Typing tool
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Typing tool
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Complete norovirus genomes
| OM373200 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5078
ORF2: 5059..6681
ORF3: 6681..7487
LOCUS OM373200 7526 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS203 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM373200
VERSION OM373200.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7526)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7526)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7526
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS203"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5078
/gene="ORF1"
CDS <1..5078
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP32596.1"
/translation="SAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEI
PPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSV
PPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAP
LSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQ
RTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILN
ILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPI
VMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLIMKWFFPKKEEANEL
AMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIV
GTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASL
TGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDR
IENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQ
PDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERL
DEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALK
NIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYV
KCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEE
FVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYL
QDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKR
NPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTH
VIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIK
RPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYK
RGNDYVVIGVHTAAARGGNTVICATQGNEGEATLEGGDSKGTYCGAPILGPGSAPKLS
TKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPN
VLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGK
LADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCAR
AFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVL
AAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAH
WLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTR
PDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFET
MIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRF
SDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..968
/gene="ORF1"
/product="p48"
mat_peptide 969..2066
/gene="ORF1"
/product="NTPase"
mat_peptide 2067..2603
/gene="ORF1"
/product="p22"
mat_peptide 2604..3002
/gene="ORF1"
/product="VPg"
mat_peptide 3003..3545
/gene="ORF1"
/product="Pro"
mat_peptide 3546..5075
/gene="ORF1"
/product="RdRp"
gene 5059..6681
/gene="ORF2"
CDS 5059..6681
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP32597.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6681..7487
