Typing tool
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Typing tool
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Complete norovirus genomes
| OM372676 | GII.2 | |
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| GII.P16 |
ORF1: 1..5081
ORF2: 5062..6690
ORF3: 6690..7420
LOCUS OM372676 7420 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS182 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372676
VERSION OM372676.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7420)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7420)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7420
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS182"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5081
/gene="ORF1"
CDS <1..5081
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP30082.1"
/translation="ATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRD
KPQKPPRPPTPELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTA
FSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMARVE
LAPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRR
MIQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLN
ILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVEL
VPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEA
NELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTKSASP
DIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVARKVA
STLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLN
CDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDF
PGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLH
ERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQ
AIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKIKNTSVQTNNELAGALHHLKHARIR
YYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSEDD
EFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEY
LQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRK
RNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITST
HVIPAGITEAFGVPITQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLI
KRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIY
KRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKL
STKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRP
SVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGETFTG
KLADQASKANLMFEEGKHVTPVYTAALKDELVKTEKIYGKIKKRLLWGSDLSTMIRCA
RSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAV
LAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIA
HWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPT
RPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNE
TMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMR
FSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..977
/gene="ORF1"
/product="p48"
mat_peptide 978..2075
/gene="ORF1"
/product="NTPase"
mat_peptide 2076..2606
/gene="ORF1"
/product="p22"
mat_peptide 2607..3005
/gene="ORF1"
/product="VPg"
mat_peptide 3006..3548
/gene="ORF1"
/product="Pro"
mat_peptide 3549..5078
/gene="ORF1"
/product="RdRp"
gene 5062..6690
/gene="ORF2"
CDS 5062..6690
