Typing tool
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Typing tool
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Complete norovirus genomes
| OM373207 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5040
ORF2: 5021..6643
ORF3: 6643..7444
LOCUS OM373207 7444 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS236 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM373207
VERSION OM373207.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7444)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7444)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7444
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS236"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Dec-2018"
/note="genotype: GII"
gene <1..5040
/gene="ORF1"
CDS <1..5040
/gene="ORF1"
/codon_start=1
/product="nonstructural polyprotein"
/protein_id="UJP32602.1"
/translation="AKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPPRPPTPEL
VKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLNQRESRDAK
EPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFWRPVYTPQ
YLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFRPYQDW
NRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATCDWTFAGI
VESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGIGLVLGFT
KEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLD
LEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTINSLLARIAA
ARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRN
GVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDA
IIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSPDF
SHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPALTT
FNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIKKCQIVYN
GGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQ
IAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSSDDIKTEG
KKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVAI
ARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDFKPKGKLW
ADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAKEFFGV
PIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGELMPLAAR
MGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHT
AAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTTP
LPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAAKKTIINV
LEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMF
EEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGLMDELKAH
CVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALEIMVKFSP
EPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTLCALSEVT
DLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTEGPLVISE
DLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHSQRPIQLM
SLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNL
APSFVNEDGVE"
mat_peptide <1..930
/gene="ORF1"
/product="p48"
mat_peptide 931..2028
/gene="ORF1"
/product="NTPase"
mat_peptide 2029..2565
/gene="ORF1"
/product="p22"
mat_peptide 2566..2964
/gene="ORF1"
/product="VPg"
mat_peptide 2965..3507
/gene="ORF1"
/product="Pro"
mat_peptide 3508..5037
/gene="ORF1"
/product="RdRp"
gene 5021..6643
/gene="ORF2"
CDS 5021..6643
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP32603.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6643..>7444
/gene="ORF3"
CDS 6643..>7444
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP32604.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESR"
ORIGIN
1 gcaaaatctt caagtgacgg tgtgttttct aacatggctg tcacttttaa gcgggccctc
61 ggggcgcggc ctaaacaacc gcccccgaag gaaataccac ccagaccccc gcgaccaccc
121 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga tgaactagtg
181 gtctcttaca acgccaaaga tggcgtttcc ggactgcctg agctcaccac tgtcagacaa
241 ccggaagaaa ccaacacggc gttcagtgtc cccccactca accaaaggga gagcagggac
301 gccaaggagc cactaactgg gacaatcatt gaaatgtggg atggagaaat ctaccattac
361 ggcctgtacg tggaacgagg tcttatactt ggtgtgcaca agccaccagc agccatcagc
421 ctcgctaagg tcgagctggc accactctct ttgttctgga gacctgtata caccccccag
481 taccttatct ctccagacac tcttaggaga ttacatggag agtcattccc ctacactgca
541 tttgacaaca attgctacgc cttttgttgt tgggtattag acctaaacga ctcatggcta
