Typing tool
|
Complete norovirus genomes
OM372682 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5093 ORF2: 5074..6696 ORF3: 6696..7448LOCUS OM372682 7448 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS192 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION OM372682 VERSION OM372682.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7448) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7448) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7448 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS192" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Nov-2018" /note="genotype: GII" gene <1..5093 /gene="ORF1" CDS <1..5093 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="UJP31648.1" /translation="ASNDASAAAVANSNNDIAKSSSDGMFSNMAVTFKRALGARPKQP PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPEETN TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV ELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSA SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGIMKTLTTGSLIARASGL LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL KQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKP KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE SFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATM IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ QRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYG LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF RWMRFSDLSTWEGDRNLAPSFVNEDGVE" mat_peptide <1..983 /gene="ORF1" /product="p48" mat_peptide 984..2081 /gene="ORF1" /product="NTPase" mat_peptide 2082..2618 /gene="ORF1" /product="p22" mat_peptide 2619..3017 /gene="ORF1" /product="VPg" mat_peptide 3018..3560 /gene="ORF1" /product="Pro" mat_peptide 3561..5090 /gene="ORF1" /product="RdRp" gene 5074..6696 /gene="ORF2" CDS 5074..6696 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP31649.1" /translation="MKMASSDANPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6696..>7448 /gene="ORF3" CDS 6696..>7448 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP31650.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANLRDAVPARGSSSRSS NSSTATSVYSNQTISTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNT" ORIGIN 1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat 61 cttcaagtga cggtatgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc 121 ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca cccacaccag 181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt 241 acagcgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga caaccggaag 301 aaaccaacac ggcgttcagt gtccccccac tcaaccaaag ggagagcagg gacgccaagg 361 agccattaac tggaacaatc attgaaatgt gggatggaga aatctaccat tacggcctgt 421 acgtggaacg aggtcttata cttggtgtgc acaagccacc agcagccatc agcctcgcca 481 aggtcgagct ggcaccgctc tctctgttct ggagacctgt atacaccccc cagtacctta 541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgata 601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctaagcagga 661 gaatgattca gagaacaaca ggcttcttca ggccgtacca ggattggaac aggaaacccc 721 tccccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt 781 cttcactatt cactaggccc attaaggaca taatagggaa gttgaaaccc ctcaacatcc 841 ttaatattct ggctacatgt gattggacct tcgcaggcat agtggaatcc ttaatactct 901 tagcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct 961 tgctaggtga ttatgaactg caaggacccg aggaccttgc agtggaactg gtcccaatag 1021 tgatgggggg gataggtttg gtgctaggat ttaccaaaga gaaaatcgga aagatgctgt 1081 catccgctgc atccactttg agagcttgta aagaccttgg tgcatacgga ctggaaatct 1141 taaaattggt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg 1201 tgagatccat cgaggatgca gtactagacc tcgaggcaat tgaaaacaac cacatgacca 1261 ccctgctcaa agacaaagac agcttgacaa cctatatgag aacccttgac cttgaggagg 1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acaatcaact 1381 ctcttctggc aaggattgct gctgcacgct ccctagtgca tcgagcgaaa gaagagctct 1441 ccagcaggcc gagacctgtc gttgtaatga tatcgggaag accaggtata gggaaaactc 1501 accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg 1561 gccttatccc acgcaatggt gtcgatcact gggacgcata caagggcgaa agagttgtcc 1621 tatgggacga ctatggaatg agcaacccca tccatgatgc cctcagattg caggagcttg 1681 ctgacacttg ccccctcacg ctaaattgtg acagaattga gaacaaggga aaagtctttg 1741 acagtgatgc cataattatc accaccaacc tggccaaccc agcaccactg gattatgtca 1801 actttgaagc gtgctcgaga cgcattgatt tcctcgtgta cgcagaagcc cctgaggtgg 1861 agaaggcgaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg 1921 acttctcaca cataaaacta tcgttggctc cacagggggg ttttgacaag aacggcaaca 1981 ccccgcacgg aaagggaatc atgaagaccc tcaccactgg ctccctcatc gcccgagcat 2041 cagggttact ccatgagagg ctagatgaat atgaattgca aggcccagcc ctcactactt 2101 tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg 2161 ggctgatgga cacaatgaga gttgggaaac agctcaagga tgtcaagact atgtcagacc 2221 tcaaacaagc actcaagaac atcgcgatca agaagtgcca gatagtgtac aatggtggca 2281 cctacacact tgaggctgat ggcaagggca gtgtgaaggt tgacaaagtg caaagtgcca 2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaagatgc gctagaatca 2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg 2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccaagccac 2521 aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc aaagatgatg 2581 aagagtttgt cgtttcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt 2641 ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat gaggagtacg 2701 atgagtacaa aagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc 2761 aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa gaggacttct 