Typing tool
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Typing tool
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Complete norovirus genomes
| OM372489 | GII.2 | |
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| GII.P16 |
ORF1: 1..5050
ORF2: 5031..6659
ORF3: 6659..7436
LOCUS OM372489 7436 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS696 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372489
VERSION OM372489.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7436)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7436)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7436
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS696"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5050
/gene="ORF1"
CDS <1..5050
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29370.1"
/translation="NDKEKSSGEGLFTNMSSTLKKALGARPKQPAPRDKPQKPPRPPT
PELVKRIPPPPPNGEEEEEPVIRYEVKSGISGLPELTTVPQPDVANTAFSVPPLSLRE
NREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISMAKVELTPLSLYWRV
VYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGFFR
PYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKIKPLNILNILATCDW
TFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGL
VLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRAIE
DAVLDLEAIENNHMTALLKDKDSLATYMKTLDMEEEKARRLSTKSASPDIVGTINALL
ARIAAARSLVHRAKEELSSRMRPVVVMISGKPGIGKTHLAREVARKVASTLTGDQRVG
LIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCPLTLNCDRIENKGKV
FDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKDA
FRPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERMDEFELQG
PTITTFNFDRNRITAFRQLAAENKYGLVDTMKVGNQLKGVKTMEELKQAIRNVTIKRC
QIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKHARIRYYVKCVQEAV
YSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPKSEDDEFIISSKDIK
EEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEE
LAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGSEIRKRNPDDFKPKG
KLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLFITSTHVIPAGITEA
FGVPIKQVQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVATVLIKRPTGELMPL
AARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGCPYIYKRGNDYIAIG
VHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGGAPKLSTKTKFWRSS
NTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPSVLEAAKQTI
INVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNGETFTGKLADQASKAN
LMFEEGKHMTPVYTAALKDELVKTEKIYGRIKKRLLWGSDLSTMIRCARSFGGLMDEM
KAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVR
FSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQWNSIAHWLLTLCALS
EVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYGLKPTRPDKTEGPLI
ISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHEDPNETMIPHSQRPI
QLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGD
RNLAPNFVNEDGVE"
mat_peptide <1..946
/gene="ORF1"
/product="p48"
mat_peptide 947..2044
/gene="ORF1"
/product="NTPase"
mat_peptide 2045..2575
/gene="ORF1"
/product="p22"
mat_peptide 2576..2974
/gene="ORF1"
/product="VPg"
mat_peptide 2975..3517
/gene="ORF1"
/product="Pro"
mat_peptide 3518..5047
/gene="ORF1"
/product="RdRp"
gene 5031..6659
/gene="ORF2"
