Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM373317 | GII.4 Sydney | |
|
|---|---|---|---|
| GII.P31 |
ORF1: 1..5090
ORF2: 5071..6693
ORF3: 6693..7499
LOCUS OM373317 7542 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS257 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373317
VERSION OM373317.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7542)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7542)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7542
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS257"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5090
/gene="ORF1"
CDS <1..5090
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP36724.1"
/translation="SNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQPP
PKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETNT
AFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKV
ELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSR
RMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPL
NILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVE
LVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEE
ANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSAS
PDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKI
AASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTL
NCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRD
FPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARASGLL
HERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLK
QALKNIAIKRCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARI
RYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPK
DDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSI
EEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSE
IRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFI
TSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVAT
LLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCP
YIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSA
PKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKP
PRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGES
FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMI
RCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQ
RDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWN
SIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGL
KPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHED
PFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFR
WMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..980
/gene="ORF1"
/product="p48"
mat_peptide 981..2078
/gene="ORF1"
/product="NTPase"
mat_peptide 2079..2615
/gene="ORF1"
/product="p22"
mat_peptide 2616..3014
/gene="ORF1"
/product="VPg"
mat_peptide 3015..3557
/gene="ORF1"
/product="Pro"
mat_peptide 3558..5087
/gene="ORF1"
/product="RdRp"
gene 5071..6693
/gene="ORF2"
CDS 5071..6693
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP36725.1"
/translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6693..7499
/gene="ORF3"
CDS 6693..7499
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP36726.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS
NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIHKRGESRV"
ORIGIN
1 cgtctaacga cgcttccgct gccgctgttg ccaacagcaa caacgacatc gcaaaatctt
61 caagtgacgg tatgttttct aacatggctg tcacttttaa gcgggccctc ggggcgcggc
121 ctaaacagcc gcccccgaag gaaataccac ccagaccccc gcgaccaccc acaccagaat
181 tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg gtctcttaca
241 gcgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa ccggaagaaa
301 ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac gccaaggagc
361 cattaactgg aacaatcatt gaaatgtggg atggagaaat ctaccattac ggcctgtacg
421 tggaacgagg tcttatactt ggtgtgcaca agccaccagc agccatcagc ctcgccaagg
481 tcgagctggc accgctctct ctgttctgga gacctgtata caccccccag taccttatct
541 ctccagacac tcttaggaga ttacatggag agtcattccc ctacaccgca tttgataaca
601 attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggcta agcaggagaa
661 tgattcagag aacaacaggc ttcttcaggc cgtaccagga ttggaacagg aaacccctcc
721 ccactatgga tgattccaaa ttaaagaagg tagccaacat attcttgtgc actttgtctt
