Typing tool
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Typing tool
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Complete norovirus genomes
| OM372672 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5093
ORF2: 5074..6696
ORF3: 6696..7502
LOCUS OM372672 7534 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS180 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372672
VERSION OM372672.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7534)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7534)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7534
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS180"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Nov-2018"
/note="genotype: GII"
gene <1..5093
/gene="ORF1"
CDS <1..5093
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP30079.1"
/translation="ASNDASAAAVANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQP
PPKEIPPRPPRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETN
TAFSVPPLNQRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAK
VELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLS
RRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKP
LNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAV
ELVPIVMGGVGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKE
EANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSA
SPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKK
IAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLT
LNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKR
DFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGL
LHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDL
KQALKNIAIKKCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCAR
IRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKP
KDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGS
EIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLF
ITSTHVIPQGAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVA
TLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGC
PYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGS
APKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGE
SFTGKLADQASKANLMFEEGKNMTPIYTGALKDELVKTDKVYGKVKKRLLWGSDLATM
IRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQ
QRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQW
NSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYG
LKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHE
DPFETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..983
/gene="ORF1"
/product="p48"
mat_peptide 984..2081
/gene="ORF1"
/product="NTPase"
mat_peptide 2082..2618
/gene="ORF1"
/product="p22"
mat_peptide 2619..3017
/gene="ORF1"
/product="VPg"
mat_peptide 3018..3560
/gene="ORF1"
/product="Pro"
mat_peptide 3561..5090
/gene="ORF1"
/product="RdRp"
gene 5074..6696
/gene="ORF2"
CDS 5074..6696
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP30080.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6696..7502
/gene="ORF3"
CDS 6696..7502