/gene="ORF3"
CDS 6681..7487
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP32598.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGTINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 cttccgctgc cgctgttgcc aacagcaaca acgacatcgc aaaatcttca agtgacggtg
61 tgttttctaa catggctgtc acttttaagc gggccctcgg ggcgcggcct aaacagccgc
121 ccccgaagga aataccaccc agacccccgc gaccacccac accagaattg gtcaaaaaga
181 tccctcctcc cccacccaac ggggaggatg aactagtggt ctcttacaac gccaaagatg
241 gcgtttccgg actgcctgag ctcaccactg tcagacaacc ggaagaaacc aacacggcgt
301 tcagtgtccc cccactcaac caaagggaga gcagggacgc caaggagcca ctaactggaa
361 caatcattga aatgtgggat ggagaaatct accattacgg cctgtacgtg gaacgaggtc
421 ttatacttgg tgtgcacaag ccaccagcag ccatcagcct cgctaaggtc gagctggcac
481 cgctctcttt gttctggaga cctgtataca ccccccagta ccttatctct ccagacactc
541 ttaggagatt acatggagag tcattcccct acactgcatt tgacaacaat tgctacgcct
601 tttgttgttg ggtattagac ctaaacgact catggctaag caggagaatg attcagagaa
661 caacaggctt ctttaggccg taccaggatt ggaacaggaa acccctcccc actatggatg
721 attccaaatt aaagaaggta gccaacatat ttttgtgcac tttgtcttca ctattcacca
781 ggcccattaa ggacataata gggaagttga aacctctcaa catccttaat attctggcta
841 catgtgattg gaccttcgca ggcatagtgg aatccttaat actcttggca gaactctttg
901 gagttttctg gacaccccca gatgtgtctg cgatgatcgc ccccttgcta ggtgattatg
961 aactgcaagg acccgaggac cttgcagtgg aactggtccc aatagtgatg ggggggatag
1021 gtttggtgct aggatttacc aaagagaaga tcggaaagat gctgtcatcc gctgcatcca
1081 ctttaagagc ttgtaaagac cttggtgcat acggactgga aatcttaaaa ttgatcatga
1141 agtggttctt cccaaagaaa gaggaagcaa atgaactggc tatggtaaga tccatcgagg
1201 atgcagtact agacctcgag gcaattgaaa acaaccacat gaccaccctg ctcaaagaca
1261 aagacagctt gacaacctac atgagaaccc ttgaccttga ggaggagaaa gccagaaaac
1321 tctcaaccaa atctgcttca cccgatattg tgggcacaat caactctctt ctggcaagaa
1381 tcgctgctgc acgctcccta gtgcatcggg cgaaagaaga gctctccagc aggccgagac
1441 ctgtcgttgt aatgatatcg ggaagaccag ggatagggaa aactcacctt gccagggagc
1501 tggccaagaa gatcgcggcc tccctcacag gggaccagcg tgtgggcctt atcccacgca
1561 atggtgtcga ccactgggac gcatacaagg gcgaaagggt tgtcctatgg gacgactatg
1621 gaatgagcaa ccccatccat gatgccctta ggttgcagga gcttgctgac acttgccccc
1681 tcacgctaaa ttgtgacaga attgagaaca aaggaaaagt ctttgacagt gatgccataa
1741 ttatcaccac caacctggcc aacccagcac cactggatta tgtcaacttt gaagcgtgct
1801 cgagacgcat tgatttcctc gtgtacgcag aagcccctga ggtggagaag gcaaagcgcg
1861 acttcccagg tcaacctgac atgtggaaga acgctttcag tcctgacttc tcacacataa
1921 aactgtcatt ggctccacag ggtggttttg acaagaacgg caacaccccg catggaaaag
1981 gggtcatgaa gaccctcacc actggctccc tcatcgcccg agcatcaggg ttactccatg
2041 agaggctaga tgaatatgaa ttgcaaggcc cagccctcac cactttcaac tttgaccgca
2101 acaagatact tgcttttaga cagcttgctg ctgaaaacaa gtatgggctg atggacacaa
2161 tgagagttgg aaaacagctc aaggatgtca agactatgtc agacctcaaa caggcactca
2221 agaacatcgc gatcaagaag tgccagatag tgtacaatgg tggcacctac acacttgagg
2281 ctgatggcaa gggcagtgtg aaagttgaca aagtacaaag tgccactgtg cagaccaaca
2341 atgaactagc cggtgcccta caccacctaa gatgcgctag aatcagatac tatgttaagt
