Typing tool
|
Complete norovirus genomes
OM372490 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5065 ORF2: 5046..6668 ORF3: 6668..7474LOCUS OM372490 7477 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS744 nonstructural polyprotein (ORF1) gene, partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds. ACCESSION OM372490 VERSION OM372490.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7477) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7477) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7477 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS744" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Mar-2019" /note="genotype: GII" gene <1..5065 /gene="ORF1" CDS <1..5065 /gene="ORF1" /codon_start=2 /product="nonstructural polyprotein" /protein_id="UJP29373.1" /translation="VANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRP PRPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLN QRESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLF WRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTG FFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILAT CDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGG IGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVR SIEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTIN SLLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQ RVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENK GKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMW KNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYE LQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAI KKCQIVYDGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLRCARIRYYVKCVQ EALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANIDGCLKPKDDEEFVVS SDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRD RYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPED FKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQ GAKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTG ELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGND YVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTK FWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEA AKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQ ASKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMVRCARAFGG LMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAAL EIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLT LCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKT EGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPH SQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLS TWEGDRNLAPSFVNEDGVE" mat_peptide <1..955 /gene="ORF1" /product="p48" mat_peptide 956..2053 /gene="ORF1" /product="NTPase" mat_peptide 2054..2590 /gene="ORF1" /product="p22" mat_peptide 2591..2989 /gene="ORF1" /product="VPg" mat_peptide 2990..3532 /gene="ORF1" /product="Pro" mat_peptide 3533..5062 /gene="ORF1" /product="RdRp" gene 5046..6668 /gene="ORF2" CDS 5046..6668 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP29374.