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP30083.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVSGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6690..>7420
/gene="ORF3"
CDS 6690..>7420
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP30084.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHSTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RTSDGTVSTVPKGVLDSWTPAFNTR"
ORIGIN
1 acgctaccgt tgccgttgct tgcaacaaca acaacgacaa agaaaaatct tcaggtgaag
61 gcttattcac aaatatgtct tccaccttaa agaaagccct cggggccagg cccaaacagc
121 ctgccccgag agacaaacca caaaagcccc caagaccacc aactcccgag ttggtcaaga
181 ggataccccc tcctccacct aacggcgaag aagaagaaga accagtcatt aggtatgagg
241 tcaagagtgg gatctctggc ctgcccgagc tcacaacagt cccccaaccg gacgtggcca
301 acacagcatt cagtgttcca ccactgagct tgagagaaaa cagggaggcc aaggagccgc
361 taacaggggc aatattagag atgtgggatg gagagatata ccactatggc ctgtacgtgg
421 agaaaggctt agtgttgggt gtgcacaaac cacctgcagc cataagcatg gcaagagtgg
481 agctggcacc gctgtcattg tactggcgtg tggtgtacac tccccaatac ctcatctccc
541 ctgaaaccct caggaggctc aacggagagg cattccctta caccgccttt gacaacaact
601 gctatgcctt ctgctgctgg gtgttagacc tcaatgactc atggcttagc aggaggatga
661 tacagagaac aacgggcttc ttcagacctt accaagagtg gaacagaaaa cccctgccca
721 ccatggatga ctccaaaatt aagaaggtag caaatatatt cctatgttca ttgtccacat
781 tattcaccag acccataaaa gacctcatag gaaaaattaa accattgaac atattgaata
841 tcctggcaac gtgtgactgg acctttgccg gaatagtgga gtctctaata ttatttgctg
901 aactcttcgg agttttctgg acacccccag atgtgtctgc tatgatcgct cccttactcg
961 gggactacga gttgcaaggg ccagaagacc tcgccgttga acttgtgcct gtggtaatgg
1021 gagggattgg tttggtgttg ggattcacca aagagaaaat tggcaaaatg ttgtcctcag
1081 ctgcatcaac actcagggct tgcaaagatc ttggtgccta tggcttagag atactcaaac
1141 tggtcatgaa gtggttcttc ccaaagaaag aggaggccaa tgagctagct atggtgaggg
1201 ccatagagga tgctgtatta gaccttgagg caatagaaaa taaccacatg acaaccctgt
1261 tgaaagacaa agacagctta gcaacataca tgaaaacact ggacatggag gaggagaaag
1321 ccaggaggtt gtccacaaaa tctgcatccc ctgacatagt tgggacaatc aacgccctgc
1381 tggctcgaat agcagcggcc aggtcattag tccacagggc caaggaagag ctatctagta
1441 ggataaggcc agtagttgtt atgatatctg gcaagccagg aataggcaaa actcatctgg
1501 ctagggaggt ggcaagaaag gtggcatcca ctctcacagg agatcaaaga gtcggactca
1561 taccacgaaa cggtgtggac cattgggatg catacaaagg tgagagagtc gtgctgtggg
1621 acgactatgg catgagtaac cctattcatg atgctcttcg catacaagaa ttggctgata
1681 cgtgtcccct taccttaaat tgtgacagaa ttgaaaataa gggaaaagtt tttgacagtg
1741 aagtcataat aattacaaca aaccttgcca atccagcccc acttgattat gtcaactttg
1801 aggcctgttc caggagaatt gatttcctgg tgtacgctga ggcaccagaa gtagaaaagg
1861 caaaacggga ctttcctggt caaccagata tgtggaagga cgccttcaag ccggactttt
1921 cacacatcaa gctacagctt gcaccccagg gcggctttga caagaatggc aacaccccac
1981 atgggaaagg ggtgatgaag accctcacta ccggttctct gattgcccgt gcatcaggcc
2041 tactgcatga gaggatggat gaatttgaac tccaaggccc cacaatcacc acctttaatt
2101 tcgaccgaaa caggatcacg gcattcagac aattggctgc agaaaacaag tatggattgg
2161 tggataccat gaaagttggc aatcaattaa aaggagtgaa aaccatggaa gaactcaaac
2221 aagcaattag gaatgtgacc atcaagaggt gtcagatcat ctacggtggt tccacgtatg
