Typing tool
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Typing tool
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Complete norovirus genomes
| OM373532 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5075
ORF2: 5056..6678
ORF3: 6678..7484
LOCUS OM373532 7497 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS273 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373532
VERSION OM373532.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7497)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7497)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7497
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS273"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5075
/gene="ORF1"
CDS <1..5075
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP37414.1"
/translation="AAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIP
PRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVP
PLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPL
SLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQR
TTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNI
LATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIV
MGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELA
MVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVG
TINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLT
GDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRI
ENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQP
DMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLD
EYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKN
IAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVK
CVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEF
VVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQ
DRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRN
PEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHV
IPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKR
PTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKR
GNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLST
KTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNV
LEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKL
ADQASKANLMFEEGKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARA
FGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLA
AALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHW
LLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRP
DKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETM
IPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFS
DLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..965
/gene="ORF1"
/product="p48"
mat_peptide 966..2063
/gene="ORF1"
/product="NTPase"
mat_peptide 2064..2600
/gene="ORF1"
/product="p22"
mat_peptide 2601..2999
/gene="ORF1"
/product="VPg"
mat_peptide 3000..3542
/gene="ORF1"
/product="Pro"
mat_peptide 3543..5072
/gene="ORF1"
/product="RdRp"
gene 5056..6678
/gene="ORF2"
CDS 5056..6678
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP37415.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6678..7484
/gene="ORF3"
CDS 6678..7484
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP37416.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 ccgctgccgc tgttgccaac agcaacaacg acatcgcaaa atcttcaagt gacggtgtgt
61 tttctaacat ggctgtcact tttaagcggg ccctcggggc gcggcctaaa cagccgcccc
121 cgaaggaaat accacccaga cccccgcgac cacccacacc agaattggtc aaaaagatcc
181 ctcctccccc acccaacggg gaggatgaac tagtggtctc ttataacgcc aaagatggcg
241 tttccggact gcctgagctc accactgtca gacaaccgga agaaaccaac acggcgttca
301 gtgtcccccc tctcaaccaa agggagagca gggacgccaa ggagccacta actggaacaa
361 tcattgaaat gtgggatgga gaaatctacc attacggcct gtacgtggaa cgaggtctta
421 tacttggtgt gcacaagcca ccggcagcca tcagcctcgc taaggtcgag ctggcaccgc
481 tctctttgtt ctggagacct gtatacaccc cccaatacct tatctctcca gacactctta
541 ggagattaca tggagagtca ttcccctaca ctgcatttga caacaattgc tacgcctttt
601 gttgttgggt attagaccta aacgactcat ggctaagcag gagaatgatt cagagaacaa
661 caggcttctt caggccgtac caggattgga acaggaaacc ccttcccact atggatgatt