601 agcaggagaa tgattcagag aacaacaggc ttctttaggc cgtaccagga ttggaacagg
661 aaacccctcc ccactatgga tgattccaaa ttaaagaagg tagccaacat atttttgtgc
721 actttgtctt cactattcac caggcccatc aaggacataa tagggaagtt gaaacctctc
781 aacatcctta atattctggc tacatgtgat tggaccttcg caggcatagt ggaatcctta
841 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
901 gcccccttgc taggtgatta tgaactgcaa ggacccgagg accttgcagt ggaactggtc
961 ccaatagtga tgggagggat aggtttggtt ctaggattta ccaaagagaa gatcggaaag
1021 atgctgtcat cagctgcatc cactttaaga gcttgtaaag accttggtgc atacggactg
1081 gaaatcttaa aattggtcat gaagtggttc ttcccaaaga aagaggaagc aaatgaactg
1141 gctatggtga gatccatcga ggatgcagta ctagacctcg aggcaattga aaacaaccac
1201 atgaccaccc tgctcaaaga caaagacagc ttgacaacct acatgagaac ccttgacctt
1261 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca
1321 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa
1381 gagctctcca gcaggccgag acctgtcgtt gtaatgatat cgggaagacc agggataggg
1441 aaaactcacc ttgccaggga gctggccaag aagatcgcgg cctccctcac aggggaccag
1501 cgtgtgggcc ttatcccacg caatggtgtc gaccactggg acgcatacaa gggcgaaagg
1561 gttgtcctat gggacgacta tggaatgagc aaccccatcc atgatgccct taggttgcag
1621 gagcttgctg acacttgccc cctcacgcta aattgtgaca gaattgagaa caaaggaaaa
1681 gtctttgaca gtgacgccat aattatcacc accaacctgg ccaacccagc accactggat
1741 tatgtcaact ttgaagcgtg ctcgagacgc attgatttcc tcgtgtacgc agaagcccct
1801 gaggtggaga aggcaaagcg cgacttccca ggtcaacctg acatgtggaa gaacgctttc
1861 agtcctgact tctcacacat aaaactgtca ttggctccac agggtggttt tgacaagaac
1921 ggcaacaccc cgcatggaaa aggggtcatg aagaccctca ccactggctc cctcatcgcc
1981 cgagcatcag ggttactcca tgagaggcta gatgaatatg aattgcaagg cccagccctc
2041 accactttca actttgaccg caacaagata cttgctttta gacagctcgc tgctgaaaac
2101 aagtatgggc tgatggacac aatgagagtt ggaaaacagc tcaaggatgt caagactatg
2161 tcagacctca aacaggcact caagaacatc gcgatcaaga agtgccagat agtgtacaat
2221 ggtggcacct acacacttga ggctgatggc aagggcagtg tgaaagttga caaagtgcaa
2281 agtgccactg tgcagaccaa caatgaacta gccggtgccc tacaccacct aagatgcgct
2341 agaatcagat actatgttaa gtgcgtccag gaggcactgt attccatcat ccaaatcgct
2401 ggggctgcat tcgtcaccac gcgcatcgct aagcgcatga atatacagaa tctctggtcc
2461 aagccacagg tggaagacac agaagagatg gccaacaaag atggttgcct aaaacccaaa
2521 gatgatgaag agtttgtcgt ttcatccgac gacatcaaaa ctgagggcaa gaaagggaag
2581 aacaagtccg gccgcggcaa gaagcacaca gccttttcaa gtaaagggct cagtgatgag
2641 gagtatgatg agtacaagag aatcagagaa gaaaggaatg gtaagtactc catagaagag
2701 taccttcagg acagagacag gtactacgag gaggtggcca ttgccagggc aaccgaagag
2761 gacttctgtg aagaggagga ggccaaaatc cggcagagga ttttcagacc aacaaggaaa
2821 caacgcaaag aagagagggc ttctctcggc ttggtcacag gctctgaaat caggaagaga
2881 aacccagaag acttcaaacc caagggaaag ctgtgggctg atgacgacag aagtgttgac
2941 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt
3001 ggttcaggct ggggcttctg ggtctccccc agtctgttta taacatcaac ccatgtcata
3061 ccccaaggtg caaaggagtt cttcggagtc cctatcaagc aaatccagat acacaagtca
3121 ggtgaattct gccgattgag attcccaaag ccaatcagaa ccgatgtgac gggcatgatt
3181 ctagaagaag gtgcgcccga ggggaccgtg gccacactgc tcatcaagag accaactgga
3241 gagctcatgc ctctggcagc cagaatgggg acccatgcaa ccatgaaaat tcaggggcgc
3301 acagttggag ggcaaatggg tatgctcctg acaggatcca acgccaagag tatggaccta
3361 ggcacaacac caggcgactg cggctgcccc tacatctaca agagggggaa tgactacgtg
3421 gtcatagggg tccatacggc tgctgcccgt ggaggaaaca ctgtcatatg tgccacccag
3481 ggaagtgagg gagaggccac acttgaagga ggtgacagta aagggacata ctgtggcgca
3541 ccaatcttgg gcccagggag cgctccgaag ctcagcacca agaccaagtt ttggagatca
3601 tccacaacac cactcccacc tggcacctac gaaccagcct acctcggtgg caaagaccct
3661 agagtcaaag gtggcccttc actgcaacaa gttatgaggg accagctgaa gccattcaca
3721 gaacccagag gcaaaccacc aagaccaaat gtgttggaag ctgccaagaa aaccatcatc
3781 aatgtccttg agcaaacaat tgatccaccc caaaaatggt catttgcgca ggcttgcgca
3841 tcccttgaca aaaccacctc cagcggccac ccgcaccaca tgcggaaaaa cgactgttgg
3901 aatggggagt ccttcacagg aaagttggct gaccaagcct ccaaggccaa cctaatgttt
3961 gaagagggaa agaacatgac tccagtctac acaggtgcac ttaaagatga gttggtaaag