2281 accttgaatc tgatggcaag ggcaaagttt tggtggaaaa gatcaagaac acctctgtac
2341 agaccaataa cgagttggct ggggccctgc accatctcaa acatgcccga atcaggtact
2401 atgtcaaatg tgtgcaagaa gcagtctatt ccatcataca aattgccggc gctgcgtttg
2461 tcaccacgcg catcgcacgc cgcatgaaca tacaagaact ctggtcgaag ccacaactag
2521 atcaaaatga atcagagact aaggaagagg cccccaagtc agaagatgac gagttcatca
2581 tatcctctaa ggacatcaag gaggaaggaa agaagggcaa aaacaaaact ggccgtggca
2641 agaaacacac tgcattctcc agcaagggct tgagcgatga ggagtatgac gagtacaaga
2701 ggataagaga agagagaaat gggaagtact ctatagagga gtatcttcaa gacagagaca
2761 ggtactatga ggagctcgcc attgccaagg ccacggaaga agacttctgt gaagaggagg
2821 agatcaaaat ccgtcagaga attttccgtc ccaccaggaa acaaagaaag gaagagaggg
2881 ccacattagg gctagtaaca ggttcagaaa tcagaaaaag aaaccctgat gacttcaaac
2941 ccaaagggaa gctgtgggcc gatgacaaca ggagtgttga ctacaatgag aaactggact
3001 ttgaggcccc cccaagcata tggtctagaa ttgtgagctt tggctctggc tggggcttct
3061 gggtgtcacc aagccttttc ataacatcaa ctcatgtaat ccccgcaggc ataacagaag
3121 catttggagt ccccatcaca caaattcaga tccacaaatc aggcgaattt tgccgattca
3181 gattcccaaa accaatcaga ccagatgtga caggaatgat cttggaagag ggtgcgcctg
3241 agggcaccgt ggcaactgtg ctcatcaaac gccccaccgg agagctcatg cctcttgcag
3301 ccagaatggg aacacacgca accatgaaaa ttcaaggccg catggttggc ggacagatgg
3361 gtatgttgct cactggatca aatgctaaag gaatggactt gggaacgact cctggtgact
3421 gtggctgtcc ttacatctat aaaaggggca atgactatat agccattggg gtgcacactg
3481 cagcagcccg tggtggaaac actgtcatct gcgccacaca gggaagtgag ggtgaggcaa
3541 ctcttgaggg tggagatgac aaaggaacat actgtggggc acccattcta ggccctgggg
3601 gtgcaccaaa attgagcacc aaaaccaaat tttggaggtc atcgaacacg cccctcccac
3661 cagggacata tgagcctgcc tacctcggtg gccgtgatcc gcgtgttaag ggtgggcctt
3721 ccctgcagca ggtgatgagg gaccagttga agccattcac tgaacccagg ggcaaacctc
3781 caagaccaag tgtgttggaa gcagccaaac aaaccatcat caatgtcctc gaacaaaccc
3841 tggaccctcc acaaaaatgg acatacgcac aggcgtgcgc ctcacttgac aaaaccacct
3901 ccagcgggca ccctcatcac gtccgaaaga atgaattctg gaatggtgag accttcactg
3961 gtaaactagc agaccaagca tcaaaagcaa acctaatgtt tgaggaaggg aaacacgtga
4021 caccagtgta cacggcagca ctcaaggacg agctagtcaa gactgagaaa atttatggaa
4081 agatcaagaa gagactgctc tggggctctg acttgtccac catgatccgg tgcgctaggt
4141 catttggtgg gcttatggac gagatgaagg cacactgcat atcactccca gtccgagttg
4201 gcatgaatat gaatgaagat ggcccaataa tatttgagaa acattccaga tacaaatatc
4261 actatgatgc agactattct cgttgggatt caacacaaca gagggcagtt ctagcagcag
4321 ccttggaaat catggtcaga ttctctgcag aaccacaatt ggcacaaata gtcgctgagg
4381 atctgctggc ccctagtgta gtagatgtag gagactttaa aatcacaata aatgaagggc
4441 tcccttctgg tgtgccatgc acttctcaat ggaactccat cgcacactgg ctgctaactc
4501 tctgcgcctt gtctgaagtc accaaactat cccctgacat tatacaggca aattccatgt
4561 tctcatttta cggtgatgac gagattgtca gtaccgacat aaaattggac cctgaacagt
4621 taaccgccaa attgaaggag tatggcctga aaccaacccg cccagacaaa accgagggac
4681 ccctgattat cagtgaagat ttaaacggtc tcactttcct ccgaagaacg gtgactcgtg
4741 acccagctgg ctggtttgga aaattggatc aaagctcaat tttgaggcag atgtactgga
4801 ctagaggacc aaatcatgaa gaccccaatg agacaatgat accccattcc caaagaccca