721 ccaaattaaa gaaggtagcc aacatattct tgtgcacttt gtcttcacta ttcaccaggc
781 ctattaagga cataataggg aagttgaaac ctctcaacat ccttaatatt ctggctacat
841 gtgattggac cttcgcaggc atagtggaat ccttaatact cttggcagaa ctctttggag
901 ttttctggac acccccagat gtgtctgcga tgatcgcccc cttactaggt gattatgaac
961 tgcaaggacc cgaggacctt gcagtggaac tggtcccaat agtgatgggg gggataggtt
1021 tggtgctagg atttaccaaa gagaagatcg gaaagatgct gtcatccgct gcatccactt
1081 taagagcttg taaagacctt ggtgcatacg gactggaaat cttaaaattg gtcatgaagt
1141 ggttcttccc aaagaaagag gaagcaaatg aactggctat ggtgagatcc atcgaggatg
1201 cagtactaga cctcgaggca attgaaaaca accacatgac caccctgctc aaagacaaag
1261 acagcttgac aacctacatg aggacccttg atcttgagga ggagaaagcc agaaaactct
1321 caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa ctctcttctg gcaagaatcg
1381 ctgctgcacg ctccctagtg catcgggcga aagaagagct ttccagcagg ccgagacctg
1441 tcgttgtaat gatatcggga agaccaggga tagggaaaac tcaccttgcc agggagctgg
1501 ccaagaagat cgcggcctcc ctcacagggg accagcgtgt gggcctcatc ccacgcaatg
1561 gtgtcgacca ctgggacgca tacaagggcg aaagggttgt cctatgggac gactatggaa
1621 tgagcaatcc catccatgat gcccttaggt tgcaggagct tgctgacact tgccccctca
1681 cgctaaactg tgatagaatt gagaacaaag gaaaagtctt tgacagtgat gccataatta
1741 tcaccaccaa cctggccaac ccagcaccac tggattatgt caactttgaa gcgtgctcga
1801 gacgcattga tttcctcgtg tacgcagaag cccctgaggt ggagaaggca aagcgcgact
1861 tcccaggtca acctgacatg tggaagaacg ctttcagtcc tgacttctca cacataaaac
1921 tgtcattggc tccacagggt ggttttgaca agaacggcaa caccccgcat ggaaaagggg
1981 tcatgaagac cctcaccact ggctccctca tcgcccgagc atcggggtta ctccatgaga
2041 ggctagatga atatgaattg caaggcccag ccctcaccac tttcaacttt gaccgcaaca
2101 agatacttgc ttttagacag cttgctgctg aaaacaagta tgggctgatg gacacaatga
2161 gagttggaaa gcagctcaag gatgtcaaga ctatgtcaga cctcaaacaa gcactcaaga
2221 acatcgcaat caagaagtgc cagatagtgt acaatggtgg cacctacaca cttgaggctg
2281 atggcaaggg cagtgtgaaa gttgacaaag tgcaaagtgc cactgtgcag accaacaatg
2341 aactagccgg tgccctacac cacctaagat gcgctagaat cagatactat gttaagtgcg
2401 tccaggaggc actgtattcc atcatccaaa tcgctggggc tgcattcgtc accacgcgca
2461 tcgctaagcg catgaatata cagaatctct ggtccaagcc acaggtggaa gacacagaag
2521 agatggccaa caaagatggt tgcctaaaac ccaaagatga tgaagagttt gtcgtttcat
2581 ccgacgacat caaaactgag ggcaagaaag ggaagaacaa gtccggccgt ggcaagaagc
2641 acacagcctt ttcaagtaaa gggctcagtg atgaggagta cgatgagtac aagagaatca
2701 gagaagaaag gaatggtaag tactccatag aagagtacct tcaggacaga gacaggtact
2761 acgaggaggt ggccattgcc agggcaaccg aagaggactt ctgtgaagaa gaagaggcca
2821 aaatccggca gaggattttc agaccaacaa ggaaacaacg taaagaagag agggcttctc
2881 tcggcttggt cacaggctct gaaatcagga agagaaaccc agaagacttc aaacccaagg
2941 gaaagctgtg ggctgatgac gacagaagtg ttgactacaa tgagaaactc aactttgagg
3001 ccccaccaag catctggtcg cggatagtca actttggttc aggctggggc ttctgggtct
3061 cccccagtct gtttataaca tcaacccatg tcatacccca aggtgcaaag gagttcttcg
3121 gagtccctat caagcaaatc cagatacaca agtcaggtga attctgccga ttgagattcc
3181 caaagccaat cagaaccgat gtgacgggca tgattctaga agaaggtgcg cccgagggga
3241 ccgtggccac actgctcatc aagagaccaa ctggagagct catgcctctg gcagccagaa
3301 tgggtaccca tgcaaccatg aaaattcagg ggcgcacagt tggagggcaa atgggtatgc
3361 tcctgacagg atccaacgcc aagagtatgg acctaggcac aacaccaggc gactgcggct
3421 gcccctacat ctacaagagg gggaatgact acgtggtcat aggggtccat acggctgctg
3481 cccgtggagg aaacactgtc atatgtgcca cccagggaag tgagggagag gccacacttg
3541 aaggaggtga cagtaagggg acatactgtg gcgcgccaat cttgggccca gggagcgctc
3601 cgaagctcag caccaagact aagttttgga gatcatccac aacaccactc ccacctggca
3661 cctacgaacc agcctacctc ggtggcaaag accctagagt caaaggtggc ccttcattgc
3721 aacaagttat gagggaccag ctgaagccat tcacagaacc cagaggcaaa ccaccaagac
3781 caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa acaattgatc
3841 caccccaaaa atggtcattt gcgcaagctt gcgcatccct tgacaaaacc acctccagcg
3901 gccatccgca ccacatgcgg aaaaacgact gttggaatgg ggagtccttc acaggaaagt
3961 tggctgacca agcctccaag gccaacctaa tgtttgaaga gggaaagaac atgactccaa
4021 tctacacagg tgcacttaaa gatgagttgg taaagaccga taaagtttat ggtaaggtca
4081 agaagaggct tctatggggt tcagatctgg cgaccatgat acggtgcgcc cgagcttttg
