Typing tool
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Typing tool
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Complete norovirus genomes
| OM373201 | GII.3 | |
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| GII.P12 |
ORF1: 1..4924
ORF2: 4905..6551
ORF3: 6551..7305
LOCUS OM373201 7305 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS209 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM373201
VERSION OM373201.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7305)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7305)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7305
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS209"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..4924
/gene="ORF1"
CDS <1..4924
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP32599.1"
/translation="PTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDE
TNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISL
AKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSW
LCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKV
RPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDL
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELA
KKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCP
LTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMS
ELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLRC
ARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCP
KPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGK
YSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVT
GSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPS
LFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGT
VVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDC
GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGP
GSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPR
GRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWN
GESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLA
TMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDS
TQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTS
QWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKE
YGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPN
HEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEP
MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..814
/gene="ORF1"
/product="p48"
mat_peptide 815..1912
/gene="ORF1"
/product="NTPase"
mat_peptide 1913..2449
/gene="ORF1"
/product="p22"
mat_peptide 2450..2848
/gene="ORF1"
/product="VPg"
mat_peptide 2849..3391
/gene="ORF1"
/product="Pro"
mat_peptide 3392..4921
/gene="ORF1"
/product="RdRp"
gene 4905..6551
/gene="ORF2"
CDS 4905..6551
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP32600.1"
/translation="MKMASSDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESDDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6551..>7305
/gene="ORF3"
CDS 6551..>7305
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP32601.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRAAPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGES"
ORIGIN
1 gcccacccca gaactggtca aaaagatccc tcctccccca cccaatgggg aggatgaact
61 agtggtctct tatagcgcca aagatggcgt ttctggtttg cctgaactta ccactgtctg
121 gcaaccggat gagaccaaca cggcattcag tgttccccct ctcaaccaga gggagaacag
181 ggacgccaag gagccgctga ccggaacaat cctagaaatg tgggacgggg agatctatca
241 ttatggtctg tatgtggagc gaggccttgt acttggtgtg cacaaaccac cagctgccat
301 cagcctcgcc aaggttgaac tagcaccact ctctctgttt tggaggccag tgtacacacc
361 acagtatctc atctctccag acactcttag gagactgcat ggagagtcgt tcccctacac
421 agcctttgac aacaactgct atgccttctg ttgttgggtt ttggacctaa acgactcgtg
481 gttgtgcagg agaatgatcc agagaacaac tggcttcttc agaccttacc aagaatggaa
541 caggaaaccc ctccccacca tggatgactc taaattgaag aaggtagcca acatattctt
601 gtgtgcgcta tcttcgctat tcactaggcc cattaaagac ataataggaa aggtgagacc
661 gctcaacatc cttaacatcc tggcctcatg tgattggact tttgcaggca tagtggaatc
