Typing tool
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Typing tool
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Complete norovirus genomes
| OM372490 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5065
ORF2: 5046..6668
ORF3: 6668..7474
LOCUS OM372490 7477 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS744 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372490
VERSION OM372490.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7477)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7477)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7477
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS744"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5065
/gene="ORF1"
CDS <1..5065
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29373.1"
/translation="VANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRP
PRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLN
QRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLF
WRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTG
FFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILAT
CDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGG
IGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVR
SIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTIN
SLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQ
RVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENK
GKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMW
KNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYE
LQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAI
KKCQIVYDGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQ
EALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANIDGCLKPKDDEEFVVS
SDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRD
RYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPED
FKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQ
GAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTG
ELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGND
YVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTK
FWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEA
AKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ
ASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMVRCARAFGG
LMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAAL
EIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLT
LCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKT
EGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPH
SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS
TWEGDRNLAPSFVNEDGVE"
mat_peptide <1..955
/gene="ORF1"
/product="p48"
mat_peptide 956..2053
/gene="ORF1"
/product="NTPase"
mat_peptide 2054..2590
/gene="ORF1"
/product="p22"
mat_peptide 2591..2989
/gene="ORF1"
/product="VPg"
mat_peptide 2990..3532
/gene="ORF1"
/product="Pro"
mat_peptide 3533..5062
/gene="ORF1"
/product="RdRp"
gene 5046..6668
/gene="ORF2"
CDS 5046..6668
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29374.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6668..7474
/gene="ORF3"
CDS 6668..7474
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29375.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKAEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSAAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQSTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN
1 tgttgccaac agcaacaacg acatcgcaaa atcttcaagt gacggtgtgt tttctaacat
61 ggctgtcact tttaagcggg ccctcggggc gcggcctaaa cagccgcccc cgaaggaaat
121 accacccaga cccccgcgac cacccacacc agaattggtc aaaaagatcc ctcctccccc
181 acccaacggg gaggatgaac tagtggtctc ttacaacgcc aaagatggcg tttccggact
241 gcctgagctc accactgtca gacaaccgga agaaaccaac acggcgttca gtgtcccccc
301 actcaaccaa agggagagca gggacgccaa ggagccacta actggaacaa tcattgaaat
361 gtgggatgga gaaatctacc attacggcct gtacgtggaa cgaggtctta tacttggtgt
421 gcacaagcca ccagcagcca tcagcctcgc taaggtcgag ctggcaccgc tctctttgtt
481 ctggagacct gtatacaccc cccagtacct tatctctcca gacactctta ggagattaca
541 tggagagtca ttcccctaca ctgcatttga caacaattgc tacgcctttt gttgttgggt
601 attagaccta aacgactcat ggctaagcag gagaatgatt cagagaacaa caggcttctt