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6668..7474 /gene="ORF3" CDS 6668..7474 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP29375.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKAEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSAAGSGTSVSSLPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQSTVSTVPKEILDSWTGAFNTRRQPLFAHIRKRGESRV" ORIGIN 1 tgttgccaac agcaacaacg acatcgcaaa atcttcaagt gacggtgtgt tttctaacat 61 ggctgtcact tttaagcggg ccctcggggc gcggcctaaa cagccgcccc cgaaggaaat 121 accacccaga cccccgcgac cacccacacc agaattggtc aaaaagatcc ctcctccccc 181 acccaacggg gaggatgaac tagtggtctc ttacaacgcc aaagatggcg tttccggact 241 gcctgagctc accactgtca gacaaccgga agaaaccaac acggcgttca gtgtcccccc 301 actcaaccaa agggagagca gggacgccaa ggagccacta actggaacaa tcattgaaat 361 gtgggatgga gaaatctacc attacggcct gtacgtggaa cgaggtctta tacttggtgt 421 gcacaagcca ccagcagcca tcagcctcgc taaggtcgag ctggcaccgc tctctttgtt 481 ctggagacct gtatacaccc cccagtacct tatctctcca gacactctta ggagattaca 541 tggagagtca ttcccctaca ctgcatttga caacaattgc tacgcctttt gttgttgggt 601 attagaccta aacgactcat ggctaagcag gagaatgatt cagagaacaa caggcttctt 661 caggccgtac caggattgga acaggaaacc cctccccact atggatgact ccaaattaaa 721 gaaggtagcc aacatattct tgtgcacttt gtcttcacta ttcaccaggc ccattaagga 781 cataataggg aagttgaaac ctctcaacat ccttaatatt ctggctacat gtgattggac 841 cttcgcaggc atagtggaat ccttaatact cttggcagaa ctctttggag ttttctggac 901 acccccagat gtgtctgcga tgatcgcccc cttgctaggt gattatgaac tgcaaggacc 961 cgaggacctt gcagtggaac tggtcccaat agtgatgggg gggataggtt tggtgctagg 1021 atttaccaaa gagaagatcg gaaagatgtt gtcatccgct gcatccactt taagagcttg 1081 caaagacctt ggtgcatacg gactggaaat cttaaaattg gtcatgaagt ggttcttccc 1141 aaagaaagag gaagcaaatg aactggccat ggtgagatcc atcgaggatg cagtactaga 1201 cctcgaggca attgaaaaca accacatgac caccctgctc aaagacaaag acagcttgac 1261 aacctacatg agaacccttg accttgagga ggagaaagcc agaaaactct caaccaaatc 1321 tgcttcaccc gatattgtgg gcacaatcaa ctctcttctg gcaagaatcg ctgctgcacg 1381 ctccctagtg catcgggcga aagaagagct ctccagcagg ccgagacctg tcgttgtaat 1441 gatatcggga agaccaggga tagggaaaac tcaccttgcc agggagctgg ccaagaagat 1501 cgcggcctcc ctcacagggg accagcgtgt gggccttatc ccacgcaatg gtgtcgacca 1561 ctgggacgca tacaagggcg aaagggttgt cctatgggac gactatggaa tgagcaaccc 1621 catccatgat gcccttaggt tgcaggagct tgctgacact tgccccctca cgctaaattg 1681 tgacagaatt gagaacaaag gaaaagtctt tgacagtgat gccataatta tcaccaccaa 1741 cctggccaac ccagcaccac tggattatgt caactttgaa gcgtgctcga gacgcattga 1801 tttcctcgtg tacgcagaag cccctgaggt ggagaaggca aagcgcgact tcccaggtca 1861 acctgacatg tggaagaacg ctttcagtcc tgacttctca cacataaaac tgtcattggc 1921 tccacagggt ggttttgaca agaacggcaa caccccgcat ggaaaagggg tcatgaagac 1981 cctcaccact ggctccctca tcgcccgagc atcagggtta ctccatgaga ggctagatga 2041 atatgaattg caaggcccag ccctcaccac tttcaacttt gaccgcaaca agatactcgc 2101 ttttagacag cttgctgctg aaaacaagta tgggctgatg gacacaatga gagttggaaa 2161 acagctcaag gatgtcaaga ctatgtcaga cctcaaacaa gcactcaaga acatcgcgat 2221 caagaagtgc cagatagtgt acgatggtag cacctacaca cttgaggctg atggcaaggg 2281 cagtgtgaaa gttgacaaag tgcaaagtgc cactgtgcag accaacaatg