Typing tool
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Typing tool
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Complete norovirus genomes
| OM372488 | GII.2 | |
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| GII.P16 |
ORF1: 1..5092
ORF2: 5073..6701
ORF3: 6701..7480
LOCUS OM372488 7512 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS695 nonstructural polyprotein (ORF1) gene,
partial cds; and VP1 (ORF2) and VP2 (ORF3) genes, complete cds.
ACCESSION OM372488
VERSION OM372488.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7512)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7512)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7512
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS695"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Mar-2019"
/note="genotype: GII"
gene <1..5092
/gene="ORF1"
CDS <1..5092
/gene="ORF1"
/codon_start=2
/product="nonstructural polyprotein"
/protein_id="UJP29367.1"
/translation="ASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARPKQP
APRDRPQKPPRPPTPELVKRIPPPPPNGEEEEGPVIRYEVKSGISGLPELTTVPQPDV
ANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAISM
ARVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLNDSW
LSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIGKI
KPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDI
AVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPK
KEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLSTK
SASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREVA
RKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTCP
LTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKA
KRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARAS
GLLHERMDEFELQGPTITTFNFDRNKITAFRQLAAENKYGLVDTMKVGNQLKGVKTME
ELKQAIRNVTIKRCQIIYGGSTYDLESDGKGKVLVEKVKNTSVQTNNELAGALHHLKH
ARIRYYVKCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPQLDQNESETKEEAPK
SEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYS
IEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTGS
EIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSLF
ITSTHVIPAGITEAFGVPIKQIQIHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTVA
TVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCGC
PYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPGD
APKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRGK
PPRPGVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWNGE
TFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTEKVYGKIKKRLLWGSDLSTM
IRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDSTQ
QRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKITINEGLPSGVPCTSQW
NSITHWLLTLCALSEVTKLSPDIIQANSMFSFYGDDEIVSTDIKLDPEQLTAKLKEYG
LKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNHE
DPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPMF
RWMRFSDLSTWEGDRNLAPNFVNEDGVE"
mat_peptide <1..988
/gene="ORF1"
/product="p48"
mat_peptide 989..2086
/gene="ORF1"
/product="NTPase"
mat_peptide 2087..2617
/gene="ORF1"
/product="p22"
mat_peptide 2618..3016
/gene="ORF1"
/product="VPg"
mat_peptide 3017..3559
/gene="ORF1"
/product="Pro"
mat_peptide 3560..5089
/gene="ORF1"
/product="RdRp"
gene 5073..6701
/gene="ORF2"
CDS 5073..6701
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29368.1"
/translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLNLELGPELNPYLAHLARMYNGYAGG
MEVQVMLAGNAFTAGKLVFAAVPPHFPIENLSPQQITMFPHVIIDVRTLEPVLLPLPD
VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEIISVQCQNGRCTLDGELQGTT
QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYISLKGGYGNPA
IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
gene 6701..7480
/gene="ORF3"
CDS 6701..7480
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29369.1"
/translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
TRYWAPNSMRTTSYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
GPSHGTASSNSTRSTSLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN
1 ggcgtctaac gacgctaccg ttgccgttgc ttgcaacaac aacaacgaca aagaaaaatc
61 ttcaggtgaa ggcttattca caaatatgtc ttccacctta aagaaagccc tcggggctag
121 gcccaaacag cctgccccga gagacagacc acaaaagccc ccaagaccac caactcccga
181 gttggtcaag aggatacccc ctcctccacc taatggcgaa gaagaagaag gaccagtcat
241 taggtatgag gttaaaagtg ggatctctgg cctgcccgag ctcacaacag tcccccaacc
301 ggacgtggcc aacacagcat tcagtgttcc accactgagc ttgagagaaa acagggaggc
361 caaggagccg ctaacggggg caatattaga gatgtgggat ggagagatat accactatgg
421 cctgtacgtg gagaaaggct tagtgttggg tgtgcacaaa ccacctgcag ccataagcat
481 ggcaagagtg gagctgacgc cgttgtcatt gtactggcgt gtggtgtaca ctccccaata
541 cctcatctcc cctgaaaccc tcaggaggct caacggagag gcattccctt acaccgcctt
601 tgacaacaac tgctatgcct tttgctgctg ggtgttagac ctcaatgact catggcttag
661 taggaggatg gtacaaagaa caacgggctt cttcagacct taccaagagt ggaacagaaa
721 acccctgcct accatggatg actccaaaat taagaaggta gcaaatatat tcctgtgttc
781 attgtccaca ttgttcacca gacccataaa agacctcata ggaaaaatta aaccactgaa
841 catattgaat atcctggcaa cgtgtgactg gacttttgcc ggaatagtgg agtctctgat
901 actacttgct gaactcttcg gagttttctg gacaccccca gatgtgtctg ctatgatcgc
961 tcccttactc ggggactacg agttgcaagg gccagaagac atcgccgttg aactcgtacc
1021 tgtggtaatg ggggggattg gtttggtgtt gggattcacc aaagagaaaa ttggcaaaat
1081 gttgtcctca gcagcatcaa cactcagggc ttgcaaagat cttggtgcct atggcttaga
1141 gatactcaaa ttggtcatga agtggttctt cccaaagaaa gaggaggcca atgagctagc
1201 tatggtgagg gccatagagg atgctgtact agaccttgag gcaatagaaa ataaccacat
1261 gacaaccctg ttgaaagaca aagacagctt agcaacatat atgaaaacac tggacatgga
1321 ggaggagaaa gccaggaggt tgtccacaaa atctgcatcc cctgacatag ttgggacaat
1381 caacgccctg ctggctcgaa tagcagcggc caggtcatta gtccacaggg ccaaagaaga
1441 gctatctagc aggataaggc cagtagttgt tatgatatct ggcaaaccag gaataggcaa
1501 aactcatctg gccagggagg tggcaagaaa ggtggcgtcc actctcacag gggatcaaag
1561 agtcggactc ataccacgaa acggtgtgga ccattgggat gcatacaaag gtgagagagt
1621 cgtgctgtgg gacgactatg gcatgagtaa ccctattcat gatgctcttc gcatacaaga
1681 attggctgat acgtgtcccc ttaccttaaa ttgtgacaga atcgaaaata agggaaaagt
1741 ttttgacagt gaagtcataa taattacaac aaaccttgcc aatccagccc cacttgatta
1801 tgtcaacttt gaggcctgtt ccaggaggat tgatttcctg gtgtatgctg aggcaccaga
1861 agtagaaaag gcaaaacggg actttcctgg tcagccagat atgtggaagg acgctttcaa
1921 gccggacttt tcacacatca agctacagct tgcaccccaa ggcggctttg acaagaatgg
1981 caacacccca catgggaaag gagtgatgaa gaccctcact accggttctc tgattgcccg
2041 tgcatcaggc ctactgcatg agaggatgga tgaatttgaa ctccaaggtc ccacaatcac
2101 caccttcaat ttcgaccgga acaaaatcac ggcattcaga caattggctg cagaaaacaa