CDS 5031..6659
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29371.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPFLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNMNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6659..>7436
/gene="ORF3"
CDS 6659..>7436
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29372.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GSSHGTTSSNSTRSTSLSQSTVSRATSRTGEWVRDQNRSLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 caacgacaaa gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa
61 gaaagccctc ggggctaggc ccaaacagcc tgccccgaga gacaaaccac aaaagccccc
121 aagaccacca actcccgagt tggtcaagag gataccccct cctccaccta acggcgaaga
181 agaagaagaa ccagtcatta ggtatgaggt taagagtggg atctccggcc tacccgagct
241 cacaacagtc ccccaaccgg acgtggccaa cacagcattc agtgttccac cactgagctt
301 gagagaaaac agggaggcca aggagccgct aacaggggca atattagaga tgtgggatgg
361 agagatatac cactatggcc tgtacgtgga gaaaggctta gtgttgggtg tgcacaaacc
421 acctgcagcc ataagcatgg caaaagtgga gctgacgccg ttgtcattgt actggcgtgt
481 ggtgtacact ccccaatacc tcatctcccc tgaaaccctc aggaggctca acggagaggc
541 attcccttac accgcctttg acaacaactg ctacgccttt tgctgctggg tgttagacct
601 caatgactca tggcttagca ggaggatgat acaaagaaca acgggcttct tcagacctta
661 ccaagagtgg aacagaaaac ccctgcctac catggatgac tccaaaatta agaaggtagc
721 aaatatattc ctatgttcat tgtccacatt attcaccaga cccataaaag acctcatagg
781 aaaaattaaa ccgttgaaca tattgaatat cctggcaacg tgtgactgga cttttgccgg
841 aatagtggag tctctgatat tatttgctga actcttcgga gttttctgga cacccccaga
901 tgtgtctgct atgatcgctc ccttactcgg ggactacgag ttgcaagggc cagaagacct
961 cgccgttgaa ctcgtacctg tggtaatggg ggggattggt ttggtgttgg gattcaccaa
1021 agagaaaatt ggcaaaatgt tgtcctcagc agcatcaaca ctcagggctt gcaaagatct
1081 tggtgcctat ggtttagaga tactcaaatt ggtcatgaag tggttcttcc caaagaaaga
1141 ggaggccaat gagctagcta tggtgagggc catagaggat gctgtattag accttgaggc
1201 aatagaaaat aaccacatga cagccctgtt gaaagacaaa gacagcttag caacatacat
1261 gaaaacactg gacatggagg aggagaaagc caggaggttg tccacaaaat ctgcatcccc
1321 tgacatagtt gggacaatca acgccctgct ggctcgaata gcagcggcca ggtcattagt
1381 ccacagggcc aaggaagagc tatctagtag gatgaggcca gtagttgtta tgatatctgg
1441 caagccagga ataggcaaaa cccatctggc cagggaggtg gcaagaaagg tggcatccac
1501 tctcacaggg gatcaaagag tcgggctcat accacgaaat ggtgtggacc attgggatgc
1561 atacaaaggt gagagagtcg tgctgtggga cgactatggc atgagtaacc ctattcatga
1621 tgctcttcgc atacaagaat tggctgatac gtgtcccctt accttaaatt gtgacagaat
1681 tgaaaataag ggaaaagttt ttgacagtga agtcataata attacaacaa accttgccaa
1741 tccagcccca cttgattatg tcaactttga ggcctgttcc aggagaattg atttcctggt
1801 gtacgctgag gcaccagaag tagaaaaggc aaaacgggac tttcctggtc agccagatat
1861 gtggaaggac gccttcaggc cggacttttc acacatcaag ctacagcttg caccccaggg
1921 tggctttgac aagaatggca acaccccaca tgggaaagga gtgatgaaga ccctcactac
1981 cggttctctg attgcccgtg catcaggcct actgcatgag aggatggatg aatttgaact
2041 ccaaggcccc acaatcacca ccttcaattt cgaccgaaac agaatcacgg cgttcagaca
2101 attggctgca gaaaacaagt atggattggt ggataccatg aaagttggca atcaattaaa
2161 aggagtgaaa accatggaag aactcaaaca agcaatcagg aatgtgacca tcaagaggtg