aactagccgg 2341 tgccctacac cacctaagat gcgctagaat cagatactat gttaagtgcg tccaggaggc 2401 actgtattcc atcatccaaa tcgctggggc tgcattcgtc accacgcgca tcgctaagcg 2461 catgaatata cagaatctct ggtccaagcc acaggtggaa gacacagaag agatggccaa 2521 catagatggt tgcctaaaac ccaaagatga tgaagagttt gtcgtttcat ccgacgacat 2581 caaaactgag ggcaagaaag ggaagaacaa gtccggccgt ggcaagaagc acacagcctt 2641 ttcaagtaaa gggctcagtg atgaggagta cgatgagtac aagagaatca gagaagaaag 2701 gaatggtaag tactccatag aagagtacct tcaggacaga gacaggtact acgaggaggt 2761 ggccattgcc agggcaaccg aagaggactt ctgtgaagaa gaagaggcca aaatccggca 2821 gaggattttc agaccaacaa ggaaacaacg caaagaagag agggcttctc tcggcttggt 2881 cacaggttct gaaatcagga agagaaaccc agaagacttc aaacccaagg gaaagctgtg 2941 ggctgatgac gacagaagtg ttgactacaa tgagaaactc aactttgagg ccccaccaag 3001 catctggtcg cggatagtca actttggttc aggctggggc ttctgggtct cccccagtct 3061 gtttataaca tcaacccatg tcatacccca aggtgcaaag gagttcttcg gagtccctat 3121 caagcaaatc cagatacaca agtcaggtga attctgccga ttgagattcc caaaaccaat 3181 cagaaccgat gtgacgggca tgattctaga agaaggtgcg cccgagggga ctgtggccac 3241 actgctcatc aagagaccaa ctggagagct catgcctctg gcagccagaa tggggaccca 3301 tgcaaccatg aaaattcagg ggcgcacagt tggagggcaa atgggtatgc tcctgacagg 3361 atccaacgcc aagagtatgg acctaggcac aacaccaggc gactgcggct gcccctacat 3421 ctacaagagg ggaaatgact acgtggtcat aggggtccat acggctgctg cccgtggagg 3481 aaacactgtc atatgtgcca cccagggaag tgagggagag gccacacttg aaggaggtga 3541 cagtaaaggg acatactgtg gcgcgccaat cttgggccca gggagcgctc cgaagctcag 3601 cactaagact aagttttgga gatcatccac aacaccactc ccacctggca cctacgaacc 3661 agcctacctc ggtggcaaag accctagagt caaaggtggc ccttcattgc aacaagttat 3721 gagggaccag ctgaagccat tcacagaacc cagaggcaaa ccaccaagac caaatgtgtt 3781 ggaagctgcc aagaaaacca tcatcaatgt ccttgagcaa acaattgatc caccccaaaa 3841 atggtcattt gcgcaagctt gcgcatccct tgacaaaacc acctccagcg gccacccgca 3901 ccacatgcgg aaaaacgact gttggaatgg ggagtccttc acaggaaagt tggctgacca 3961 agcctccaag gccaacctaa tgtttgaaga gggaaagaac atgactccag tctacacagg 4021 tgcacttaaa gatgagttgg taaagaccga taaagtgtat ggtaaggtca agaagaggct 4081 tctatggggt tcagatctgg cgaccatggt acggtgcgcc cgagcttttg gaggcctcat 4141 ggatgaactc aaggcacact gtgtcacact ccctgtcaga gttggtatga acatgaatga 4201 ggatggcccc atcatcttcg agaagcactc cagatataga tatcattatg atgctgacta 4261 ttcccggtgg gactcaacac aacaaaggga tgtgctggca gcagcactag aaatcatggt 4321 taagttctct ccagaaccac acctggccca gatagttgca gaagacctcc tttcccctag 4381 cgtgatggat gtgggtgact ttcaaatatc aataagtgag ggtctcccct ctggggtgcc 4441 ttgcacctcc cagtggaatt ccatcgccca ctggctcctc actctgtgtg cactctctga 4501 agtcacggac ctgtcccctg atatcattca ggccaactcc cttttctcct tctatggtga 4561 tgatgagatt gtaagcacag atataaagtt ggacccagag aggctaacag caaaactcaa 4621 ggagtacggg ctgaaaccaa cccgccccga caaaactgaa ggaccccttg tcatctctga 4681 agacctggat ggtctgacat tcctccggag aactgtgacc cgtgatccag ctggctggtt 4741 tggaaaattg gaacaaagtt caattcttag gcaaatgtac tggaccaggg gtcccaacca 4801 tgaagaccca tttgaaacaa tgataccaca ctcccaaaga cccatacaat tgatgtcctt 4861 gctgggcgag gctgcactcc acggcccggc attctacagc