Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM372595 | GII.3 | |
|
|---|---|---|---|
| GII.P12 |
ORF1: 1..5059
ORF2: 5040..6686
ORF3: 6686..7439
LOCUS OM372595 7439 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS161-1 nonstructural polyprotein (ORF1)
gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3)
gene, partial cds.
ACCESSION OM372595
VERSION OM372595.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7439)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7439)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7439
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS161-1"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Oct-2018"
/note="genotype: GII"
gene <1..5059
/gene="ORF1"
CDS <1..5059
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29982.1"
/translation="NSNNDNAKSSSDGVLSSMAVTFKRALGARQKQPPPREIPQRPPR
PPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPDETNTAFSVPPLNQR
ENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAPLSLFWR
PVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQRTTGFF
RPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILNILASCD
WTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIG
LVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSI
EDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINAL
LARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRV
GLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGK
VFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKN
AFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQ
GPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMSELKQALKNVAIKS
CQIVYGGCTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLRCARIRYYVKCVQEA
LYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEEFVVSSD
DIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRY
YEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFK
PKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGA
QEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPTGEL
MPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYV
VIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFW
RSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLEAAK
KTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQAS
KANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLM
EELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEI
MVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLC
ALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEG
PLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQ
RPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTW
EGDRNLAPSFVNEDGVE"
mat_peptide <1..949
/gene="ORF1"
/product="p48"
mat_peptide 950..2047
/gene="ORF1"
/product="NTPase"
mat_peptide 2048..2584
/gene="ORF1"
/product="p22"
mat_peptide 2585..2983
/gene="ORF1"
/product="VPg"
mat_peptide 2984..3526
/gene="ORF1"
/product="Pro"
mat_peptide 3527..5056
/gene="ORF1"
/product="RdRp"
gene 5040..6686
/gene="ORF2"
CDS 5040..6686
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29983.1"