781 cactattcac taggcccatt aaggacataa tagggaagtt gaaacccctc aacatcctta
841 atattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta atactcttag
901 cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc gcccccttgc
961 taggtgatta tgaactgcaa ggacccgagg accttgcagt ggaactggtc ccaatagtga
1021 tgggggggat aggtttggtg ctaggattta ccaaagagaa aatcggaaag atgctgtcat
1081 ccgctgcatc cactttgaga gcttgtaaag accttggtgc atacggactg gaaatcttaa
1141 aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg gctatggtga
1201 gatccatcga ggatgcagta ctagacctcg aggcaattga aaacaaccac atgaccaccc
1261 tgctcaaaga caaagacagc ttgacaacct atatgagaac ccttgacctt gaggaggaga
1321 aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca atcaactctc
1381 ttctggcaag gatcgctgct gcacgctccc tagtgcatcg agcgaaagaa gagctctcca
1441 gcaggccgag acctgtcgtt gtaatgatat cgggaagacc aggtataggg aaaactcacc
1501 ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag cgtgtgggcc
1561 ttatcccacg caatggtgtc gatcactggg acgcatacaa gggcgaaaga gttgtcctat
1621 gggacgacta tggaatgagc aaccccatcc atgatgccct cagattgcag gagcttgctg
1681 acacttgccc cctcacgcta aattgtgaca gaattgagaa caagggaaaa gtctttgaca
1741 gtgatgccat aattatcacc accaacctgg ccaacccagc accactggat tatgtcaact
1801 ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct gaggtggaga
1861 aggcgaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc agtcctgact
1921 tctcacacat aaaactatcg ttggctccac aggggggttt tgacaagaac ggcaacaccc
1981 cgcacggaaa gggaatcatg aagaccctca ccactggctc cctcatcgcc cgagcatcag
2041 ggttactcca tgagaggcta gatgaatatg aattgcaagg cccagccctc actactttca
2101 actttgaccg caacaagata cttgctttta gacagcttgc tgctgaaaac aagtatgggc
2161 tgatggacac aatgagagtt gggaaacagc tcaaggatgt caagactatg tcagacctca
2221 aacaagcact caagaacatc gcgatcaaga ggtgccagat agtgtacaat ggtggcacct
2281 acacacttga ggctgatggc aagggcagtg tgaaggttga caaagtgcaa agtgccactg
2341 tgcagaccaa caatgaacta gccggtgccc tacaccacct aagatgcgct agaatcagat
2401 actatgttaa gtgcgtccag gaggcactgt attccatcat ccaaatcgct ggggctgcat
2461 tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc aagccacagg
2521 tggaagacac agaagagatg gccaacaaag atggttgcct aaaacccaaa gatgatgaag
2581 agtttgtcgt ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag aacaagtccg
2641 gccgtggcaa gaagcacaca gccttttcaa gtaaagggct cagtgatgag gagtacgatg
2701 agtacaaaag aatcagagaa gaaaggaatg gtaagtactc catagaagag taccttcagg
2761 acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagag gacttctgtg
2821 aagaagaaga ggccaaaatc cggcagagga ttttcagacc aacaaggaaa caacgcaaag
2881 aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga aacccagaag
2941 atttcaaacc caagggaaag ctgtgggctg atgatgacag aagtgttgac tacaatgaga
3001 aactcaactt tgaagcccca ccaagcatct ggtcgcggat agtcaacttt ggttcaggct
3061 ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata ccccagggtg
3121 caaaagagtt cttcggagtc cctatcaagc aaatccagat acacaagtca ggtgagttct
3181 gtcgactgag attcccaaag ccaatcagaa ctgatgtgac gggcatgatt ctagaagaag
3241 gtgcgcccga ggggaccgtg gccacactgc tcatcaagag accaactgga gagctcatgc
3301 ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc acagttggag
3361 ggcaaatggg tatgctcctg acaggatcca acgccaagag catggaccta ggcacaacac
3421 caggcgactg cggctgcccc tacatctaca agagggggaa tgactacgtg gttatagggg
3481 tccatacggc cgctgcccgc ggaggaaaca ctgtcatatg tgccacccag ggaagtgagg
3541 gagaggccac actcgaggga ggtgatagta aggggacata ctgtggcgca ccaatcttgg
3601 gcccagggag cgctccgaag ctcagcacca agactaagtt ttggagatca tccacaacac
3661 cactcccacc tggcacctac gaaccagcct acctcggtgg caaagaccct agagtcaaag
3721 gtggcccttc attgcaacaa gttatgagag accagctgaa gccattcaca gaacccagag
3781 gcaaaccacc aagaccaaat gtgttggaag ctgccaagaa gaccatcatc aatgtccttg
3841 agcaaacaat tgatccaccc caaaaatggt catttgcgca agcttgcgca tcccttgaca
3901 agaccacctc cagcggccac ccgcaccaca tgcggaaaaa cgactgttgg aatggggagt
3961 ccttcacagg aaaattggct gaccaagcct ccaaggccaa cctaatgttt gaagagggaa
4021 agaacatgac cccagtctac acaggtgcac ttaaagatga gttggtgaag accgataaag
4081 tttatggtaa ggtcaagaag aggcttctgt ggggttcaga tctggcgacc atgatacggt