2161 gtatggattg gtggacacca tgaaagttgg caatcaatta aaaggggtga aaaccatgga
2221 agaactcaaa caagcaatca ggaatgtgac catcaagagg tgccagatca tctacggtgg
2281 ttccacgtat gaccttgaat ctgacggcaa gggcaaagtt ttggtggaaa aggtcaagaa
2341 cacctctgta cagaccaaca acgagttggc tggggccctg caccatctca aacatgcccg
2401 aatcaggtac tatgtcaaat gtgtgcaaga agcagtctat tccatcatac aaattgccgg
2461 tgctgcgttt gtcaccacgc gcattgcacg ccgcatgaac atacaagaac tttggtcgaa
2521 gccacaacta gatcaaaatg aatcagagac taaggaagag gcccccaagt cagaagatga
2581 cgagttcatt atatcttcta aggacatcaa ggaggaagga aagaagggca aaaacaaaac
2641 tggccgtggc aagaagcaca ctgcattctc cagcaagggc ttgagcgatg aggagtatga
2701 cgagtacaag aggataagag aagagagaaa tgggaagtac tctatagagg agtatcttca
2761 agacagagac agatactatg aggagctcgc cattgccaag gccacggaag aagacttctg
2821 tgaagaggag gagatcaaaa tccgtcagag aattttccgt cccaccagga aacaaagaaa
2881 ggaagagagg gccacattag ggctagtaac aggttcagaa atcagaaaaa gaaaccctga
2941 tgacttcaaa cccaaaggga agctgtgggc cgatgacaac aggagtgttg actacaatga
3001 gaaactggac tttgaggccc ccccaagcat atggtctagg attgtgagct ttggttctgg
3061 ctggggcttc tgggtgtcac caagcctttt cataacatca actcatgtaa tccccgcagg
3121 cataacagaa gcatttggag ttcccatcaa acaaattcag atccacaaat caggcgaatt
3181 ttgccgattt agattcccaa aaccaattag accagatgtg acaggaatga tcttggaaga
3241 gggtgcgcct gagggcaccg ttgcaactgt gctcatcaaa cgccccaccg gagagctcat
3301 gcctcttgca gccagaatgg gaacacacgc aaccatgaaa attcaaggcc gcatggttgg
3361 cggacagatg ggtatgttgc tcactggatc aaatgctaaa gggatggact tgggaacaac
3421 tcctggtgat tgtggctgtc cttacatcta taaaaggggc aatgactata tagccattgg
3481 ggtgcacact gcagcagccc gtggtggaaa cactgtcatc tgtgccacac agggaagtga
3541 gggtgaggca actcttgaag gtggagatga caaaggaaca tactgtgggg cgcccattct
3601 aggccctggg gatgcaccaa aattgagcac caaaaccaaa ttttggagat catcgaacac
3661 gccccttcca ccagggacat atgagcctgc ctacctcggt ggccgtgatc cgcgtgttaa
3721 gggtgggcct tccctgcagc aggtaatgag agaccagttg aagccattca ctgaacccag
3781 gggcaaacct ccaagaccag gtgtattgga agcagccaaa caaaccatca tcaatgtcct
3841 cgaacaaacc ctggaccctc cacaaaaatg gacatacgca caggcgtgtg cctcacttga
3901 caaaaccacc tccagcgggc acccccatca cgtccgaaag aatgaattct ggaatggtga
3961 gaccttcact ggtaaactgg cagaccaagc atcaaaagca aacctaatgt ttgaggaagg
4021 gaaacacatg acaccagtgt acacagcagc actcaaggac gagctagtca agactgagaa
4081 agtctatgga aagatcaaga agagactgct ctggggctct gacttgtcca ccatgatccg
4141 gtgtgctagg tcatttggtg ggcttatgga cgagatgaag gcacactgta tatcactccc
4201 agtccgagtt ggcatgaata tgaatgaaga tggcccaata atatttgaga aacattccag
4261 atacaaatat cactatgatg cagactactc tcgttgggat tcaacacaac agagggcagt
4321 actagcagca gccttggaaa tcatggtcag attctctgca gaaccacaat tggcacaaat
4381 agtcgctgag gatctgctgg cccctagtgt agtagatgta ggagacttta aaattacaat
4441 aaatgaaggg ctcccttctg gtgtgccatg cacttctcaa tggaactcca tcacacactg
4501 gctactaact ctttgtgcct tgtctgaagt caccaaactg tcccctgata ttatacaggc
4561 aaattccatg ttctcatttt acggtgatga cgagattgtc agcaccgaca taaaattgga
4621 ccctgaacag ttaaccgcca aattgaagga gtacggccta aaaccaaccc gcccagacaa
4681 aaccgaggga cccctgatta tcagtgaaga tttgaacggc ctcactttcc tccggaggac
4741 ggtgactcgt gacccagctg gctggtttgg aaaactggac caaagctcaa ttttgaggca