721 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
781 gatcgccccc ttactaggtg actacgaact gcaggggcct gaggaccttg cagtggagct
841 cgtaccagta gtaatgggag ggattggttt ggtgttagga ttcaccaaag agaagatcgg
901 aaaaatgttg tcatccgctg cttccacctt aagagcttgt aaagaccttg gtgcatacgg
961 gctggaaatc ctaaaattgg tcatgaaatg gttcttccca aagaaagagg aagcgaatga
1021 gctagctatg gtgaggtcca tcgaggatgc ggtgctggat ctcgaagcaa ttgagaacaa
1081 ccacatgact gccctcctca aagacaaaga cagcttggca acctatatga ggacccttga
1141 cctcgaggag gagaaagcca ggaagctttc aaccaagtct gcttcacctg acatcgtggg
1201 cacaattaac gccctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
1261 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggta ggccagggat
1321 agggaaaact caccttgcca gggagctggc caagaagatt gcagcttcac tcacagggga
1381 ccagcgcgtg ggtctcatcc ctcgcaatgg cgttgaccac tgggacgcat ataagggaga
1441 aagagtcgtc ctgtgggacg attatggaat gagcaatccc atccacgacg ccctcaggtt
1501 acaggaactt gctgacacct gtccccttac gctaaactgt gacaggattg agaacaaagg
1561 aaaggtcttt gatagtgatg ccataatcat caccactaat ctagccaacc cagcaccatt
1621 ggactatgtc aactttgaag catgctcgag gcgcattgac ttcctcgtgt acgcagaagc
1681 ccctgaggtc gagaaagcaa agcgtgattt cccaggtcaa cctgacatgt ggaagaacgc
1741 atttagctct gacttctcgc acataaaact ggcgctggct ccgcagggtg gtttcgacaa
1801 gaacgggaac accccacacg ggaaaggcgt catgaaaacc ctcactactg gttccctcat
1861 cgcccgagca tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
1921 tcccaccacc tttaattttg accgcaacaa ggtgcttgcg ttcagacaac ttgctgccga
1981 aaacaagtat ggattgttgg acacaatgag agttggaaaa cagctcaagg atgttaagac
2041 catgtcagag ctcaaacagg cactcaagaa tgtcgcaatc aagagttgtc agatagtgta
2101 tggtggctgc acctacaggc ttgagtctga tggcaagggt gatgtaaaag ttgacagagt
2161 tcagaacgtc actgtacaga ccaacaatga gcttgccggc gcattacacc atcttaggtg
2221 cgccagaatc agatattatg tcaagtgtgt tcaggaggcc ctgtattcca tcatccaaat
2281 cgctggggcc gcatttgtta ccacacgcat tgtcaagcgc atgaacatac aagatctctg
2341 gtccaagcca caggtggagg acacagagga aatcgctagc aaggatgggt gcccaaaacc
2401 ccaggatgat gaagagtttg ttgtctcatc cgatgacatc aaaaccgagg gcaagaaagg
2461 gaagaacaaa tctggccgtg gcaagaagca cacagcattt tcaagtaaag gtctcagtga
2521 tgaagagtac gatgagtaca aaagaattag agaagaaaga aatggcaaat actccataga
2581 ggaatacctc caggacagag acaggtatta tgaggaggtg gccatcgcca gggcaaccga
2641 agaggacttc tgtgaagaag aagaggccaa gatccgacag aggatcttca ggccaacaag
2701 gaaacaacgc aaagaggaga gagcctctct cggtttggtc acaggttctg aaattaggaa
2761 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgatg acaggagtgt
2821 tgactacaat gagaagctca actttgaagc cccaccaagc atctggtcga ggatagtcaa
2881 ctttggctca ggctggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
2941 cataccccag ggcgcacagg agttctttgg tgtacccatc aaacaaattc agatacataa
3001 atcaggtgaa ttctgccgct tgaggtttcc aaagccgatc agaactgatg tgacaggcat
3061 gatcttagaa gaaggtgcac ccgaaggaac cgtggtcaca ttactcatca aaagaccaac
3121 tggagagctc atgcccctgg cagccagaat gggaacccac gcaaccatga agatacaagg
3181 gcgcactgtt ggaggtcaaa tgggcatgct cctaacagga tccaacgcca agagtatgga
3241 cctgggcacc acaccaggtg actgtggctg cccctacatt tacaagaggg ggaatgacta
3301 cgtggtcatt ggggtccata cagcagccgc ccgtggagga aacactgtca tttgtgccac
3361 ccaggggagc gagggagaag ccacacttga aggcggtgat agcaagggga cctactgcgg
3421 agcaccaatc ttaggtccag gaagtgcccc aaaactcagc accaagacca aattctggag
3481 atcatccacg gcaccactcc cacctggcac ctatgaacca gcttaccttg gtggcaagga
3541 ccccagagtt aagggtggcc cttcactgca acaagttatg agggatcaac tgaaaccatt
3601 cactgagcct aggggtaggc caccaaaacc aagtgtgcta gaagctgcca agaaaaccat
3661 cgtcaatgtc ctagaacaga caattgaccc acctcaaaaa tggtcgtttg cgcaggcatg
3721 cgcatcccta gacaagacca cttctagcgg ccatccgcac cacatgcgga agaatgactg
3781 ctggaacggg gagtccttca caggaaaatt ggcagaccag gcttccaagg ccaacctgat
3841 gtttgaggag ggaaagaaca tgacaccagt ttacacgggt gcgcttaagg acgagctggt
3901 caagactgac aagatttatg gtaagatcaa aaagaggctt ctctggggtt cggacctggc
3961 gaccatgatt cggtgcgctc gagcattcgg gggtctgatg gaggaactca aagcacattg
