Typing tool
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Typing tool
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Complete norovirus genomes
| OM373210 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5035
ORF2: 5016..6638
ORF3: 6638..7444
LOCUS OM373210 7460 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS241 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373210
VERSION OM373210.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7460)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7460)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7460
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS241"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5035
/gene="ORF1"
CDS <1..5035
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP32605.1"
/translation="SSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPPRPPTPELVK
KIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRDAKEP
LTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFWRPVYTPQYL
ISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDWNR
KPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDWTFAGIVE
SLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGLVLGFTKE
KIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDLE
AIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAAAR
SLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRNGV
DHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAII
ITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSPDFSH
IKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPALTTFN
FDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKCQIVYNGG
TYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQIA
GAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDDIKTEGKK
GKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVAIAR
ATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWAD
DDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGVPI
KQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAARMG
THATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTAA
ARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTPLP
PGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINVLE
QTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFEE
GKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAHCV
TLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSPEP
HLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVTDL
SPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTEGPLVISEDL
DGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLMSL
LGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAP
SFVNEDGVE"
mat_peptide <1..925
/gene="ORF1"
/product="p48"
mat_peptide 926..2023
/gene="ORF1"
/product="NTPase"
mat_peptide 2024..2560
/gene="ORF1"
/product="p22"
mat_peptide 2561..2959
/gene="ORF1"
/product="VPg"
mat_peptide 2960..3502
/gene="ORF1"
/product="Pro"
mat_peptide 3503..5032
/gene="ORF1"
/product="RdRp"
gene 5016..6638
/gene="ORF2"
CDS 5016..6638