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP30081.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAVLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSIATSVYSNQTTSTRLGSTAGSGTSVSSFPTTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tggcgtctaa cgacgcttcc gctgccgctg ttgccaacag caacaacgac atcgcaaaat
61 cttcaagtga cggtgtgttt tctaacatgg ctgtcacttt taagcgggcc ctcggggcgc
121 ggcctaaaca gccgcccccg aaggaaatac cacccagacc cccgcgacca cccacaccag
181 aattggtcaa aaagatccct cctcccccac ccaacgggga ggatgaacta gtggtctctt
241 ataacgccaa agatggcgtt tccggactgc ctgagctcac cactgtcaga caaccggaag
301 aaaccaacac ggcgttcagt gtcccccctc tcaaccaaag ggagagcagg gacgccaagg
361 agccactaac tggaacaatc attgaaatgt gggatggaga aatctaccat tacggcctgt
421 acgtggaacg aggtcttata cttggtgtgc acaagccacc ggcagccatc agcctcgcta
481 aggtcgagct ggcaccgctc tctttgttct ggagacctgt atacaccccc caatacctta
541 tctctccaga cactcttagg agattacatg gagagtcatt cccctacact gcatttgaca
601 acaattgcta cgccttttgt tgttgggtat tagacctaaa cgactcatgg ctaagcagga
661 gaatgattca gagaacaaca ggcttcttca ggccgtacca ggattggaac aggaaacccc
721 ttcccactat ggatgattcc aaattaaaga aggtagccaa catattcttg tgcactttgt
781 cttcactatt caccaggcct attaaggaca taatagggaa gttgaaacct ctcaacatcc
841 ttaatattct ggctacatgt gattggacct tcgcaggcat agtggaatcc ttaatactct
901 tggcagaact ctttggagtt ttctggacac ccccagatgt gtctgcgatg atcgccccct
961 tgctaggtga ttatgaactg caaggacccg aggaccttgc agtggaactg gtcccaatag
1021 tgatgggggg ggtaggtttg gtgctaggat ttaccaaaga gaagatcgga aagatgctgt
1081 catccgctgc atccacttta agagcttgta aagaccttgg tgcatacggg ctggaaatct
1141 taaaattggt catgaagtgg ttcttcccaa agaaagagga agcaaatgaa ctggctatgg
1201 tgagatccat cgaggatgca gtactagacc tcgaggcaat tgaaaacaac cacatgacca
1261 ccctgctcaa agacaaagac agcttgacaa cctacatgag gacccttgat cttgaggagg
1321 agaaagccag aaaactctca accaaatctg cttcacccga tattgtgggc acaatcaact
1381 ctcttctggc aagaatcgct gctgcacgct ccctagtgca tcgggcgaaa gaagagcttt
1441 ccagcaggcc gagacctgtc gttgtaatga tatcgggaag accagggata gggaaaactc
1501 accttgccag ggagctggcc aagaagatcg cggcctccct cacaggggac cagcgtgtgg
1561 gcctcatccc acgcaatggt gtcgaccact gggacgcata caagggcgaa agggttgtcc
1621 tatgggacga ctatggaatg agcaacccca tccatgatgc ccttaggttg caggagcttg
1681 ctgacacttg ccccctcacg ctaaactgtg acagaattga gaacaaagga aaagtctttg
1741 acagtgatgc cataattatc accaccaacc tggccaaccc agcaccactg gattatgtca
1801 actttgaagc gtgctcgaga cgcattgatt tcctcgtgta cgcagaagcc cctgaggtgg
1861 agaaggcaaa gcgcgacttc ccaggtcaac ctgacatgtg gaagaacgct ttcagtcctg
1921 acttctcaca cataaaactg tcattggctc cacagggtgg ttttgacaag aacggcaaca
1981 ccccgcatgg aaaaggggtc atgaagaccc tcaccactgg ctccctcatc gcccgagcat
2041 cggggttact ccatgagagg ctagatgaat atgaattgca aggcccagcc ctcaccactt
2101 tcaactttga ccgcaacaag atacttgctt ttagacagct tgctgctgaa aacaagtatg
2161 ggctgatgga cacaatgaga gttggaaagc agctcaagga tgtcaagact atgtcagacc
2221 tcaaacaagc actcaagaac atcgcaatca agaagtgcca gatagtgtac aatggtggca
2281 cctacacact tgaggctgat ggcaagggca gtgtgaaagt tgacaaagtg caaagtgcca
2341 ctgtgcagac caacaatgaa ctagccggtg ccctacacca cctaagatgc gctagaatca