4021 tgtcacacta cctgttaggg tgggtatgaa tatgaatgag gatggcccta tcatctttga
4081 gagacattcc agatataaat atcattatga tgctgactac tcccggtggg attcaacaca
4141 acaaagagcc gtgttggcag cagccttaga aatcatggtc aagttttccc cagagccaca
4201 cctggcccaa aaggttgcag aagaccttct ttctcccagc gtgatggacg tgggtgattt
4261 caaaatatca atcaatgagg gtctcccctc cggagtgccc tgcacctccc aatggaattc
4321 catcgcccac tggctcctca ctctctgtgc actctctgag gttacaaacc tgtcccctga
4381 cattattcag gccaactccc tcttttcttt ctacggtgat gatgaaattg tgagtacaga
4441 tataaaattg gacccagaaa aactgacagc aaaactcaag gaatacgggt tgaaaccgac
4501 ccgccctgac aaaactgaag ggcctcttgt catttccgaa gacctgaatg gcctaacctt
4561 cctgcggagg accgtgactc gcgacccagc aggctggttt ggaaagttgg aacagagctc
4621 aatactcaga caaatgtact ggactagggg ccccaatcat gaagatccat ctgaaacaat
4681 gataccacac tcccagaggc ccatacaatt gatgtctttg ctgggcgagg cagcactcca
4741 cggcccagca ttctacagca aaatcagcaa attggtcatt gcagagttga aggagggtgg
4801 catggatttt tacgtgccaa gacaagaacc aatgttcaga tggatgagat tctcggatct
4861 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
4921 gtgacgccgc cccatctaat gatggtgccg ccggcctcgt cccagagatc aacaatgagg
4981 caatggcgct agatccagtg gcgggtgcag cgatagcagc acccctcacc ggccagcaaa
5041 atataattga tccctggatt atgaataatt ttgtgcaagc acctggtggt gagttcacag
5101 tgtctcctag gaattcccct ggtgaagtgc tcctcaattt ggaattgggc ccagagataa
5161 acccctatct ggcccatctt gctagaatgt ataatggtta tgcaggtggg tttgaagtgc
5221 aggtagtcct ggctggaaat gcgtttacag caggaaagat aatctttgca gctatacccc
5281 ctaacttccc aattgacaat ctaagtgcag cacagatcac aatgtgccca catgtgattg
5341 tggatgtcag gcagctagaa ccagtcaacc tcccgatgcc tgacgttcgc aataacttct
5401 tccactacaa ccaagggtct gattcgagat tgcgcttggt tgcaatgctg tatacacctc
5461 ttagggcaaa taactctggg gatgatgttt tcactgtgtc ttgtagagtg ctgactagac
5521 ctagtcctga attttcattt aacttccttg tgccacccac tgtggagtca aagacaaaac
5581 cctttaccct cccaattctg actatttctg aaatgtctaa ttctaggttt ccagtgccga
5641 ttgattctct gcacaccagc ccaactgaga atattgttgt ccagtgtcaa aatggacgcg
5701 tcactcttga tggtgagttg atgggcacca ctcagctcct acctagtcaa atctgtgctt
5761 tcaggggcgt gctcactaga tcaacaagca gagctagtga ccaggccgac acagcaaccc
5821 ctagattgtt caattattat tggcatatac aattggataa tctaaatggg actccttatg
5881 atcctgcaga agacatacca ggccccctag ggacaccaga ttttcggggt aaagtctttg
5941 gcgtggccag ccaaagaaac cccgacagta caactagagc acatgaagca aaggtggaca
6001 caacagctgg tcgcttcacc ccaaaactag gctcattaga gatatccact gaatctgatg
6061 actttgacca aaaccaacca acaagattca ccccagttgg cattggggtt gaccatgagt
6121 cagatttcca gcaatggtcc ttacccgact actctggtca gttcactcac aacatgaact
6181 tagccccagc tgttgccccc aatttccctg gtgagcagct ccttttcttc cgctcacagt
6241 taccatcttc tggtgggcga tccaatggga ttctagattg cctggtcccc caagaatggg
6301 tccagcactt ctaccaagaa tcagcccccg cccaaaccca ggtggctctg gttagatatg
6361 tcaaccctga cactggtaga gtgctgtttg aggccaagct gcacaaatta ggtttcatga
6421 ctatagctaa gaatggtgat tctccaataa ctgtcccccc aaatggatac tttaggtttg
6481 aatcttgggt gaacccattt tatacactcg cccccatggg aactgggaat gggcgtagaa
6541 gggttcaata atggctggtg cttttatagc aggattagct ggtgatatat tcacaaatac
6601 tgtagggtct ttagttaatg caggggctaa tgctattaat caaaaagttg attttgaaaa
6661 taataaatat ttgcaaaatg cttccttcaa ccatgataag gaaatgttga atgcacagat
6721 tgaggcaaca aagagattac aggctgatat gattgctatc aaacaggggg ttttgaccgc
6781 aggcggcttt tcccccactg atgcagctcg tggggcaatc aacgccccca tgacaaaagt
6841 cctagattgg aatggaacaa ggtactgggc accaagtgcc acctctacga cctcgatgtc
6901 gggtggcttc acaaaccagg ctgtgcacag aaccacgcca aattttaaaa tgaaccaggc
6961 ccccagagcc gcacccagca gtgggtcttc agtgaggtca ctctcaaccc aagtcactag
7021 tctgagctca cactcgtccg ggtcgtctcg gtccagcggg tctacagttg ctagctcatt
7081 accatcctct aataggacta gggactgggt caatcagcaa aatttcaatt tggaaccaca
7141 catgcctggg tcacttagga cagcttttgt cactccacca tctagtacag cctctagttc
7201 aggcactgtc tcaaccgtgc ccaaaaatgt tttggactcc tggacatctg cgtttaacac
7261 gcgcagacag ccgctattcg cacaccttcg tagaaggggg gagtc
//