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP32606.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6638..7444
/gene="ORF3"
CDS 6638..7444
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP32607.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 atcttcaagt gacggtgtgt tttctaacat ggctgtcact tttaagcggg ccctcggggc
61 gcggcctaaa cagccgcccc cgaaggaaat accacccaga cccccgcgac cacccacacc
121 agaattggtc aaaaagatcc ctcctccccc acccaacggg gaggatgaac tagtggtctc
181 ttataacgcc aaagatggcg tttccggact gcctgagctc accactgtca gacaaccgga
241 agaaaccaac acggcgttca gtgtcccccc tctcaaccaa agggagagca gggacgccaa
301 ggagccacta actggaacaa tcattgaaat gtgggatgga gaaatctacc attacggcct
361 gtacgtggaa cgaggtctta tacttggtgt gcacaagcca ccggcagcca tcagcctcgc
421 taaggtcgag ctggcaccgc tctctttgtt ctggagacct gtatacaccc cccaatacct
481 catctctcca gacactctta ggagattaca tggagagtca ttcccctaca ctgcatttga
541 caacaattgc tacgcctttt gttgttgggt attagaccta aacgactcat ggctaagcag
601 gagaatgatt cagagaacaa caggcttctt caggccgtac caggattgga acaggaaacc
661 ccttcccact atggatgatt ccaaattaaa gaaggtagcc aacatattct tgtgcacttt
721 gtcttcacta ttcaccaggc ctattaagga cataataggg aagttgaaac ctctcaacat
781 ccttaatatt ctggctacat gtgattggac cttcgcaggc atagtggaat ccttaatact
841 cttggcagaa ctctttggag ttttctggac acccccagat gtgtctgcga tgatcgcccc
901 cttgctaggt gattatgaac tgcaaggacc cgaggacctt gcagtggaac tggtcccaat
961 agtgatgggg gggataggtt tggtgctagg atttaccaaa gagaagatcg gaaagatgct
1021 gtcatccgct gcatccactt taagagcttg taaagacctt ggtgcatacg gactggaaat
1081 cttaaaattg gtcatgaagt ggttcttccc aaagaaagag gaagcaaatg aactggctat
1141 ggtgagatcc atcgaggatg cagtactaga cctcgaggca attgaaaaca accacatgac
1201 caccctgctc aaagacaaag acagcttgac aacctacatg aggacccttg atcttgagga
1261 ggagaaagcc agaaaactct caaccaaatc tgcttcaccc gatattgtgg gcacaatcaa
1321 ctctcttctg gcaagaatcg ctgctgcacg ctccctagtg catcgggcga aagaagagct
1381 ttccagcagg ccgagacctg tcgttgtaat gatatcggga agaccaggga tagggaaaac
1441 tcaccttgcc agggagctgg ccaagaagat cgcggcctcc ctcacagggg accagcgtgt
1501 gggcctcatc ccacgcaatg gtgtcgacca ctgggacgca tacaagggcg aaagggttgt
1561 cctatgggac gactatggaa tgagcaaccc catccatgat gcccttaggt tgcaggagct
1621 tgctgacact tgccccctca cgctaaactg tgacagaatt gagaacaaag gaaaagtctt
1681 tgacagtgat gccataatta tcaccaccaa cctggccaac ccagcaccac tggattatgt
1741 caactttgaa gcgtgctcga gacgcattga tttcctcgtg tacgcagaag cccctgaggt
1801 ggagaaggca aagcgcgact tcccaggtca acctgacatg tggaagaacg ctttcagtcc
1861 tgacttctca cacataaaac tgtcattggc tccacagggt ggttttgaca agaacggcaa
1921 caccccgcat ggaaaagggg tcatgaagac cctcaccact ggctccctca tcgcccgagc
1981 atcggggtta ctccatgaga ggctagatga atatgaattg caaggcccag ccctcaccac
2041 tttcaacttt gaccgcaaca agatacttgc ttttagacag cttgctgctg aaaacaagta
2101 tgggctgatg gacacaatga gagttggaaa gcagctcaag gatgtcaaga ctatgtcaga
2161 cctcaaacaa gcactcaaga acatcgcaat caagaagtgc cagatagtgt acaatggtgg
2221 cacctacaca cttgaggctg atggcaaggg cagtgtgaaa gttgacaaag tgcaaagtgc
2281 cactgtgcag accaacaatg aactagccgg tgccctacac cacctaagat gcgctagaat
2341 cagatactat gttaagtgcg tccaggaggc actgtattcc atcatccaaa tcgctggggc