2401 gatactatgt taagtgcgtc caggaggcac tgtattccat catccaaatc gctggggctg
2461 cattcgtcac cacgcgcatc gctaagcgca tgaatataca gaatctctgg tccaagccac
2521 aggtggaaga cacagaagag atggccaaca aagatggttg cctaaaaccc aaagatgatg
2581 aagagtttgt cgtttcatcc gacgacatca aaactgaggg caagaaaggg aagaacaagt
2641 ccggccgtgg caagaagcac acagcctttt caagtaaagg gctcagtgat gaggagtacg
2701 atgagtacaa gagaatcaga gaagaaagga atggtaagta ctccatagaa gagtaccttc
2761 aggacagaga caggtactac gaggaggtgg ccattgccag ggcaaccgaa gaggacttct
2821 gtgaagaaga agaggccaaa atccggcaga ggattttcag accaacaagg aaacaacgta
2881 aagaagagag ggcttctctc ggcttggtca caggctctga aatcaggaag agaaacccag
2941 aagacttcaa acccaaggga aagctgtggg ctgatgacga cagaagtgtt gactacaatg
3001 agaaactcaa ctttgaggcc ccaccaagca tctggtcgcg gatagtcaac tttggttcag
3061 gctggggctt ctgggtctcc cccagtctgt ttataacatc aacccatgtc ataccccaag
3121 gtgcaaagga gttcttcgga gtccctatca agcaaatcca gatacacaag tcaggtgaat
3181 tctgccgatt gagattccca aagccaatca gaaccgatgt gacgggcatg attctagaag
3241 aaggtgcgcc cgaggggacc gtggccacac tgctcatcaa gagaccaact ggagagctca
3301 tgcctctggc agccagaatg gggacccatg caaccatgaa aattcagggg cgcacagttg
3361 gagggcaaat gggtatgctc ctgacaggat ccaacgccaa gagtatggac ctaggcacaa
3421 caccaggcga ctgcggctgc ccctacatct acaagagggg gaatgactac gtggtcatag
3481 gggtccatac ggctgctgcc cgtggaggaa acactgtcat atgtgccacc cagggaagtg
3541 agggagaggc cacacttgaa ggaggtgaca gtaaggggac atactgtggc gcgccaatct
3601 tgggcccagg gagcgctccg aagctcagca ccaagactaa gttttggaga tcatccacaa
3661 caccactccc acctggcacc tacgaaccag cctacctcgg tggcaaagac cctagagtca
3721 aaggtggccc ttcattgcaa caagttatga gggaccagct gaagccattc acagaaccca
3781 gaggcaaacc accaagacca aatgtgttgg aagctgccaa gaaaaccatc atcaatgtcc
3841 ttgagcaaac aattgatcca ccccaaaaat ggtcatttgc gcaagcttgc gcatcccttg
3901 acaaaaccac ctccagcggc catccgcacc acatgcggaa aaacgactgt tggaatgggg
3961 agtccttcac aggaaagttg gctgaccaag cctccaaggc caacctaatg tttgaagagg
4021 gaaagaacat gactccaatc tacacaggtg cacttaaaga tgagttggta aagaccgata
4081 aagtttatgg taaggtcaag aagaggcttc tatggggttc agatctggcg accatgatac
4141 ggtgcgcccg agcttttgga ggcctcatgg atgaactcaa ggcacactgt gtcacactcc
4201 ctgtcagagt tggtatgaac atgaatgagg atggccccat catcttcgag aagcactcca
4261 gatatagata tcattatgat gctgactatt cccggtggga ctcaacacaa caaagggatg
4321 tgctagcagc agcactagaa atcatggtta agttctctcc agaaccacac ctggcccaga
4381 tagttgcaga agacctcctt tcccctagcg tgatggatgt gggtgacttt caaatatcaa
4441 taagtgaggg tctcccctct ggggtgcctt gcacctccca gtggaattcc atcgcccact
4501 ggctcctcac tctgtgtgca ctctctgaag tcacggacct gtcccctgat atcattcagg
4561 ccaactccct tttctccttc tatggtgatg atgagattgt aagcacagac ataaagttgg
4621 acccagagag gctaacagca aaactcaagg agtacggact gaaaccaacc cgtcccgaca
4681 aaactgaagg accccttgtc atctctgaag acctggatgg tctgacattc ctccggagaa
4741 ctgtgacccg tgatccagct ggctggtttg gaaaattgga acaaagttca attcttaggc
4801 aaatgtactg gaccaggggt cccaaccatg aagacccatt tgaaacaatg ataccacact
4861 cccagagacc catacaattg atgtccttgc tgggcgaggc tgcactccac ggcccggcat
4921 tctacagcaa aattagcaaa ttagtcattg cagagttgaa ggaaggtggc atggattttt