4141 gcgcccgagc ttttggaggc ctcatggatg aactcaaggc acactgtgtc acgctccctg
4201 tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaag cactccagat
4261 atagatatca ctatgatgct gactattccc gatgggactc aacacaacaa agggatgtgc
4321 tagcagcagc actagaaatc atggttaagt tctctccaga accacacctg gcccagatag
4381 ttgcagaaga cctcctctcc cctagcgtga tggatgtggg tgactttcaa atatcaataa
4441 gtgagggcct cccctctggg gtgccttgta cctcccagtg gaattccatc gcccactggc
4501 tcctcactct gtgtgcactc tctgaagtca cggacctgtc ccctgatatc attcaggcca
4561 actccctttt ctccttctat ggtgatgatg agattgtaag cacagacata aagttggacc
4621 cagagaggct gacagcaaaa ctcaaggagt acgggctgaa accaacccgc cccgacaaaa
4681 ctgaaggacc ccttgttatc tctgaagacc tggatggtct aacattcctc cggagaactg
4741 tgacccgtga tccagctggc tggtttggaa aattggaaca aagttcaatt cttaggcaaa
4801 tgtactggac caggggtccc aaccatgaag atccatttga aacaatgata ccacactccc
4861 aaagacccat acaattgatg tctttgctgg gcgaggctgc actccacggc ccggcattct
4921 acagcaaaat tagcaaatta gtcattgcag agttgaagga aggtggcatg gatttttatg
4981 tacccagaca agagccaatg ttcagatgga tgagattctc agatctgagc acgtgggagg
5041 gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga cgccaaccca
5101 tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat ggctctggag
5161 cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt gattgacccc
5221 tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtgtc ccctagaaac
5281 gctccaggtg aaatactatg gagcgcgccc ttgggccctg atctaaatcc ctacttatct
5341 catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt aattctcgcg
5401 gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa ttttccaact
5461 gaaggcttga gccccagcca ggtcactatg ttcccccata tagtagtaga tgttaggcaa
5521 ctagaacctg tgttgattcc cttacccgat gttaggaata atttctatca ttataatcaa
5581 tcaaatgacc ccactattaa gttgatagca atgttgtata caccacttag ggctaataat
5641 gctggggatg atgtcttcac agtttcttgc cgagttctca cgaggccatc ccccgatttt
5701 gacttcatat ttctagtgcc acccacagtt gagtcaagaa ctaagccatt ctctgtccca
5761 attttaactg ttgaggaaat gaccaattca agattcccca ttcctttgga aaagttgttc
5821 acgggtccca gcagtgcctt tgttgtccaa ccacaaaacg gtagatgcac gactgatggc
5881 gtgctcctag gcaccaccca actgtctcct gttaacatct gcaccttcag aggagatgtc
5941 acccatatca caggtagcca taactacaca atgaatttgg cttctcaaaa ttggagcaat
6001 tacgacccaa cggaagaaat tccagcccct ctagggactc cagactttgt ggggaagatt
6061 caaggcatgc tcacccaaac cacaaggaca gatggctcaa cacgcggcca caaagccaca
6121 gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt tgaaactgac
6181 acaaacaatg attttgaagc taaccaaaac acaaagttca ccccagttgg tgtcatccaa
6241 gatggtggca ccacccaccg aaatgaaccc caacagtggg tgctcccaag ttactcaggc
6301 aggaacactc ctaatgtgca tctggccccc gctgtagccc ccacttttcc gggtgagcaa
6361 ctcctcttct tcagatccac catgcccgga tgcagcgggt accccaacat ggatttggat
6421 tgtctgctcc cccaggaatg ggtgcagtac ttctaccaag aggcagcccc agcacaatcc
6481 gatgtggctc tgctaaggtt tgtgaatcca gacacaggta gggttttgtt tgaatgtaag
6541 cttcataaat caggctatgt tacagtggct cacactggcc agcatgattt ggttatcccc
6601 cccaatggtt attttaggtt tgattcctgg gtcaaccagt tttacacgct tgcccccatg
6661 ggaaatggag cggggcgtag acgtgcacta taatggctgg agctttcttt gctggattgg
6721 catctgatgt ccttggctct gggcttggtt cccttatcaa cgctggggct ggggccatca
6781 accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttt caatttagca
6841 gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca caaattgagg
6901 ctaccaaaaa gttacaacag gaaatgatga aagttaaaca ggcaatgctc ttagagggtg
6961 ggttctctga gacagatgca gcccgcgggg caatcaacgc ccctatgaca aaagctttgg
7021 attggagcgg gacaaggtac tgggctcctg atgctaggac cacaacatac aatgcaggcc
7081 gcttttccac cccccaacca tcgggggcgc tgccaggaag agctaatctt agggatgctg
7141 tccctgctcg gggttcctct agtaggtctt ctaattcctc tactgctact tctgtgtact
7201 caaatcaaac tatttcaacg agacttggtt ctacagctgg ttctggtacc agtgtctcga
7261 gcttcccgtc aactgcaagg actaggagct gggttgagga tcaaagtagg aatttgtcac
7321 cttttatgag gggggcccac aacatatcgt ttgtcacccc accatctagc agatcctcta
7381 gccaaggcac agtctcaacc gtgcctaaag agattttgga ctcctggact ggcgctttca
7441 acacgcgcag gcagccactc ttcgctcaca tccataagcg aggggagtca cgggtgtaat
7501 gtgaaaagac aaaattgatt atttttcttt tctttagtgt ct
//