/translation="MKMASSDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGRVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6686..>7439
/gene="ORF3"
CDS 6686..>7439
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29984.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSVSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGE"
ORIGIN
1 taatagcaac aacgacaacg caaaatcttc aagtgacgga gtgctttcta gcatggctgt
61 cacttttaaa cgagccctcg gggcacggca aaaacagcct cccccgaggg aaataccaca
121 aaggcctcca cggccgccca ccccagaact ggtcaaaaag atccctcctc ccccacccaa
181 tggggaggat gaactagtgg tctcttatag cgccaaagat ggcgtttctg gtctgcctga
241 acttaccact gtctggcaac cggatgagac caacacggca ttcagtgttc cccctctcaa
301 ccagagggag aacagggacg ccaaggagcc gctgaccgga acaatcctgg aaatgtggga
361 cggggagatc tatcattatg gtctgtatgt ggagcgaggc cttgtacttg gtgtgcacaa
421 accaccagct gccatcagcc tcgccaaggt tgaactagca ccactctctc tgttttggag
481 gccagtgtac acaccacagt atctcatctc tccagacact cttaggagac tgcacggaga
541 gtcgttcccc tacacagcct ttgacaacaa ctgctatgcc ttctgttgtt gggttttgga
601 cctaaacgac tcgtggttgt gcaggagaat gatccagaga acaactggct tcttcagacc
661 ttaccaagaa tggaacagga aacccctccc caccatggat gactctaaat tgaagaaggt
721 agccaacata ttcttgtgtg cgctatcttc gctattcact aggcccatca aagacataat
781 aggaaaggtg agaccgctca acatccttaa catcctggcc tcatgtgatt ggacttttgc
841 aggcatagtg gaatctttga tcctcttggc agagctcttt ggagttttct ggacaccccc
901 agatgtgtct gcgatgatcg cccccttact aggtgactac gaactgcagg ggcctgagga
961 ccttgcagtg gagctcgtac cagtagtgat gggagggatt ggtttggtgt taggattcac
1021 caaagagaag atcggaaaaa tgttgtcatc cgctgcttcc accttaagag cttgtaaaga
1081 ccttggtgca tacgggctgg aaatcctaaa attggtcatg aaatggttct tcccaaagaa
1141 agaggaagca aatgagctag ctatggtgag gtccatcgag gatgcggtgc tggacctcga
1201 agcaattgag aacaaccaca tgactgccct cctcaaagac aaagacagct tggcaaccta
1261 tatgaggacc cttgatctcg aggaggagaa agccaggaag ctttcaacca agtctgcttc
1321 acctgacatc gtgggcacaa ttaacgccct cctggcgaga atcgccgctg cacgttccct
1381 ggtgcatcgg gcgaaagagg aactctccag cagaccaaga cctgttgttg ttatgatatc
1441 aggtaggcca gggataggga aaacgcacct tgccagggag ctggccaaga agattgcagc
1501 ttcactcaca ggggaccagc gcgtgggtct catccctcgc aatggcgttg accactggga
1561 tgcatataag ggagaaagag tcgtcctatg ggacgattat ggaatgagca atcccatcca
1621 cgacgccctc aggttacagg aacttgctga cacctgtccc cttacgctaa actgtgacag
1681 gattgagaac aaaggaaagg tctttgatag tgatgccata atcatcacca ctaatctagc
1741 caacccagca ccattggact atgtcaactt tgaagcatgc tcgaggcgca ttgacttcct
1801 cgtgtacgca gaagcccctg aggtcgagaa agcaaagcgt gatttcccag gtcaacctga
1861 catgtggaag aacgcattta gctctgactt ctcgcacata aaactggcgc tggctccgca
1921 gggtggtttc gacaagaacg gaaacacccc acacgggaaa ggcgtcatga aaaccctcac
1981 tactggttcc ctcatcgccc gagcatcagg gctactccat gagaggttgg atgagtacga
2041 gctgcagggc ccaactccca ccacctttaa ttttgaccgc aacaaggtgc ttgcgttcag
2101 acaacttgct gccgaaaaca agtatggatt gttggacaca atgagagttg gaaaacagct
2161 caaggatgtt aagaccatgt cagagctcaa acaggcactc aagaatgtcg caatcaagag
2221 ttgtcagata gtgtatggtg gctgcaccta caggcttgag tctgatggca agggtgatgt
2281 aaaagttgac agagttcaga acgtcactgt acagaccaac aatgagcttg ccggcgcatt