2401 gcgtccagga ggcactgtat tccatcatcc aaatcgctgg ggctgcattc gtcaccacgc
2461 gcatcgctaa gcgcatgaat atacagaatc tctggtccaa gccacaggtg gaagacacag
2521 aagagatggc caacaaagat ggttgcctaa aacccaaaga tgatgaagag tttgtcgttt
2581 catccgacga catcaaaact gagggcaaga aagggaagaa caagtccggc cgtggcaaga
2641 agcacacagc cttttcaagt aaagggctca gtgatgagga gtacgatgag tacaagagaa
2701 tcagagaaga aaggaatggt aagtactcca tagaagagta ccttcaggac agagacaggt
2761 actacgagga ggtggccatt gccagggcaa ccgaagagga cttctgtgaa gaagaagagg
2821 ccaaaatccg gcagaggatt ttcagaccaa caaggaaaca acgcaaagaa gagagggctt
2881 ctctcggctt ggtcacaggc tctgaaatca ggaagagaaa cccagaagac ttcaaaccca
2941 agggaaagct gtgggctgat gacgatagaa gtgttgacta caatgagaaa ctcaactttg
3001 aggccccacc aagcatctgg tcgcggatag tcaactttgg ttcaggctgg ggcttctggg
3061 tctcccccag tctgtttata acatcaaccc atgtcatacc ccaaggtgca aaggagttct
3121 tcggagtccc tatcaagcaa atccagatac acaagtcagg tgaattctgc cgattgaggt
3181 tcccgaagcc aatcagaacc gatgtgacgg gcatgattct agaagaaggt gcgcccgagg
3241 ggaccgtggc cacactgctc atcaagagac caactggaga gctcatgcct ctggcagcca
3301 gaatggggac ccatgcaacc atgaaaattc aggggcgcac agttggaggg caaatgggta
3361 tgctcctgac aggatccaac gccaagagta tggacctagg cacaacacca ggcgactgcg
3421 gctgccccta catctacaag agggggaatg actacgtggt cataggggtc catacggctg
3481 ctgcccgtgg aggaaacact gtcatatgtg ccacccaggg aaatgaggga gaggccacac
3541 ttgaaggagg tgacagtaaa gggacatact gtggcgcgcc aatcttgggc ccagggagcg
3601 ctccgaagct cagcaccaag actaagtttt ggagatcatc cacaacacca ctcccacctg
3661 gcacctacga accagcctac ctcggtggca aagaccctag agtcaaaggt ggcccttcat
3721 tgcaacaagt tatgagggac cagctgaagc cattcacaga acccagaggc aaaccaccaa
3781 gaccaaatgt gttggaagct gccaagaaaa ccatcatcaa tgtccttgag caaacaattg
3841 atccacccca aaaatggtca tttgcgcaag cttgcgcatc ccttgacaaa accacctcca
3901 gcggccaccc gcaccacatg cggaaaaacg actgttggaa tggggagtcc ttcacaggaa
3961 agttggctga ccaagcctct aaggccaacc taatgtttga agagggaaag aacatgactc
4021 cagtctacac aggtgcactt aaagatgagt tggtaaagac cgataaagtt tatggtaagg
4081 tcaagaagag gctcttatgg ggttcagatc tggcgaccat gatacggtgc gcccgagctt
4141 ttggaggcct catggatgaa ctcaaggcac actgtgtcac actccctgtc agagttggta
4201 tgaacatgaa tgaggatggc cccatcatct tcgagaagca ctccagatat agatatcatt
4261 atgatgctga ctattcccgg tgggactcaa cacaacaaag ggatgtgcta gcagcagcac
4321 tagaaatcat ggttaagttc tctccagaac cacacctggc ccagatagtt gcagaagacc
4381 tcctttcccc tagcgtgatg gatgtgggtg actttcaaat atcaataagt gagggtctcc
4441 cctctggggt gccttgcacc tcccagtgga attccatcgc ccactggctc ctcactctgt
4501 gtgcactctc tgaagtcacg gacctgtccc ctgatatcat tcaagccaac tcccttttct
4561 ccttctatgg tgatgatgag attgtaagca cagacataaa gttggaccca gagaggctaa
4621 cagcaaaact caaggagtac gggctgaaac caacccgccc cgacaaaact gaaggacccc
4681 ttgtcatctc tgaagacctg gatggtctga cattcctccg gagaactgtg acccgtgatc
4741 cagctggctg gtttggaaaa ttggaacaaa gttcaattct taggcaaatg tactggacca
4801 ggggtcccaa ccatgaagac ccatttgaaa caatgatacc acactcccaa agacccatac
4861 aattgatgtc cttgctgggc gaggctgcac tccacggccc ggcattctac agcaaaatta
4921 gcaaattagt cattgcagag ttgaaggaag gtggcatgga tttttacgta cccagacaag