2221 ccagatcatc tacggtggtt ccacgtatga ccttgaatct gatggcaagg gcaaagtttt
2281 ggtggaaaag gtcaagaaca cctctgtaca gaccaataac gagttggctg gggccctgca
2341 ccatctcaaa catgcccgaa tcaggtacta tgtcaaatgt gtgcaagaag cagtctattc
2401 catcatacaa attgccggcg ctgcgtttgt caccacgcgc atcgcacgcc gcatgaacat
2461 acaagaactc tggtcgaagc cacaactaga ccaaaatgaa tcagagacta aggaagaggc
2521 ccccaagtca gaagatgacg aattcatcat atcttctaag gacatcaagg aggaaggaaa
2581 gaagggcaaa aacaaaactg gccgtggcaa gaaacacact gcattctcca gcaagggctt
2641 gagcgatgag gagtacgacg agtacaagag gataagagaa gagagaaatg ggaagtactc
2701 tatagaggag tatcttcaag acagagacag gtactatgag gagctcgcca ttgccaaggc
2761 cacggaagaa gacttctgtg aagaggagga gatcaaaatc cgtcagagaa ttttccgtcc
2821 caccaggaaa caaagaaagg aagagagggc cacattaggg ctagtaacag gttcagaaat
2881 cagaaaaaga aaccctgatg acttcaaacc caaagggaag ctgtgggccg atgacaacag
2941 gagtgttgat tacaatgaga aactggactt tgaggccccc ccaagcatat ggtctaggat
3001 tgtgagcttt ggctctggct ggggcttctg ggtgtcacca agccttttca taacatcaac
3061 tcatgtaatc cccgcaggta taacagaagc atttggagtc cccatcaaac aagttcagat
3121 ccacaaatca ggcgaatttt gccgattcag attcccaaaa ccaattagac cagatgtgac
3181 aggaatgatc ttggaagaag gtgcgcctga gggcaccgtg gcaactgtgc tcatcaaacg
3241 ccccaccgga gagctcatgc ctcttgcagc cagaatggga acacacgcaa ccatgaaaat
3301 tcaaggccgc atggttggcg gacagatggg tatgttgctc actggatcaa atgctaaagg
3361 aatggacttg ggaacaactc ctggtgactg tggctgtcct tacatctata aaaggggcaa
3421 tgactatata gccattgggg tgcacactgc agcagcccgt ggtggaaaca ctgtcatctg
3481 tgccacacag ggaagcgagg gtgaggcaac tcttgagggt ggagatgaca aaggaacata
3541 ctgtggggca cccattctag gccctggggg tgcaccaaaa ttgagcacca aaaccaaatt
3601 ttggaggtca tcgaacacgc cccttccacc agggacatat gagcctgcct acctcggtgg
3661 ccgcgatccg cgtgttaagg gtgggccttc cctgcagcag gtgatgagag atcagttgaa
3721 gccattcact gaacccaggg gcaaacctcc aagaccaagt gtattggaag cagccaaaca
3781 aaccatcatc aatgtcctcg aacaaaccct ggaccctcca caaaaatgga catacgcaca
3841 ggcgtgcgcc tcacttgaca aaaccacttc cagcgggcac ccccatcacg cccgaaagaa
3901 tgaattctgg aatggtgaga ccttcactgg taaactggct gaccaagcat caaaagcaaa
3961 cctaatgttt gaggaaggga aacacatgac accagtgtac acagcagcac tcaaggacga
4021 gctagtcaag actgagaaaa tttatggaag gatcaagaag agactgctct ggggctctga
4081 cttgtccacc atgatccggt gcgctaggtc atttggtggg cttatggacg agatgaaggc
4141 acactgcata tcactcccag ttcgagttgg catgaatatg aatgaagatg gcccaataat
4201 atttgagaaa cattccagat acaaatatca ctatgatgca gactactctc gttgggattc
4261 aacacaacag agggcagttc tagcagcagc cttggaaatc atggtcagat tctctgcaga
4321 accacaattg gcacaaatag tcgctgagga tctgctggcc cctagtgtag tagatgtagg
4381 agactttaaa atcacaataa atgaagggct cccttctggt gtgccatgca cttctcaatg
4441 gaactccatc gcacactggc tgctaactct ctgtgccttg tctgaagtca ccaaactatc
4501 ccctgacatt atacaggcaa attccatgtt ctcattttac ggtgatgacg agattgtcag
4561 caccgacata aaattggacc ctgaacagtt aaccgccaaa ttgaaggagt acggcctgaa
4621 accaacccgc ccagacaaaa ccgagggacc cctgattatc agtgaagatt tgaacggtct
4681 cactttcctc cgaaggacgg tgactcgtga cccagctggc tggtttggaa aactggacca
4741 aagctcaatt ttgaggcaga tgtactggac tagaggacca aatcatgaag accccaatga