2341 acaccatctt aggtgcgcca gaatcagata ttatgtcaag tgtgttcagg aggccctgta
2401 ttccatcatc caaatcgctg gggctgcatt tgttaccaca cgcattgtca agcgcatgaa
2461 catacaagat ctctggtcca agccacaggt ggaggacaca gaggaaatcg ctagcaagga
2521 tgggtgccca aaaccccagg atgatgaaga gtttgttgtc tcatccgatg acatcaaaac
2581 cgagggcaag aaagggaaga acaagtctgg ccgtggcaag aagcacacag cattttcaag
2641 taaaggtctc agtgatgaag agtacgatga gtacaaaaga attagagaag aaagaaatgg
2701 caaatactcc atagaggaat acctccagga cagagacagg tattatgagg aggtggccat
2761 cgccagggca accgaagagg acttctgtga agaagaagag gccaagatcc gacagaggat
2821 cttcagacca acaaggaaac aacgcaaaga ggagagagcc tctctcggtt tggtcacagg
2881 ttctgaaatt aggaagagga acccagacga cttcaagcct aaaggaaagc tgtgggctga
2941 tgatgacagg agtgttgact acaatgagaa gctcaacttt gaagccccac caagcatctg
3001 gtcgaggata gtcaactttg gctcaggctg gggcttttgg gtttccccca gcctgttcat
3061 aacatcaact catgtcatac cccagggcgc acaggagttc tttggtgtac ccatcaaaca
3121 aatccagata cataaatcag gtgaattctg ccgcttgagg tttccaaagc cgatcagaac
3181 tgatgtgaca ggcatgatct tagaagaagg tgcacccgaa ggaaccgtgg tcacattact
3241 catcaaaaga ccaactggag agctcatgcc cctggcagcc agaatgggaa cccacgcaac
3301 catgaagata caagggcgca ctgttggagg tcaaatgggc atgctcctaa caggatccaa
3361 cgccaagagt atggacctgg gcaccacacc aggtgactgt ggctgcccct acatttacaa
3421 gagggggaat gactacgtgg tcattggggt ccatacagct gccgcccgtg gaggaaacac
3481 cgtcatttgt gccacccagg ggagcgaggg agaagccaca cttgaaggcg gtgatagcaa
3541 ggggacctac tgcggagcac caatcttagg tccaggaagt gccccaaaac tcagcaccaa
3601 gaccaagttc tggagatcat ccacggcacc actcccacct ggcacctatg aaccagctta
3661 ccttggtggc aaggacccca gagttaaggg tggcccttca ctgcaacaag ttatgaggga
3721 tcaactgaaa ccatttactg agcctagggg taggccacca aaaccaagtg tgctagaagc
3781 tgccaagaaa accatcgtca atgtcctaga acagacaatt gacccacctc aaaaatggtc
3841 gtttgcgcag gcatgcgcat ccctagacaa gaccacttct agcggccatc cgcaccacat
3901 gcggaagaat gactgctgga acggggagtc cttcacagga aaattggcag accaggcttc
3961 caaggccaac ctgatgtttg aggagggaaa gaacatgacc ccagtttaca cgggtgcgct
4021 taaggacgag ctggtcaaga ctgacaagat ttatggtaag atcaaaaaga ggcttctctg
4081 gggttcggac ctggcgacca tgattcggtg cgctcgagca ttcgggggtc tgatggagga
4141 actcaaagca cattgtgtca cactacctgt tagggtgggt atgaatatga atgaggatgg
4201 ccctatcatc tttgagagac actccagata taaataccat tatgatgctg actactcccg
4261 gtgggattca acacaacaaa gagccgtgtt ggcagcagcc ttagaaatca tggtcaagtt
4321 ttccccagag ccacacctgg cccaaaaggt tgcagaagac cttctttctc ccagcgtgat
4381 ggacgtgggt gatttcaaaa tatcaatcaa tgagggtctc ccctccggag tgccctgcac
4441 ctcccaatgg aattccatcg cccactggct cctcactctc tgtgcactct ctgaggttac
4501 aaacctgtcc cctgacatta ttcaggctaa ctctctcttt tctttctacg gtgatgatga
4561 aattgtgagt acagatataa aattggaccc agaaaaactg acagcaaaac tcaaggaata
4621 cgggttgaaa ccgacccgcc ctgacaaaac tgaagggcct cttgtcattt ccgaagacct
4681 gaatggccta accttcctgc ggagaaccgt gactcgcgac ccagcaggct ggtttggaaa
4741 gttggaacag agctcaatac tcagacaaat gtactggact aggggcccca accatgaaga
4801 tccatctgaa acaatgatac cacactccca gaggcccata caattgatgt ctttgctggg