4981 agccaatgtt caggtggatg agattctcag atctgagcac gtgggagggc gatcgcaatc
5041 tggctcccag ttttgtgaat gaagatggcg tcgagtgacg tcaacccatc tgatgggtcc
5101 gcagccaacc tcgtcccaga ggtcaacaat gaggttatgg ctctggagcc cgttgttggt
5161 gccgccattg cggcacctgt agcgggccaa caaaatgtaa ttgacccctg gattagaaac
5221 aattttgtac aagcccctgg tggagagttt acagtatccc ctagaaacgc tccaggtgaa
5281 atactatgga gcgcgccctt gggccctgat ctaaatccct acttgtctca tttggccaga
5341 atgtacaatg gttatgcagg tggttttgaa gtgcaggtaa ttctcgcggg gaacgcgttc
5401 accgccggga aggtcatatt tgcagcagtc ccaccaaatt ttccaactga aggcttgagc
5461 cccagccagg ttactatgtt cccccatata gtagtagatg ttaggcaact agaacctgtg
5521 ttgattccct tacccgatgt taggaataat ttctatcatt acaatcaatc aaatgacccc
5581 accattaagt tgatagcaat gttgtataca ccacttaggg ctaataatgc tggggatgat
5641 gtcttcacag tttcttgccg agttctcacg agaccatccc ccgattttga cttcatattt
5701 ctagtgccac ccacagttga gtcaagaact aaaccattct ctgtcccagt tttgactgtt
5761 gaggagatga ccaattcaag attccccatt cctttggaaa agttgttcac gggtcccagc
5821 agtgcctttg ttgtccaacc acaaaacggt aggtgcacga ctgatggcgt gctcctaggc
5881 accacccaac tgtctcctgt caacatctgc acctttagag gagatgtcac ccatatcaca
5941 ggtagtcata actatacaat gaatttggct tctcaaaatt ggagcaacta cgacccaaca
6001 gaagaaatcc cagcccctct ggggactcca gactttgtgg ggaagattca aggcatgctt
6061 acccaaacca caaggacaga tggctcaaca cgcggccaca aagccacagt gtacactggg
6121 agcgccgact ttgctccaaa actgggtaga gttcaatttg aaactgacac aaacaatgat
6181 tttgaagcta accaaaacac aaagttcacc ccagttggtg tcatccaaga tggtggcacc
6241 acccatcgaa atgaacccca acagtgggta ctcccaagtt actcaggcag gaacactcct
6301 aatgtgcatc tggcccccgc tgtggccccc acttttccgg gtgagcaact cctcttcttt
6361 agatccacca tgcccggatg cagcgggtac cccaacatgg atttggattg tctgctcccc
6421 caggaatggg tgcagtactt ctaccaggag gcagccccag cacaatctga tgtggctctg
6481 ctaagatttg tgaatccaga cacaggtagg gttttgtttg aatgtaagct tcataaatca
6541 ggctatgtca cagtggctca cactggccaa catgatttgg ttatcccccc caatggttat
6601 tttaggtttg attcctgggt caaccagttt tacacgcttg cccccatggg aaatggagcg
6661 gggcgtagac gtgcactata atggctggag ctttctttgc tggattggca tctgatgtcc
6721 ttggctctgg acttggttcc cttatcaatg ctggggctgg gaccatcaac caaaaagttg
6781 agtttgaaaa taacagaaaa ttgcaacaag catccttcca atttagcagc aatctacaac
6841 aggcttcctt tcaacatgac aaagagatgc tccaagcaca aattgaggct accaaaaggt
6901 tacaacagga aatgatgaaa gttaagcagg caatgctcct agagggtggg ttctctgaga
6961 cagatgcagc ccgcggggca atcaacgccc ctatgacaaa agccttggac tggagcggga
7021 caaggtactg ggctcctgat gctaggacta caacatacaa tgcaggccgc ttttccaccc
7081 cccaaccatc gggggcgctg ccaggaagag ctaattttag ggatgctgtc cctgctcggg
7141 gttcctctag taagtcttct aattcttcta ctgctacttc tgtgtattca aatcaaacta
7201 cttcaacgag acttggttct acagctggtt ctggtaccag tgtctcgagc ttcccgtcaa
7261 ctgcaaggac taggagctgg gttgaggacc aaagtaggaa cttgtcacct ttcatgaggg
7321 gggcccacaa tatatcgttt gtcaccccac catctagcag gtcctctagc caaggcacag
7381 tctcaaccgt gcctaaagag attttggact cctggactgg cgctttcaac acgcgcaggc
7441 agccactctt cgctcacatt cgtaagcgag gggagtcacg ggtgtaatgt gaaaagacaa
7501 aattgattat ctttcttttc tttagt
//