2821 gtgaagaaga agaggccaaa atccggcaga ggattttcag accaacaagg aaacaacgca 2881 aagaagagag ggcctctctc ggcttggtca caggctctga aatcaggaag agaaacccag 2941 aagatttcaa acccaaggga aagctgtggg ctgatgatga cagaagtgtt gactacaatg 3001 agaaactcaa ctttgaagcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag 3061 gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccagg 3121 gtgcaaaaga gttcttcgga gtccctatca agcaaatcca gatacacaag tcaggtgaat 3181 tctgtcgact gagattccca aagccaatca gaactgatgt gacgggcatg attctagaag 3241 aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca 3301 tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg 3361 gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagcatggac ctaggcacaa 3421 caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac gtggttatag 3481 gggtccatac ggccgctgcc cgcggaggaa acactgtcat atgtgccacc cagggaagtg 3541 agggagaggc cacactcgaa ggaggtgata gtaaggggac atactgtggc gcaccaatct 3601 tgggcccagg gagcgctccg aagctcagca ccaagactaa gttttggaga tcatccacaa 3661 caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac cctagagtca 3721 aaggtggccc ttcattgcaa caagttatga gagaccagct gaagccattc acagaaccca 3781 gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaagaccatc atcaatgtcc 3841 ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg 3901 acaagaccac ctccagcggc cacccgcacc acatgcggaa aaacgactgt tggaatgggg 3961 agtccttcac aggaaaattg gctgaccaag cctccaaggc caacctaatg tttgaagagg 4021 gaaagaacat gaccccagtc tacacaggtg cacttaaaga tgagttggtg aagaccgata 4081 aagtttatgg taaggtcaag aagaggcttc tgtggggttc agatctggcg accatgatac 4141 ggtgcgcccg agcttttgga ggcctcatgg atgaactcaa ggcacactgt gtcacgctcc 4201 ctgtcagagt tggtatgaac atgaatgagg atggccccat catctttgag aagcactcca 4261 gatatagata tcactatgat gctgactatt cccgatggga ctcaacacaa caaagggatg 4321 tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac ctggcccaga 4381 tagttgcaga agacctcctc tcccctagcg tgatggatgt gggtgacttt caaatatcaa 4441 taagtgaggg cctcccctct ggggtgcctt gtacctccca gtggaattcc atcgcccact 4501 ggctcctcac tctgtgtgca ctctctgaag tcacggacct gtcccctgat atcattcagg 4561 ccaactccct tttctccttc tatggtgatg atgagattgt aagcacagac ataaagttgg 4621 acccagagag gctgacagca aaactcaagg agtacgggct gaaaccaacc cgccccgaca 4681 aaactgaagg accccttgtt atctctgaag acctggatgg tctaacattc ctccggagaa 4741 ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca attcttaggc 4801 aaatgtactg gaccaggggt cccaaccatg aagatccatt tgaaacaatg ataccacact 4861 cccaaagacc catacaattg atgtctttgc tgggcgaggc tgcactccac ggcccggcat 4921 tctacagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc atggattttt 4981 atgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg 5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgccaac 5101 ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg 5161 gagcccgttg ttggtgccgc tattgcggca cctgtagcgg gccaacaaaa tgtaattgac 5221 ccctggatta gaaataattt tgtacaagcc cctggtggag agtttacagt gtcccctaga 5281 aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa tccctactta 5341 tctcatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc 5401 gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca 5461 actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt agatgttagg 5521 caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattataat 5581 caatcaaatg accccactat taagttgata gcaatgttgt atacaccact tagggctaat 5641 aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgaggcc atcccccgat 5701 tttgacttca tatttctagt gccacccaca gttgagtcaa gaactaagcc attctctgtc 5761 ccaattttaa ctgttgagga aatgaccaat tcaagattcc ccattccttt ggaaaagttg 5821 ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggtagatg cacgactgat 5881 ggcgtgctcc taggcaccac ccaactgtct cctgttaaca tctgcacctt cagaggagat 5941 gtcacccata tcacaggtag ccataactac acaatgaatt tggcttctca aaattggagc 6001 aattacgacc caacggaaga aattccagcc cctctaggga ctccagactt tgtggggaag 6061 attcaaggca tgctcaccca aaccacaagg acagatggct caacacgcgg ccacaaagcc 6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact 6181 gacacaaaca atgattttga agctaaccaa aacacaaagt tcaccccagt tggtgtcatc 6241 caagatggtg gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca 6301 ggcaggaaca ctcctaatgt gcatctggcc cccgctgtag cccccacttt tccgggtgag 6361 caactcctct tcttcagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg 6421 gattgtctgc tcccccagga atgggtgcag tacttctacc aagaggcagc cccagcacaa 6481 tccgatgtgg ctctgctaag gtttgtgaat ccagacacag gtagggtttt gtttgaatgt 6541 aagcttcata aatcaggcta tgttacagtg gctcacactg gccagcatga tttggttatc 6601 ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac gcttgccccc 6661 atgggaaatg gagcggggcg tagacgtgca ctataatggc tggagctttc tttgctggat 6721 tggcatctga tgtccttggc tctgggcttg gttcccttat caacgctggg gctggggcca 6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc tttcaattta 6841 gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa gcacaaattg 6901 aggctaccaa aaagttacaa caggaaatga tgaaagttaa acaggcaatg ctcttagagg 6961 gtgggttctc tgagacagat gcagcccgcg gggcaatcaa cgcccctatg acaaaagctt 7021 tggattggag cgggacaagg tactgggctc ctgatgctag gactacaaca tacaatgcag 7081 gccgcttttc caccccccaa ccatcggggg cgctgccagg aagagctaat cttagggatg 7141 ctgtccctgc tcggggttcc tctagtaggt cttctaattc ctctactgct acttctgtgt 7201 actcaaatca aactatttca acgagacttg gttctacagc tggttctggt accagtgtct 7261 cgagcttccc gtcaactgca aggactagga gctgggttga ggatcaaagt aggaatttgt 7321 caccttttat gaggggggcc cacaacatat cgtttgtcac cccaccatct agcagatcct 7381 ctagccaagg cacagtctca accgtgccta aagagatttt ggactcctgg actggcgctt 7441 tcaacacg //