4981 acgtacccag acaagagcca atgttcagat ggatgagatt ctcagatctg agcacgtggg
5041 agggcgatcg caatctggct cccagttttg tgaatgaaga tggcgtcgag tgacgtcaac
5101 ccatctgatg ggtccgcagc caacctcgtc ccagaggtca acaatgaggt tatggctctg
5161 gagcccgttg ttggtgccgc catcgcggca cctgtagcgg gccaacaaaa tgtaattgac
5221 ccctggatta gaaacaattt tgtacaagcc cctggtggag agtttacagt atcccctaga
5281 aacgctccag gtgaaatact atggagcgcg cccttgggcc ctgatctaaa tccctacttg
5341 tctcatttgg ccagaatgta caatggttat gcaggtggtt ttgaagtgca ggtaattctc
5401 gcggggaacg cgttcaccgc cgggaaggtc atatttgcag cagtcccacc aaattttcca
5461 actgaaggct tgagccccag ccaggtcact atgttccccc atatagtagt agatgttagg
5521 caactagaac ctgtgttgat tcccttaccc gatgttagga ataatttcta tcattacaat
5581 caatcaaatg accccaccat taagttgata gcaatgttgt atacaccact tagggctaat
5641 aatgctgggg atgatgtctt cacagtttct tgccgagttc tcacgagacc atcccccgat
5701 tttgacttca tatttctagt gccacccaca gttgagtcaa gaactaaacc attctctgtc
5761 ccagttttga ctgttgagga gatgaccaat tcaagattcc ccattccttt ggaaaagttg
5821 ttcacgggtc ccagcagtgc ctttgttgtc caaccacaaa acggtaggtg cacgactgat
5881 ggcgtgctcc taggcaccac ccaactgtct cctgtcaaca tctgcacctt tagaggagat
5941 gtcacccata tcacaggtag tcataactat acaatgaatt tggcttctca aaattggagc
6001 aactacgacc caacagaaga aatcccagcc cctctaggga ctccagactt tgtggggaag
6061 attcaaggta tgcttaccca aaccacaagg acagatggct caacacgcgg ccacaaagcc
6121 acagtgtaca ctgggagcgc cgactttgct ccaaaactgg gtagagttca atttgaaact
6181 gacacaaaca atgattttga agctaaccaa aacacaaagt tcaccccagt tggtgtcatc
6241 caagatggtg gcaccaccca ccgaaatgaa ccccaacagt gggtgctccc aagttactca
6301 ggcaggaaca ctcctaatgt gcatctagcc cccgctgtgg ccccaacttt tccgggtgag
6361 caactcctct tctttagatc caccatgccc ggatgcagcg ggtaccccaa catggatttg
6421 gattgtctgc tcccccagga atgggtgcag tacttctacc aggaggcagc cccagcacaa
6481 tctgatgtgg ctctgctaag atttgtgaat ccagacacag gtagggtttt gtttgaatgt
6541 aagcttcaca aatcaggcta tgttacagtg gctcacaccg gccaacatga tttggttatc
6601 ccccccaatg gttattttag gtttgattcc tgggtcaacc agttttacac gcttgccccc
6661 atgggaaatg gagcggggcg tagacgtgca ctataatggc tggagctttc tttgctggat
6721 tggcatctga tgtccttggc tctggacttg gttcccttat caatgctggg gctggggcca
6781 tcaaccaaaa agttgagttt gaaaataaca gaaaattgca acaagcatcc ttccaattta
6841 gcagcaatct acaacaggct tcctttcaac atgacaaaga gatgctccaa gcacaaattg
6901 aggctaccaa aaggttacaa caggaaatga tgaaagttaa gcaggcagtg ctcctagagg
6961 gtgggttctc tgagacagat gcagcccgcg gggcaattaa cgcccctatg acaaaagcct
7021 tggactggag cgggacaagg tactgggctc ctgatgctag gactacaaca tacaatgcag
7081 gccgcttttc caccccccaa ccatcggggg cgctgccagg aagagctaat tttagggatg
7141 ctgtccctgc tcggggttcc tctagtaagt cttctaattc ttctatcgct acttctgtgt
7201 attcaaatca aactacttca acgagacttg gttctacagc tggttctggt accagtgtct
7261 cgagcttccc gacaactgca aggactagga gctgggttga ggaccaaagt aggaatttgt
7321 cacctttcat gaggggggcc cacaacatat cgtttgtcac cccaccatct agcaggtcct
7381 ctagccaagg cacagtctca accgtgccta aagagatttt ggactcctgg actggcgctt
7441 tcaacacgcg caggcagcca ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt
7501 aatgtgaaaa gacaaaaatt gattatcttt cttt
//