aaaattagca aattagtcat 4921 tgcagagttg aaggaaggtg gcatggattt ttacgtgccc agacaagagc caatgttcag 4981 atggatgaga ttctcagatc tgagcacgtg ggagggcgat cgcaatctgg ctcccagttt 5041 tgtgaatgaa gatggcgtcg agtgacgtca acccatctga tgggtccgca gccaacctcg 5101 tcccagaggt caacaatgag gttatggctc tggagcccgt tgttggtgcc gccattgcgg 5161 cacctgtagc gggccaacaa aatgtaattg acccctggat tagaaacaat tttgtacaag 5221 cccctggtgg agagtttaca gtatccccta gaaacgctcc aggtgaaata ctatggagcg 5281 cgcccttggg ccctgatcta aatccctact tgtctcattt ggccagaatg tacaatggtt 5341 atgcaggtgg ttttgaagtg caggtaattc tcgcggggaa cgcgttcacc gccgggaagg 5401 tcatatttgc agcagtccca ccaaatttcc caactgaagg cttgagcccc agccaggtca 5461 ctatgttccc ccatatagta gtagatgtta ggcaactaga acctgtgttg attcccttac 5521 ccgacgttag gaataatttc tatcattaca atcaatcaaa tgaccccacc attaagttga 5581 tagcaatgtt gtatacacca cttagggcta ataatgctgg ggatgatgtc ttcacagttt 5641 cttgtcgagt tctcacgaga ccatcccccg attttgattt catatttcta gtgccaccca 5701 cagttgagtc aagaactaaa ccattctctg tcccagtttt gactgttgag gagatgacca 5761 attcaagatt ccccattcct ttggaaaagt tgttcacggg tcccagcagt gcctttgttg 5821 tccaaccaca aaacggtagg tgcacgactg atggcgtgct cctaggcacc acccaactgt 5881 ctcctgtcaa catctgcacc tttagaggag atgtcaccca tatcacaggt agtcataact 5941 atacaatgaa tttggcttct caaaattgga gcaactacga cccaacagaa gaaatcccag 6001 cccctctagg gactccagac tttgtgggga agattcaagg catgctcacc caaaccacaa 6061 ggacagatgg ctcaacacgc ggccacaaag ccacagtgta cactgggagc gccgattttg 6121 ctccaaaact gggtagagtt caatttgaaa ctgacacaaa caatgatttt gaggctaacc 6181 aaaacacaaa gttcacccca gttggtgtca tccaagatgg tggcaccact catcgaaatg 6241 aaccccaaca gtgggtgctc ccaagttact caggcaggaa cactcctaat gtgcatttgg 6301 cccccgctgt ggcccccact tttccgggtg agcaactcct tttctttaga tccaccatgc 6361 ccggatgcag cgggtacccc aacatggatt tggattgtct gctcccccag gaatgggtgc 6421 agtacttcta ccaggaggca gccccagcac aatctgatgt ggctctgcta agatttgtga 6481 atccagacac aggtagggtt ttgtttgaat gtaagcttca taaatcaggc tatgttacag 6541 tggctcacac tggccaacat gatttggtta tcccccccaa tggttatttt aggtttgatt 6601 cctgggtcaa ccagttttac acacttgccc ccatgggaaa tggagcgggg cgtagacgtg 6661 cactataatg gctggagctt tctttgctgg attggcatct gatgtccttg gctctggact 6721 tggttccctt atcaatgctg gggctggggc catcaaccaa aaagctgagt ttgaaaataa 6781 tagaaaattg cagcaagcat ccttccaatt tagcagcaat ctacaacagg cttcctttca 6841 acatgacaaa gagatgctcc aagcacaaat tgaggctacc aaaaggttac aacaggaaat 6901 gatgaaagtt aagcaggcaa tgctcctaga gggtgggttc tctgagacag atgcagcccg 6961 cggggcaatc aacgccccta tgacaaaagc cttggactgg agcgggacaa ggtactgggc 7021 tcctgatgct aggactacaa catacaatgc aggccgcttt tccacccccc aaccatcggg 7081 ggcgctgcca ggaagagcta attttaggga tgctgtccct gctcggggtt cctctagtaa 7141 gtcttctaat tcttctactg ctacttctgt gtattcaaat caaacaactt caacgagact 7201 tggttctgca gctggttctg gtaccagtgt ctcgagcctc ccgtcaactg caaggactag 7261 gagctgggtt gaggaccaaa gtaggaattt gtcacctttc atgagggggg cccacaacat 7321 atcgtttgtc accccaccat ctagcaggtc ctctagccaa agcacagtct caaccgtgcc 7381 taaagagatt ttggactcct ggactggcgc tttcaacacg cgcaggcagc cactcttcgc 7441 tcacattcgt aagcgagggg agtcacgagt gtaatgt //