4861 cgaggcagca ctccacggcc cagcattcta cagcaaaatc agtaaattgg tcattgcaga
4921 gttgaaggag ggtggcatgg atttttacgt gccaagacaa gaaccaatgt tcagatggat
4981 gagattctcg gatctgagca cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa
5041 tgaagatggc gtcgagtgac gccaccccat ctaatgatgg tgccgccggc ctcgtcccag
5101 agatcaacaa tgaggcaatg gcgctagatc cagtggcggg tgcagcgata gcagcacccc
5161 tcaccggcca gcaaaatata attgatccct ggattatgaa taattttgtg caagcacctg
5221 gtggtgagtt cacagtgtct cctaggaatt cccctggtga agtgctcctc aatttggaat
5281 tgggcccaga gataaacccc tatctggccc atcttgctag aatgtataat ggttatgcag
5341 gtgggtttga agtgcaggta gtcctggctg gaaatgcgtt tacagcagga aagataatct
5401 ttgcagctat accccctaac ttcccaattg acaatctaag tgcagcacag atcacaatgt
5461 gcccacatgt gattgtggat gtcaggcagc tggaaccagt caacctcccg atgcctgacg
5521 ttcgcaataa cttcttccac tacaaccaag ggtctgattc gagattgcgc ttggttgcaa
5581 tgctgtacac acctcttagg gcaaataact ctggggatga tgttttcact gtgtcttgta
5641 gagtgctgac tagacctagt cctgaatttt catttaactt ccttgtgcca cccactgtgg
5701 agtcaaagac aaaacctttt accctcccaa ttctgactat ttctgaaatg tctaattcta
5761 ggtttccagt gccgattgat tctctgcaca ccagcccaac tgagaatatt gttgtccagt
5821 gtcaaaatgg acgcgtcact cttgatggtg agttgatggg caccactcag ctcctaccta
5881 gtcaaatctg tgctttcagg ggcgtgctca ctagatcaac aagcagggct agtgaccagg
5941 ccgacacagc aacccctaga ctgttcaatt attattggca catacaattg gataatctaa
6001 atgggactcc ttatgatcct gcagaagaca taccaggccc cctagggaca ccagattttc
6061 ggggtagagt ctttggtgtg gccagccaaa gaaaccccga cagtacaact agagcacatg
6121 aagcaaaggt ggacacaaca gctggtcgct tcaccccaaa actaggctca ttagagatat
6181 ccactgaatc tggtgacttt gaccaaaacc aaccaacaag attcacccca gttggcattg
6241 gggttgacca tgagtcagac ttccagcaat ggtccttacc cgactactct ggtcagttca
6301 ctcacaacat gaacttagcc ccagctgttg ctcccaattt ccctggtgag cagctccttt
6361 tcttccgctc acagttacca tcttctggtg ggcgatccaa tgggattcta gattgcctgg
6421 tcccccaaga atgggtccag cacttctacc aagaatcagc ccccgcccaa acccaggtgg
6481 ctctggttag atatgtcaat cctgacactg gtagagtgtt gtttgaggcc aagctgcaca
6541 aattaggttt catgactata gctaagaatg gtgattctcc aataactgtc cccccaaatg
6601 gatactttag gtttgaatct tgggtgaacc cattttatac actcgccccc atgggaactg
6661 ggaatgggcg tagaagagtt caataatggc tggtgctttt atagcaggat tagctggtga
6721 tatattcaca aatactgtag ggtctttagt taatgcaggg gctaatgcta ttaatcaaaa
6781 agttgatttt gaaaataata aatatttgca aaatgcttcc ttcaaccatg ataaggaaat
6841 gttgaatgca cagattgagg caacaaagag attacaggct gatatgattg ctatcaaaca
6901 gggggttttg accgctggcg gcttttcccc cactgatgca gctcgtgggg caatcaacgc
6961 ccccatgaca aaagtcctag attggaatgg aacaaggtac tgggcaccaa gtgccacctc
7021 cacaacctcg gtgtcgggtg gcttcacaaa ccaggctgtg cacagaacca cgccaaattt
7081 taaaatgaac caggctccca gatccacacc cagcagtggg tcctcagtga ggtcactctc
7141 aacccaagtc actagtctga gctcacactc gtccgggtcg tctcgatcca gcgggtctac
7201 agttgctagc tcattaccat cctctaatag gactagggac tgggtcaatc agcaaaattt
7261 caatttggaa ccacacatgc ctgggtcact taggacagct tttgtcactc caccatctag
7321 tacagcctcc agttcaggca ctgtctcaac cgtgcccaaa aatgttttgg actcctggac
7381 atctgcgttt aacacgcgca gacagccgct attcgcacac cttcgtagaa ggggggagt
//