661 caggccgtac caggattgga acaggaaacc cctccccact atggatgact ccaaattaaa
721 gaaggtagcc aacatattct tgtgcacttt gtcttcacta ttcaccaggc ccattaagga
781 cataataggg aagttgaaac ctctcaacat ccttaatatt ctggctacat gtgattggac
841 cttcgcaggc atagtggaat ccttaatact cttggcagaa ctctttggag ttttctggac
901 acccccagat gtgtctgcga tgatcgcccc cttgctaggt gattatgaac tgcaaggacc
961 cgaggacctt gcagtggaac tggtcccaat agtgatgggg gggataggtt tggtgctagg
1021 atttaccaaa gagaagatcg gaaagatgtt gtcatccgct gcatccactt taagagcttg
1081 caaagacctt ggtgcatacg gactggaaat cttaaaattg gtcatgaagt ggttcttccc
1141 aaagaaagag gaagcaaatg aactggccat ggtgagatcc atcgaggatg cagtactaga
1201 cctcgaggca attgaaaaca accacatgac caccctgctc aaagacaaag acagcttgac
1261 aacctacatg agaacccttg accttgagga ggagaaagcc agaaaactct caaccaaatc
1321 tgcttcaccc gatattgtgg gcacaatcaa ctctcttctg gcaagaatcg ctgctgcacg
1381 ctccctagtg catcgggcga aagaagagct ctccagcagg ccgagacctg tcgttgtaat
1441 gatatcggga agaccaggga tagggaaaac tcaccttgcc agggagctgg ccaagaagat
1501 cgcggcctcc ctcacagggg accagcgtgt gggccttatc ccacgcaatg gtgtcgacca
1561 ctgggacgca tacaagggcg aaagggttgt cctatgggac gactatggaa tgagcaaccc
1621 catccatgat gcccttaggt tgcaggagct tgctgacact tgccccctca cgctaaattg
1681 tgacagaatt gagaacaaag gaaaagtctt tgacagtgat gccataatta tcaccaccaa
1741 cctggccaac ccagcaccac tggattatgt caactttgaa gcgtgctcga gacgcattga
1801 tttcctcgtg tacgcagaag cccctgaggt ggagaaggca aagcgcgact tcccaggtca
1861 acctgacatg tggaagaacg ctttcagtcc tgacttctca cacataaaac tgtcattggc
1921 tccacagggt ggttttgaca agaacggcaa caccccgcat ggaaaagggg tcatgaagac
1981 cctcaccact ggctccctca tcgcccgagc atcagggtta ctccatgaga ggctagatga
2041 atatgaattg caaggcccag ccctcaccac tttcaacttt gaccgcaaca agatactcgc
2101 ttttagacag cttgctgctg aaaacaagta tgggctgatg gacacaatga gagttggaaa
2161 acagctcaag gatgtcaaga ctatgtcaga cctcaaacaa gcactcaaga acatcgcgat
2221 caagaagtgc cagatagtgt acgatggtag cacctacaca cttgaggctg atggcaaggg
2281 cagtgtgaaa gttgacaaag tgcaaagtgc cactgtgcag accaacaatg aactagccgg
2341 tgccctacac cacctaagat gcgctagaat cagatactat gttaagtgcg tccaggaggc
2401 actgtattcc atcatccaaa tcgctggggc tgcattcgtc accacgcgca tcgctaagcg
2461 catgaatata cagaatctct ggtccaagcc acaggtggaa gacacagaag agatggccaa
2521 catagatggt tgcctaaaac ccaaagatga tgaagagttt gtcgtttcat ccgacgacat
2581 caaaactgag ggcaagaaag ggaagaacaa gtccggccgt ggcaagaagc acacagcctt
2641 ttcaagtaaa gggctcagtg atgaggagta cgatgagtac aagagaatca gagaagaaag
2701 gaatggtaag tactccatag aagagtacct tcaggacaga gacaggtact acgaggaggt
2761 ggccattgcc agggcaaccg aagaggactt ctgtgaagaa gaagaggcca aaatccggca
2821 gaggattttc agaccaacaa ggaaacaacg caaagaagag agggcttctc tcggcttggt
2881 cacaggttct gaaatcagga agagaaaccc agaagacttc aaacccaagg gaaagctgtg
2941 ggctgatgac gacagaagtg ttgactacaa tgagaaactc aactttgagg ccccaccaag
3001 catctggtcg cggatagtca actttggttc aggctggggc ttctgggtct cccccagtct
3061 gtttataaca tcaacccatg tcatacccca aggtgcaaag gagttcttcg gagtccctat
3121 caagcaaatc cagatacaca agtcaggtga attctgccga ttgagattcc caaaaccaat
3181 cagaaccgat gtgacgggca tgattctaga agaaggtgcg cccgagggga ctgtggccac
3241 actgctcatc aagagaccaa ctggagagct catgcctctg gcagccagaa tggggaccca
3301 tgcaaccatg aaaattcagg ggcgcacagt tggagggcaa atgggtatgc tcctgacagg
3361 atccaacgcc aagagtatgg acctaggcac aacaccaggc gactgcggct gcccctacat
3421 ctacaagagg ggaaatgact acgtggtcat aggggtccat acggctgctg cccgtggagg
3481 aaacactgtc atatgtgcca cccagggaag tgagggagag gccacacttg aaggaggtga
3541 cagtaaaggg acatactgtg gcgcgccaat cttgggccca gggagcgctc cgaagctcag
3601 cactaagact aagttttgga gatcatccac aacaccactc ccacctggca cctacgaacc
3661 agcctacctc ggtggcaaag accctagagt caaaggtggc ccttcattgc aacaagttat
3721 gagggaccag ctgaagccat tcacagaacc cagaggcaaa ccaccaagac caaatgtgtt
3781 ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa acaattgatc caccccaaaa
3841 atggtcattt gcgcaagctt gcgcatccct tgacaaaacc acctccagcg gccacccgca
3901 ccacatgcgg aaaaacgact gttggaatgg ggagtccttc acaggaaagt tggctgacca
3961 agcctccaag gccaacctaa tgtttgaaga gggaaagaac atgactccag tctacacagg
4021 tgcacttaaa gatgagttgg taaagaccga taaagtgtat ggtaaggtca agaagaggct