2401 tgcattcgtc accacgcgca tcgctaagcg catgaatata cagaatctct ggtccaagcc
2461 acaggtggaa gacacagaag agatggccaa caaagatggt tgcctaaaac ccaaagatga
2521 tgaagagttt gtcgtttcat ccgacgacat caaaactgag ggcaagaaag ggaagaacaa
2581 gtccggccgt ggcaagaagc acacagcctt ttcaagtaaa gggctcagtg atgaggagta
2641 cgatgagtac aagagaatca gagaagaaag gaatggtaag tactccatag aagagtacct
2701 tcaggacaga gacaggtact acgaggaggt ggccattgcc agggcaaccg aagaggactt
2761 ctgtgaagaa gaagaggcca aaatccggca gaggattttc agaccaacaa ggaaacaacg
2821 taaagaagag agggcttctc tcggcttggt cacaggctct gaaatcagga agagaaaccc
2881 agacgacttc aaacccaagg gaaagctgtg ggctgatgac gacagaagtg ttgactacaa
2941 tgagaaactc aactttgagg ccccaccaag catctggtcg cggatagtca actttggttc
3001 aggctggggc ttctgggtct cccccagtct gtttataaca tcaacccatg tcatacccca
3061 aggtgcaaag gagttcttcg gagtccctat caagcaaatc cagatacaca agtcaggtga
3121 attctgccga ttgagattcc caaagccaat cagaaccgat gtgacgggca tgattctaga
3181 agaaggtgcg cccgagggga ccgtggccac actgctcatc aagagaccaa ctggagagct
3241 catgcctctg gcagccagaa tggggaccca tgcaaccatg aaaattcagg ggcgcacagt
3301 tggagggcaa atgggtatgc tcctgacagg atccaacgcc aagagtatgg acctaggcac
3361 aacaccaggc gactgcggct gcccctacat ctacaagagg gggaatgact acgtggtcat
3421 aggggtccat acggctgctg cccgtggagg aaacactgtc atatgtgcca cccagggaag
3481 tgagggagag gccacacttg aaggaggtga cagtaagggg acatactgtg gcgcgccaat
3541 cttgggccca gggagcgctc cgaagctcag caccaagact aagttttgga gatcatccac
3601 aacaccactc ccacctggca cctacgaacc agcctacctc ggtggcaaag accctagagt
3661 caaaggtggt ccttcattgc aacaagttat gagggaccag ctgaagccat tcacagaacc
3721 cagaggcaaa ccaccaagac caaatgtgtt ggaagctgcc aagaaaacca tcatcaatgt
3781 ccttgagcaa acaattgatc caccccaaaa atggtcattt gcgcaagctt gcgcatccct
3841 tgacaaaacc acctccagcg gccatccgca ccacatgcgg aaaaacgact gttggaatgg
3901 ggagtccttc acaggaaagt tggctgacca agcctccaag gccaacctaa tgtttgaaga
3961 gggaaagaac atgactccaa tctacacagg tgcacttaaa gatgagttgg taaagaccga
4021 taaagtttat ggtaaggtca agaagaggct tctatggggt tcagatctgg cgaccatgat
4081 acggtgcgcc cgagcttttg gaggcctcat ggatgaactc aaggcacact gtgtcacact
4141 ccctgtcaga gttggtatga acatgaatga ggatggcccc atcatcttcg agaagcactc
4201 cagatataga tatcattatg atgctgacta ttcccggtgg gactcaacac aacaaaggga
4261 tgtgctagca gcagcactag aaatcatggt taagttctct ccagaaccac acctggccca
4321 gatagttgca gaagacctcc tttcccctag cgtgatggat gtgggtgact ttcaaatatc
4381 aataagtgag ggtctcccct ctggggtgcc ttgcacctcc cagtggaatt ccatcgccca
4441 ctggctcctc actctgtgtg cactctctga agtcacggac ctatcccctg atatcattca
4501 ggccaactcc cttttctcct tctatggtga tgatgagatt gtaagcacag acataaagtt
4561 ggacccagag aggctaacag caaaactcaa ggagtacgga ctgaaaccaa cccgtcccga
4621 caaaactgaa ggaccccttg tcatctctga agacctggat ggtctgacat tcctccggag
4681 aactgtgacc cgtgatccag ctggctggtt tggaaaattg gaacaaagtt caattcttag
4741 gcaaatgtac tggaccaggg gtcccaacca tgaagaccca tttgaaacaa tgataccaca
4801 ctcccagaga cccatacaat tgatgtcctt gctgggcgag gctgcactcc acggcccggc
4861 attctacagc aaaattagca aattagtcat tgcagagttg aaggaaggtg gcatggattt