4141 gaggcctcat ggatgaactc aaggcacact gtgtcacact ccctgtcaga gttggtatga
4201 acatgaatga ggatggcccc atcatcttcg agaagcactc cagatataga tatcattatg
4261 atgctgacta ttcccggtgg gactcaacac aacaaaggga tgtgctagca gcagcactag
4321 aaatcatggt taagttctct ccagaaccac acctggccca gatagttgca gaagacctcc
4381 tttcccctag cgtgatggat gtgggtgact ttcaaatatc aataagtgag ggtctcccct
4441 ctggggtgcc ttgcacctcc cagtggaatt ccatcgccca ctggctcctc actctgtgtg
4501 cactctctga agtcacggac ctgtcccctg atatcattca ggccaactcc cttttctcct
4561 tctatggtga tgatgagatt gtaagcacag acataaagtt ggacccagag aggctaacag
4621 caaaactcaa ggagtacgga ctgaaaccaa cccgtcccga caaaactgaa ggaccccttg
4681 tcatctctga agacctggat ggtctgacat tcctccggag aactgtgacc cgtgatccag
4741 ctggctggtt tggaaaattg gaacaaagtt caattcttag gcaaatgtac tggaccaggg
4801 gtcccaacca tgaagaccca tttgaaacaa tgataccaca ctcccagaga cccatacaat
4861 tgatgtcctt gctgggcgag gctgcactcc acggcccggc attctacagc aaaattagca
4921 aattagtcat tgcagagttg aaggaaggtg gcatggattt ttacgtaccc agacaagagc
4981 caatgttcag atggatgaga ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg
5041 ctcccagttt tgtgaatgaa gatggcgtcg agtgacgtca acccatctga tgggtccgca
5101 gccaacctcg tcccagaggt caacaatgag gttatggctc tggagcccgt tgttggtgcc
5161 gccatcgcgg cacctgtagc gggccaacaa aatgtaattg acccctggat tagaaacaat
5221 tttgtacaag cccctggtgg agagtttaca gtatccccta gaaacgctcc aggtgaaata
5281 ctatggagcg cgcccttggg ccctgatcta aatccctact tgtctcattt ggccagaatg
5341 tacaatggtt atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa cgcgttcacc
5401 gccgggaagg tcatatttgc agcagtccca ccaaattttc caactgaagg cttgagcccc
5461 agccaggtta ctatgttccc ccatatagta gtagatgtta ggcaactaga acctgtgttg
5521 attcccttac ccgatgttag gaataatttc tatcattaca atcaatcaaa tgaccccacc
5581 attaagttga tagcaatgtt gtatacacca cttagggcta ataatgctgg ggatgatgtc
5641 ttcacagttt cttgccgagt tctcacgaga ccatcccccg attttgactt catatttcta
5701 gtgccaccca cagttgagtc aagaactaaa ccattctctg tcccagtttt gactgttgag
5761 gagatgacca attcaagatt ccccattcct ttggaaaagt tgttcacggg tcccagcagt
5821 gcctttgttg tccaaccaca aaacggtagg tgcacgactg atggcgtgct cctaggcacc
5881 acccaactgt ctcctgtcaa catctgcacc tttagaggag atgtcaccca tatcacaggt
5941 agtcataact atacaatgaa tttggcttct caaaattgga gcaactacga cccaacagaa
6001 gaaatcccag cccctctagg gactccagac tttgtgggga agattcaagg tatgcttacc
6061 caaaccacaa ggacagatgg ctcaacacgc ggccacaaag ccacagtgta cactgggagc
6121 gccgactttg ctccaaaact gggtagagtt caatttgaga ctgacacaaa caatgatttt
6181 gaagctaacc aaaacacaaa gttcacccca gttggtgtca tccaagatgg tggcaccacc
6241 caccgaaatg aaccccaaca gtgggtgctc ccaagttact caggcaggaa cactcctaat
6301 gtgcatctag cccccgctgt ggccccaact tttccgggtg agcaactcct cttctttaga
6361 tccaccatgc ccggatgcag cgggtacccc aacatggatt tggattgtct gctcccccag
6421 gaatgggtgc agtacttcta ccaggaggca gccccagcac aatctgatgt ggctctgcta
6481 agatttgtga atccagacac aggtagggtt ttgtttgaat gtaagcttca caaatcaggc
6541 tatgttacag tggctcacac cggccaacat gatttggtta tcccccccaa tggttatttt
6601 aggtttgatt cctgggtcaa ccagttttac acgcttgccc ccatgggaaa tggagcgggg
6661 cgtagacgtg cactataatg gctggagctt tctttgctgg attggcatct gatgtccttg
6721 gctctggact tggttccctt atcaatgctg gggctggggc catcaaccaa aaagttgagt
6781 ttgaaaataa cagaaaattg caacaagcat ccttccaatt tagcagcaat ctacaacagg
6841 cttcctttca acatgacaaa gagatgctcc aagcacaaat tgaggctacc aaaaggttac
6901 aacaggaaat gatgaaagtt aagcaggcag tgctcctaga gggtgggttc tctgagacag
6961 atgcagcccg cggggcaatt aacgccccta tgacaaaagc cttggactgg agcgggacaa
7021 ggtactgggc tcctgatgct aggactacaa catacaatgc aggccgcttt tccacccccc
7081 aaccatcggg ggcgctgcca ggaagagcta atcttaggga tgctgtccct gctcggggtt
7141 cctctagtaa gtcttctaat tcttctatcg ctacttctgt gtattcaaat caaactactt
7201 caacgagact tggttctaca gctggttctg gtaccagtgt ctcgagcttc ccgacaactg
7261 caaggactag gagctgggtt gaggaccaaa gtaggaattt gtcacctttc atgagggggg
7321 cccacaacat atcgtttgtc accccaccat ctagcaggtc ctctagccaa ggcacagtct
7381 caaccgtgcc taaagagatt ttggactcct ggactggcgc tttcaacacg cgcaggcagc
7441 cactcttcgc tcacattcgt aagcgagggg agtcacgggt gtaatgtgaa aagacaa
//