4861 tacagctcat ggcactgctt ggtgaagcct ctcttcacgg accctctttc tacagtaaaa
4921 tcagtaaatt ggtcataact gaactcaaag aaggtgggat ggacttttac gtgccaaggc
4981 aggaacccat gttcaggtgg atgaggtttt ctgacttgag cacgtgggag ggcgatcgca
5041 atctggctcc caattttgtg aatgaagatg gcgtcgaatg acgccgctcc atctactgat
5101 ggtgcagccg gcctcgtgcc agaaagtaac aatgaggtca tggctcttga acccgtggct
5161 ggtgccgcct tggcagcccc ggtctccggt caaacaaata ttatagaccc ttggattaga
5221 gcaaattttg tccaggcccc caatggtgaa tttacagtct ctccccgaaa tgcccctggt
5281 gaagtgctac tgaatctaga gttgggtcca gaattaaatc cttatctggc acatttagca
5341 agaatgtaca atgggtatgc cggtgggatg gaggtgcagg tcatgttggc tgggaacgcg
5401 ttcacagccg gcaagttggt cttcgccgcc gtgccacccc atttcccggt tgaaaacctt
5461 agcccacagc aaatcaccat gttccctcat gtgatcatag atgtgagaac cttggaacct
5521 gttttattac cactccccga tgttaggaat aacttcttcc attataacca gaaagatgat
5581 cccaagatga gaattgtggc tatgctttat acccccctca ggtctaatgg ttcaggtgat
5641 gatgtgttta cagtttcctg tagagtgttg actagacctt cccctgactt tgacttcaca
5701 tacctggtgc caccaacagt ggagtctaaa acaaagccat tcaccctccc aatcctcaca
5761 cttggggaac tttccaattc taggttccca gtgtccatag accagatgta caccagccct
5821 aatgaaatta tatcagtgca gtgtcaaaat ggtaggtgca cactggacgg ggagctccaa
5881 gggacaacac agctccaagt cagtggcatt tgtgctttca aaggtgaagt gaccgcccac
5941 ttgcatgaca atgatcacct atataatgtc accatcacaa acttgaatgg gtcccctttt
6001 gatccctccg aggatatccc tgcccctttg ggtgtgcctg acttccaggg aagggttttt
6061 ggtatcatct cccaaagaga taaacacaat agtcctgggc ataatgaacc agcaaacagg
6121 ggacacgacg ctgtggtccc tacttacaca gcacagtaca ctccaaaact tggacaaatt
6181 caaattggca catggcaaac tgacgatctt acagtcaacc aaccagtcaa attcacccca
6241 gttggactca atgacactga acactttaac caatgggtgg tccctaggta tgctggcgcc
6301 ctaaacctca atacaaacct tgccccttct gttgctccag tatttccagg agagcgcctg
6361 ctcttcttca gatcatacat tcccctcaag ggcggttatg gaaacccagc cattgattgc
6421 ctactaccac aagagtgggt gcagcacttc tatcaggaag cagccccttc aatgagtgag
6481 gtggccctcg tcagatacat caacccggac actggtcggg cactatttga ggccaagctc
6541 cacagagctg gtttcatgac agtctcgagc aacaccagtg ccccggtggt tgtgcctgcc
6601 aacgggtact tcagatttga ttcttgggtg aaccaatttt attctctcgc ccccatggga
6661 actgggaatg ggcgtagaag ggttcagtaa tggctggagc ttttgtagct ggtcttgcag
6721 gggacgtgct cagcaatggg cttagttcat taatcaatgc aggtgctaat gcaataaatc
6781 agagggcaga atttgatttt aatcaaaaat tgcagcaaaa ttcttttaat catgataagg
6841 agatgttgca ggctcagatt caggcaacta agcagctgca ggcagacatg atggctataa
6901 aacaaggggt cttgaccgct ggcggctttt cccctgctga tgcagccaga ggtgctgtga
6961 acgcgcccat gacacaggcg ctggattgga atggcacaag gtattgggca ccaaactcca
7021 tgaggactac atcttattct ggaaaattca catcaaccgc cccagtgagg caggctgact
7081 tccagcacac ccaaagccgg ccttcgagtg gctcctctgt gtcttccttt gccactcagt
7141 cttcaaggcc aactctgacc acaaccactg gttcctcaca tagcacagcc tcatcaaatt
7201 caactcgcag cacaagcctc tcccaatcaa cggtctccag agctacatct aggactggtg
7261 agtgggttag agatcaaaat agaaatttgg aaccctacat gcatggtgcc ttacagacag
7321 cctttgtcac cccaccttcc agcaggacat ctgacgggac agtctcaacc gtccctaaag
7381 gtgttttgga ctcctggaca cctgcgttta acacccgcag
//