4921 ttacgtaccc agacaagagc caatgttcag atggatgaga ttctcagatc tgagcacgtg
4981 ggagggcgat cgcaatctgg ctcccagttt tgtgaatgaa gatggcgtcg agtgacgtca
5041 acccatctga tgggtccgca gccaacctcg tcccagaggt caacaatgag gttatggctc
5101 tggagcccgt tgttggtgcc gccatcgcgg cacctgtagc gggccaacaa aatgtaattg
5161 acccctggat tagaaacaat tttgtacaag cccctggtgg agagtttaca gtatccccta
5221 gaaacgctcc aggtgaaata ctatggagcg cgcccttggg ccctgatcta aatccctact
5281 tgtcccattt ggccagaatg tacaatggtt atgcaggtgg ttttgaagtg caggtaattc
5341 tcgcggggaa cgcgttcacc gccgggaagg tcatatttgc agcagtccca ccaaattttc
5401 caactgaagg cttgagcccc agccaggtca ctatgttccc ccatatagta gtagatgtta
5461 ggcaactaga acctgtgttg attcccttac ccgatgttag gaataatttc tatcattaca
5521 atcaatcaaa tgaccccacc attaagttga tagcaatgtt gtacacacca cttagggcta
5581 ataatgctgg ggatgatgtc ttcacagttt cttgccgagt tctcacgaga ccatcccccg
5641 attttgactt catatttcta gtgccaccca cagttgagtc aagaactaaa ccattctctg
5701 tcccagtttt gactgttgag gagatgacca attcaagatt ccccattcct ttggaaaagt
5761 tgttcacggg tcccagcagt gcctttgttg tccaaccaca aaacggtagg tgcacgactg
5821 atggcgtgct cctaggcacc acccaactgt ctcctgtcaa catctgcacc tttagaggag
5881 atgtcaccca tatcacaggt agtcataact atacaatgaa tttggcttct caaaattgga
5941 gcaactacga cccaacagaa gaaatcccag cccctctagg gactccagac tttgtgggga
6001 agattcaagg tatgcttacc caaaccacaa ggacagatgg ctcaacacgc ggccacaaag
6061 ccacagtgta cactgggagc gccgactttg ctccaaaact gggtagagtt caatttgaaa
6121 ctgacacaaa caatgatttt gaagctaacc aaaacacaaa gttcacccca gttggtgtca
6181 tccaagatgg tggcaccacc caccgaaatg aaccccaaca gtgggtgctc ccaagttact
6241 caggcaggaa cactcctaat gtgcatctag cccccgctgt ggccccaact tttccgggtg
6301 agcaactcct cttctttaga tccaccatgc ccggatgcag cgggtacccc aacatggatt
6361 tggattgtct gctcccccag gaatgggtgc agtacttcta ccaggaggca gccccagcac
6421 aatctgatgt ggctctgcta agatttgtga atccagacac aggtagggtt ttgtttgaat
6481 gtaagcttca caaatcaggc tatgttacag tggctcacac cggccaacat gatttggtta
6541 tcccccccaa tggttatttt aggtttgatt cctgggtcaa ccagttttac acgcttgccc
6601 ccatgggaaa tggagcgggg cgtagacgtg cactataatg gctggagctt tctttgctgg
6661 attggcatct gatgtccttg gctctggact tggttccctt atcaatgctg gggctggggc
6721 catcaaccaa aaagttgagt ttgaaaataa cagaaaattg caacaagcat ccttccaatt
6781 tagcagcaat ctacaacagg cttcctttca acatgacaaa gagatgctcc aagcacaaat
6841 tgaggctacc aaaaggttac aacaggaaat gatgaaagtt aagcaggcag tgctcctaga
6901 gggtgggttc tctgagacag atgcagcccg cggggcaatt aacgccccta tgacaaaagc
6961 cttggactgg agcgggacaa ggtactgggc tcctgatgct aggactacaa catacaatgc
7021 aggccgcttt tccacccccc aaccatcggg ggcgctgcca ggaagagcta attttaggga
7081 tgctgtccct gctcggggtt cctctagtaa gtcttctaat tcttctatcg ctacttctgt
7141 gtattcaaat caaactactt caacgagact tggttctaca gctggttctg gtaccagtgt
7201 ctcgagcttc ccgacaactg caaggactag gagctgggtt gaggaccaaa gtaggaattt
7261 gtcacctttc atgagggggg cccacaacat atcgtttgtc accccaccat ctagcaggtc
7321 ctctagccaa ggcacagtct caaccgtgcc taaagagatt ttggactcct ggactggcgc
7381 tttcaacacg cgcaggcagc cactcttcgc tcacattcgt aagcgagggg agtcacgggt
7441 gtaatgtgaa aagacaaaaa
//