4081 tctatggggt tcagatctgg cgaccatggt acggtgcgcc cgagcttttg gaggcctcat
4141 ggatgaactc aaggcacact gtgtcacact ccctgtcaga gttggtatga acatgaatga
4201 ggatggcccc atcatcttcg agaagcactc cagatataga tatcattatg atgctgacta
4261 ttcccggtgg gactcaacac aacaaaggga tgtgctggca gcagcactag aaatcatggt
4321 taagttctct ccagaaccac acctggccca gatagttgca gaagacctcc tttcccctag
4381 cgtgatggat gtgggtgact ttcaaatatc aataagtgag ggtctcccct ctggggtgcc
4441 ttgcacctcc cagtggaatt ccatcgccca ctggctcctc actctgtgtg cactctctga
4501 agtcacggac ctgtcccctg atatcattca ggccaactcc cttttctcct tctatggtga
4561 tgatgagatt gtaagcacag atataaagtt ggacccagag aggctaacag caaaactcaa
4621 ggagtacggg ctgaaaccaa cccgccccga caaaactgaa ggaccccttg tcatctctga
4681 agacctggat ggtctgacat tcctccggag aactgtgacc cgtgatccag ctggctggtt
4741 tggaaaattg gaacaaagtt caattcttag gcaaatgtac tggaccaggg gtcccaacca
4801 tgaagaccca tttgaaacaa tgataccaca ctcccaaaga cccatacaat tgatgtcctt
4861 gctgggcgag gctgcactcc acggcccggc attctacagc aaaattagca aattagtcat
4921 tgcagagttg aaggaaggtg gcatggattt ttacgtgccc agacaagagc caatgttcag
4981 atggatgaga ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt
5041 tgtgaatgaa gatggcgtcg agtgacgtca acccatctga tgggtccgca gccaacctcg
5101 tcccagaggt caacaatgag gttatggctc tggagcccgt tgttggtgcc gccattgcgg
5161 cacctgtagc gggccaacaa aatgtaattg acccctggat tagaaacaat tttgtacaag
5221 cccctggtgg agagtttaca gtatccccta gaaacgctcc aggtgaaata ctatggagcg
5281 cgcccttggg ccctgatcta aatccctact tgtctcattt ggccagaatg tacaatggtt
5341 atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa cgcgttcacc gccgggaagg
5401 tcatatttgc agcagtccca ccaaatttcc caactgaagg cttgagcccc agccaggtca
5461 ctatgttccc ccatatagta gtagatgtta ggcaactaga acctgtgttg attcccttac
5521 ccgacgttag gaataatttc tatcattaca atcaatcaaa tgaccccacc attaagttga
5581 tagcaatgtt gtatacacca cttagggcta ataatgctgg ggatgatgtc ttcacagttt
5641 cttgtcgagt tctcacgaga ccatcccccg attttgattt catatttcta gtgccaccca
5701 cagttgagtc aagaactaaa ccattctctg tcccagtttt gactgttgag gagatgacca
5761 attcaagatt ccccattcct ttggaaaagt tgttcacggg tcccagcagt gcctttgttg
5821 tccaaccaca aaacggtagg tgcacgactg atggcgtgct cctaggcacc acccaactgt
5881 ctcctgtcaa catctgcacc tttagaggag atgtcaccca tatcacaggt agtcataact
5941 atacaatgaa tttggcttct caaaattgga gcaactacga cccaacagaa gaaatcccag
6001 cccctctagg gactccagac tttgtgggga agattcaagg catgctcacc caaaccacaa
6061 ggacagatgg ctcaacacgc ggccacaaag ccacagtgta cactgggagc gccgattttg
6121 ctccaaaact gggtagagtt caatttgaaa ctgacacaaa caatgatttt gaggctaacc
6181 aaaacacaaa gttcacccca gttggtgtca tccaagatgg tggcaccact catcgaaatg
6241 aaccccaaca gtgggtgctc ccaagttact caggcaggaa cactcctaat gtgcatttgg
6301 cccccgctgt ggcccccact tttccgggtg agcaactcct tttctttaga tccaccatgc
6361 ccggatgcag cgggtacccc aacatggatt tggattgtct gctcccccag gaatgggtgc
6421 agtacttcta ccaggaggca gccccagcac aatctgatgt ggctctgcta agatttgtga
6481 atccagacac aggtagggtt ttgtttgaat gtaagcttca taaatcaggc tatgttacag
6541 tggctcacac tggccaacat gatttggtta tcccccccaa tggttatttt aggtttgatt
6601 cctgggtcaa ccagttttac acacttgccc ccatgggaaa tggagcgggg cgtagacgtg
6661 cactataatg gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact
6721 tggttccctt atcaatgctg gggctggggc catcaaccaa aaagctgagt ttgaaaataa
6781 tagaaaattg cagcaagcat ccttccaatt tagcagcaat ctacaacagg cttcctttca
6841 acatgacaaa gagatgctcc aagcacaaat tgaggctacc aaaaggttac aacaggaaat
6901 gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc tctgagacag atgcagcccg
6961 cggggcaatc aacgccccta tgacaaaagc cttggactgg agcgggacaa ggtactgggc
7021 tcctgatgct aggactacaa catacaatgc aggccgcttt tccacccccc aaccatcggg
7081 ggcgctgcca ggaagagcta attttaggga tgctgtccct gctcggggtt cctctagtaa
7141 gtcttctaat tcttctactg ctacttctgt gtattcaaat caaacaactt caacgagact
7201 tggttctgca gctggttctg gtaccagtgt ctcgagcctc ccgtcaactg caaggactag
7261 gagctgggtt gaggaccaaa gtaggaattt gtcacctttc atgagggggg cccacaacat
7321 atcgtttgtc accccaccat ctagcaggtc ctctagccaa agcacagtct caaccgtgcc
7381 taaagagatt ttggactcct ggactggcgc tttcaacacg cgcaggcagc cactcttcgc
7441 tcacattcgt aagcgagggg agtcacgagt gtaatgt
//