4801 gatgtactgg actagaggac caaatcatga agaccccaat gagacaatga taccccattc
4861 tcaaagaccc atacagctca tggcactgct tggtgaagcc tctcttcacg gaccctcttt
4921 ctacagtaaa atcagtaaat tggtcataac tgaactcaaa gaaggtggaa tggactttta
4981 cgtgccaagg caggaaccca tgttcaggtg gatgaggttt tctgacttga gcacgtggga
5041 gggcgatcgc aatctggctc ccaatttcgt gaatgaagat ggcgtcgaat gacgccgctc
5101 catctactga tggtgcagcc ggcctcgtgc cagaaagtaa caatgaggtc atggctcttg
5161 aacccgtggc tggtgccgcc ttggcagccc cggtcaccgg tcaaacaaat attatagacc
5221 cttggattag agcaaatttt gtccaggccc ccaatggtga atttacagtc tccccccgaa
5281 atgcccctgg tgaagtgcta ctgaatctag agttgggtcc agaattgaat ccttatctgg
5341 cacatttagc aagaatgtac aatgggtatg ccggtgggat ggaggtgcag gtcatgttgg
5401 ctgggaacgc gttcacagcc ggcaagttgg tcttcgccgc cgtgccaccc cacttcccga
5461 ttgaaaacct tagcccacag caaatcacca tgttccctca tgtgatcata gatgtgagaa
5521 ccctggaacc tgttttatta ccactccctg atgttaggaa taacttcttc cattataacc
5581 agaaagatga tcccaagatg agaattgtgg ccatgcttta tacccctctc aggtctaatg
5641 gttcaggtga cgatgtgttt acagtctcct gtagagtgtt gactagacct tcccctgact
5701 ttgacttcac atacctggtg ccaccaacag tggagtctaa aacaaagcca ttcaccctcc
5761 caatcctcac acttggggaa ctttccaatt ctaggttccc agtgtccata gaccagatgt
5821 acaccagccc taatgaaatt atatcagtgc agtgtcaaaa tggtaggtgc acactggatg
5881 gggagctcca agggacaaca caactccaag tcagtggcat ttgtgctttt aaaggtgaag
5941 tgaccgccca cttgcatgac aatgatcacc tatataatgt caccatcaca aacttgaatg
6001 ggtccccttt tgatccctcc gaggatatcc ctgcccctct gggtgtgcct gacttccagg
6061 gaagggtttt tggtatcatc tcccaaagag ataaacacaa tagtcctggg cataatgaac
6121 cagcaaacag gggacacgac gctgtggtcc ctacttacac agcacagtac actccaaaac
6181 ttggacaaat tcaaattggc acatggcaaa ctgacgacct tacagtcaac caaccagtca
6241 aattcacccc agttgggctc aatgacactg aacacttcaa ccaatgggtg gtccctaggt
6301 atgctggtgc cctaaacctc aatacaaacc ttgccccttc tgttgctcca gtatttccag
6361 gagagcgcct gctcttcttc agatcataca tttccctcaa gggcggttat ggaaacccag
6421 ccattgattg cctgctacca caagagtggg tgcaacactt ctatcaggaa gcagcccctt
6481 caatgagtga ggtggccctc gtcagataca tcaacccgga cactggtcgg gcactgtttg
6541 aggccaagct ccacagagct ggtttcatga cagtctcgag caacaccagt gccccggtgg
6601 ttgtgcctgc caacgggtac ttcagatttg attcttgggt gaaccaattt tattctctcg
6661 cccccatggg aactgggaat gggcgtagaa gggttcaata atggctggag cttttgtagc
6721 tggtcttgca ggggacgtgc tcagcaatgg gcttagttca ttaatcaatg caggtgctaa
6781 tgcaataaat cagagggcag aatttgattt taatcagaag ttgcagcaaa attcttttaa
6841 tcatgataag gagatgttac aggctcagat tcaggcaact aagcagctgc aggcagacat
6901 gatggctata aaacaagggg tcttgaccgc tggcggcttt tcccctgctg atgcagccag
6961 aggtgctgtg aacgcgccca tgacacaggc gctggattgg aatggcacaa ggtattgggc
7021 accaaactcc atgaggacta catcttattc tggaaaattc acatcaaccg ccccagtgag
7081 gcaggctgac tttcagcaca cccaaagccg gccttcgagt ggctcctctg tgtcttcctt
7141 tgccactcag tcttcaaggc caactctgac cacaaccact ggtccctcac atggcacagc
7201 ctcatcaaat tcaacccgca gcacaagcct ctcccaatca acagtctcca gagctacatc
7261 taggactggt gagtgggtta gagatcaaaa tagaaatttg gaaccctaca tgcatggtgc
7321 cttacagaca gcctttgtca ccccaccttc cagcagggca tctgacggga cagtctcaac
7381 cgtccctaaa ggtgttttgg actcctggac acctgcgttt aacacccgca ggcagccgct
7441 ttttgcacac ctccgtaaga ggggggagtc acaagcttag tgaaaaggtg aaaatttatt
7501 taggatggat tg
//