4801 gacaatgata ccccattccc aaagacccat acagctcatg gcactgcttg gtgaagcctc
4861 tcttcacgga ccctctttct acagtaaaat cagtaaattg gtcataactg aactcaaaga
4921 aggtgggatg gacttttacg tgccaaggca ggaacccatg ttcaggtgga tgaggttctc
4981 tgacttgagc acgtgggagg gcgatcgcaa tctggctccc aattttgtga atgaagatgg
5041 cgtcgaatga cgccgctcca tctactgatg gtgcagccgg cctcgtgcca gaaagtaaca
5101 atgaggtcat ggctcttgaa cccgtggctg gtgccgcctt ggcagccccg gtcaccggtc
5161 aaacaaatat tatagaccct tggatcagag caaattttgt ccaggccccc aatggtgaat
5221 ttacagtctc tccccgaaat gcccctggtg aagtgctact gaatctagag ttgggtccag
5281 aattaaatcc ttttctggca catttagcaa gaatgtacaa tgggtatgcc ggtgggatgg
5341 aggtgcaggt catgttggct gggaacgcgt tcacagccgg caagttggtc ttcgccgccg
5401 tgccacccca cttcccggtt gaaaacctta gcccacagca aatcactatg ttccctcatg
5461 tgatcataga tgtgagaacc ttggaacctg ttttattacc actccctgat gttaggaata
5521 acttcttcca ttataaccag aaagatgatc ccaagatgag aattgtggct atgctttata
5581 cccccctcag gtctaatggt tctggtgatg atgtgtttac agtctcctgt agagtgttga
5641 ctagaccttc ccctgacttt gacttcacat acctggtgcc accaacagtg gagtctaaaa
5701 caaagccatt caccctccca atccttacac ttggggaact ttccaattct aggttcccag
5761 tgtccataga ccagatgtac accagcccta atgaaattat atcagtgcag tgtcaaaatg
5821 gtaggtgtac actggacggg gagctccaag ggacaacaca actccaagtc agtggcattt
5881 gtgctttcaa aggtgaagtg accgcccact tgcatgacaa tgatcaccta tataatgtca
5941 ccatcacaaa tatgaatggg tccccttttg atccctccga ggatatccct gcccctttgg
6001 gtgtgcctga cttccaggga agggtttttg gtatcatctc ccaaagagat aaacacaata
6061 gtcctgggca taatgaacca gcaaacaggg gacacgacgc tgtggtccct acttacacag
6121 cacagtacac tccaaaactt ggacaaattc aaattggcac atggcaaact gacgacctta
6181 cagtcaacca accagtcaaa ttcaccccag ttggactcaa tgacactgaa cactttaacc
6241 aatgggtagt ccctaggtat gctggtgccc taaacctcaa tacaaacctt gccccttctg
6301 ttgctccagt atttccagga gagcgcctgc tcttcttcag atcatacatt cccctcaagg
6361 gcggttatgg aaacccagcc attgattgcc tactaccaca agagtgggtg cagcacttct
6421 atcaggaagc agccccttca atgagtgagg tggccctcgt cagatacatc aacccggaca
6481 ctggtcgggc actgtttgag gccaagctcc acagagctgg tttcatgaca gtctcgagca
6541 acaccagtgc cccggtggtt gtgcctgcca acgggtactt cagatttgat tcttgggtga
6601 accaatttta ttctctcgcc cccatgggaa ctgggaatgg gcgtagaagg gttcaataat
6661 ggctggagct tttgtagctg gtcttgcagg ggacgtgctc agcaatgggc ttagttcatt
6721 aatcaatgca ggtgctaatg caataaatca gagggcagaa tttgatttta atcaaaaatt
6781 gcagcaaaat tcttttaatc atgataagga gatgttgcag gctcagattc aggcaactaa
6841 gcagctgcag gcagacatga tggctataaa acaaggggtc ttgaccgctg gcggcttttc
6901 ccctgctgat gcagccagag gtgctgtgaa cgcgcccatg acacaggcgc tggattggaa
6961 tggcacaagg tattgggcac caaactccat gaggaccaca tcttattccg gaaaattcac
7021 atcaaccgcc ccagtgaggc aggctgactt ccaacacacc caaagccggc cttcgagtgg
7081 ctcctctgtg tcttcctttg ccacccagtc ttcaaggcca actctgacca caaccactgg
7141 ttcctcacat ggcacaacct catcaaattc aactcgcagc acaagcctct cccaatcaac
7201 ggtctccaga gctacatcta ggactggtga gtgggttaga gatcaaaata gaagtttgga
7261 accctacatg catggtgcct tacagacagc ctttgtcacc ccaccttcca gcagggcatc
7321 tgacgggaca gtctcaaccg tccctaaagg tgttttggac tcctggacac ctgcgtttaa
7381 cactcgcagg cagccgcttt ttgcacacct ccgtaagagg ggggagtcac aagctt
//