4021 accgataaag tttatggtaa ggtcaagaag aggcttctat ggggttcaga tctggcgacc
4081 atgatacggt gcgcccgagc ttttggaggc ctcatggatg aactcaaggc acactgtgtc
4141 acactccctg tcagagttgg tatgaacatg aatgaggatg gccccatcat cttcgagaag
4201 cactccagat atagatatca ttatgatgct gactattccc ggtgggactc aacacaacaa
4261 agggatgtgc tagcagcagc actagaaatc atggttaagt tctctccaga accacacctg
4321 gcccagatag ttgcagaaga cctcctttcc cctagcgtga tggatgtggg tgactttcaa
4381 atatcaataa gtgagggtct cccctctggg gtgccttgca cctctcagtg gaattccatc
4441 gcccactggc tcctcactct gtgtgcactc tctgaagtca cggacctgtc ccctgatatc
4501 attcaggcca actccctttt ctccttctat ggtgatgatg agattgtaag cacagacata
4561 aagttggacc cagagaggtt aacagcaaaa ctcaaggagt acgggctgaa accaacccgc
4621 cccgacaaaa ctgaaggacc cctcgtcatc tctgaagacc tggatggtct gacattcctc
4681 cggagaactg tgacccgtga tccagctggc tggtttggaa aattggaaca aagttcaatt
4741 cttaggcaaa tgtactggac caggggtccc aaccatgaag acccatttga aacaatgata
4801 ccacactccc aaagacccat acaattgatg tccttgctgg gcgaggctgc actccacggc
4861 ccggcattct acagcaaaat cagcaaatta gtcattgcag agttgaagga aggtggcatg
4921 gatttttacg tacccagaca agagccaatg ttcaggtgga tgagattctc agatctgagc
4981 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
5041 cgtcaaccca tctgatgggt ccgcagccaa cctcgtccca gaggtcaaca atgaggttat
5101 ggctctggag cccgttgttg gtgccgccat tgcggcacct gtagcgggcc aacaaaatgt
5161 aattgacccc tggattagaa acaattttgt acaagcccct ggtggagagt ttacagtatc
5221 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttgggccctg atctaaatcc
5281 ctacttgtct catttggcca gaatgtacaa tggttatgca ggtggttttg aagtgcaggt
5341 aattctcgcg gggaacgcgt tcaccgccgg gaaggtcata tttgcagcag tcccaccaaa
5401 tttcccaact gaaggcttga gccccagcca ggtcactatg ttcccccata tagtagtaga
5461 tgttaggcaa ctagaacctg tgttgattcc cttacccgat gttaggaata atttctatca
5521 ttataatcaa tcaaatgatc ccaccattaa gttgatagca atgttgtata caccacttag
5581 ggctaataat gctggggatg atgtcttcac agtctcttgc cgagttctca cgagaccatc
5641 ccccgatttt gacttcatat ttctagtgcc acccacagtt gagtcaagaa ctaaaccatt
5701 ctctgtccca gttttaactg ttgaggagat gaccaattca agattcccca ttcctttgga
5761 aaagttgttc acgggtccca gcagtgcctt tgttgtccaa ccacaaaacg gtaggtgcac
5821 gactgatggc gtgctcctag gcaccaccca actgtctcct gtcaacatct gcacctttag
5881 aggagatgtc acccatatca caggtagtca taactataca atgaatttgg cttctcaaaa
5941 ttggagtaac tacgacccaa cagaagaaat cccagcccct ctagggactc cagactttgt
6001 ggggaagatt caaggcatgc ttacccaaac cacaaggaca gatggctcaa cacgcggcca
6061 caaagccaca gtgtacactg ggagcgccga ctttgctcca aaactgggta gagttcaatt
6121 tgaaactgac acaaacaatg attttgaagc taaccaaaac acaaagttca ccccagttgg
6181 tgtcatccaa gatggtggca ccacccatcg aaatgaaccc caacagtggg tactcccaag
6241 ttactcaggc aggaacactc ctaatgtgca tctggccccc gctgtggccc ccacttttcc
6301 gggtgagcaa ctcctcttct ttagatccac catgcccgga tgcagcgggt accccaacat
6361 ggatttggat tgtctgctcc cccaggaatg ggtgcagtac ttctaccagg aggcagcccc
6421 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttttgtt
6481 tgaatgtaag cttcataaat caggctatgt tacagtggct cacactggcc aacatgattt
6541 ggttatcccc cccaatggtt attttaggtt tgattcctgg gtcaaccagt tttacacgct
6601 tgcccccatg ggaaatggag cggggcgtag acgtgcacta taatggctgg agctttcttt
6661 gctggattgg catctgatgt ccttggctct ggacttggtt cccttatcaa tgctggggct
6721 ggggccatca accaaaaagt tgagtttgaa aataacagaa aattgcaaca agcatccttc
6781 caatttagca gcaatctaca acaggcttcc tttcaacatg acaaagagat gctccaagca
6841 caaattgagg ctaccaaaag gttacaacag gaaatgatga aagttaagca ggcaatgctc
6901 ctagagggtg ggttctctga gacagatgca gcccgcgggg caatcaacgc ccctatgaca
6961 aaagccttgg actggagcgg gacaaggtac tgggctcctg atgctaggac tacaacatac
7021 aatgcaggcc gcttttccac cccccaacca tcaggggcgc tgccaggaag agctaatttt
7081 agggatgctg tccctgctcg gggttcctct agtaagtctt ctaattcttc tactgctact
7141 tctgtgtatt caaatcaaac tacttcaacg agacttggtt ctacagctgg ttctggtacc
7201 agtgtctcga gcttcccgtc aactgcaagg actaggagct gggttgagga ccaaagtagg
7261 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc
7321 aggtcctcta gccaaggcac agtctcaacc gtgcctaaag agattttgga ctcctggact
7381 ggcgctttca acacgcgcag gcagccactc ttcgctcaca ttcgtaagcg aggggagtca
7441 cggg
//