggtctacag ttgctagctc attaccatcc tctaatagga ctagggactg
7261 ggtcaatcag caaaatttca atttggaacc acacatgcct gggtcactta ggacagcttt
7321 cgtcactcca ccatctagta cagcctctag ttcaggcact gtctcaaccg tgcccaaaaa
7381 tgttttggac tcctggacat ctgcgtttaa cacgcgcaga cagccgctat tcgcacacct
7441 tcgtagaagg ggggagtcaa atgtttagtg aaaaggttat ctttaatttg atttaaatta
7501 aatttg
//