Typing tool
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Typing tool
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Complete norovirus genomes
| OM372487 | GII.3 | |
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| GII.P12 |
ORF1: 1..5039
ORF2: 5020..6666
ORF3: 6666..7421
LOCUS OM372487 7421 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS598 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372487
VERSION OM372487.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7421)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7421)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7421
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS598"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5039
/gene="ORF1"
CDS <1..5039
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP29364.1"
/translation="KSSSDGVLSSMAVTFKRALGARQKQPPPREIPQRPPRPPTPELV
KKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVRQPDETNTAFSVPPLNQRENRDAKE
PLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLAKVELAPLSLFWRPVYTPQC
LISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLCRRMIQRTTGFFRPYQEWN
RKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKVRPLNILNILASCDWTFAGIV
ESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPVVMGGIGLVLGFTK
EKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRSIEDAVLDL
EAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKSASPDIVGTINALLARIAAA
RSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQRVGLIPRNG
VDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKGKVFDSDAI
IITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWKNAFSSDFS
HIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYELQGPTPTTF
NFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTMSELKQALKNVAIKSCQIVYGG
CTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLRCARIRYYVKCVQEALYSIIQI
AGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGCPKPQDDEEFVVSSDDIKTEGK
KGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDRYYEEVAIA
RATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPDDFKPKGKLWA
DDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQGAQEFFGVA
IKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVVTLLIKRPTGELMPLAARM
GTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDYVVIGVHTA
AARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKFWRSSTAPL
PPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGRPPKPSVLEAAKKTIVNVL
EQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQASKANLMFE
EGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLATMIRCARAFGGLMEELKAHC
VTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWDSTQQRAVLAAALEIMVKFSPE
PHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQWNSIAHWLLTLCALSEVTN
LSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEYGLKPTRPDKTEGPLVISED
LNGLTFLRRTVIRDPAGWFGKLEQSSILRQMYWTRGPNHEDPSETMIPHSQRPIQLMS
LLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLA
PSFVNEDGVE"
mat_peptide <1..929
/gene="ORF1"
/product="p48"
mat_peptide 930..2027
/gene="ORF1"
/product="NTPase"
mat_peptide 2028..2564
/gene="ORF1"
/product="p22"
mat_peptide 2565..2963
/gene="ORF1"
/product="VPg"
mat_peptide 2964..3506
/gene="ORF1"
/product="Pro"
mat_peptide 3507..5036
/gene="ORF1"
/product="RdRp"
gene 5020..6666
/gene="ORF2"
CDS 5020..6666
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29365.1"
/translation="MKMASSDATPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLHLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESGDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPIIVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6666..>7421
/gene="ORF3"
CDS 6666..>7421
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29366.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRSTPSSGSSVRSLSTQVTGLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKSVLDSWTSAFNTRRQPLFAHLRRRGES"
ORIGIN
1 caaaatcttc aagtgacgga gtgctttcta gcatggctgt cacttttaaa cgagccctcg
61 gggcacggca aaaacagcct cccccgaggg aaataccaca aaggcctcca cggccgccca
121 ccccagaact ggtcaaaaag atccctcctc ccccacccaa tggggaggat gaactagtgg
181 tctcttatag cgccaaagat ggcgtttctg gtttgcctga acttaccact gtcaggcaac
241 cggatgagac caacacggca ttcagtgttc cccctctcaa ccagagggag aacagagacg
301 ccaaggaacc gctgaccgga acaatcctgg aaatgtggga cggggagatc tatcattatg
361 gtctgtatgt ggagcgaggc cttgtacttg gtgtgcacaa accaccagct gccatcagcc
421 tcgccaaggt tgaactagca ccactctctc tgttttggag gccagtgtac acaccacagt
481 gtctcatctc tccagacact cttaggagac tgcatggaga gtcgttcccc tacacagcct
541 ttgacaacaa ctgctatgcc ttctgttgtt gggttttgga cctaaacgat tcgtggttgt
601 gcaggagaat gatccagaga acgactggct tcttcagacc ttaccaagaa tggaacagga
661 aacccctccc caccatggat gactctaaat tgaagaaggt agccaacata ttcttgtgtg
721 cgctatcttc gctattcact aggcccatca aagacataat aggaaaggtg agaccgctca
781 acatccttaa catcctggcc tcatgtgatt ggacttttgc aggcatagtg gaatctttga
841 tcctcttggc agagctcttt ggagtattct ggacaccccc agatgtgtct gcgatgatcg
901 cccccttact aggtgactac gaactgcagg ggcctgagga ccttgcagtg gagctcgtac
961 cagtagtgat gggagggatt ggtttggtgt taggattcac caaagagaag atcggaaaaa
1021 tgttgtcatc cgctgcttcc accttaagag cttgtaaaga ccttggtgca tacgggctgg
1081 aaatcctaaa attggtcatg aaatggttct tcccaaagaa agaggaagca aatgagctag
1141 ctatggtgag gtccatcgag gatgcggtgc tggacctcga agcaattgag aacaaccaca
1201 tgactgccct cctcaaagac aaagacagct tggcaaccta tatgaggacc cttgacctcg
1261 aggaggagaa agccaggaag ctttcaacca aatctgcttc acctgacatc gtgggcacaa
1321 ttaacgccct cctggcgaga atcgccgctg cacgttccct ggtgcatcgg gcgaaagagg
1381 aactctccag cagaccaaga cctgttgttg ttatgatatc aggtaggcca gggataggga
1441 aaactcacct tgccagggag ctggccaaga agattgcagc ttcactcaca ggggaccagc
1501 gcgtgggtct catccctcgc aatggcgttg accactggga tgcatataag ggagaaagag
1561 tcgtcctatg ggacgattat ggaatgagca atcccatcca cgacgcactc aggttacagg
1621 aacttgctga cacctgtccc cttacactaa actgtgacag gattgagaac aaaggaaagg
1681 tctttgatag tgatgccata atcatcacca ctaatctagc caacccagca ccactggact
1741 atgtcaactt tgaagcatgc tcgaggcgca ttgacttcct cgtgtacgca gaagcccctg
1801 aggtcgagaa agcaaagcgt gatttcccag gtcaacctga catgtggaag aacgcattta
1861 gctctgactt ctcgcacata aaactggcgc tggctccgca gggtggtttc gacaagaacg
1921 gaaacacccc acacgggaaa ggcgtcatga aaaccctcac tactggttcc ctcatcgccc
1981 gagcatcagg gctactccat gagaggttgg atgagtacga gctgcagggc ccaactccca
2041 ccacctttaa ttttgaccgc aacaaggtgc ttgcgttcag acaacttgct gccgaaaaca
2101 agtatggatt gttggacaca atgagagttg gaaaacagct caaggatgtt aagaccatgt
2161 cagagctcaa acaggcactc aagaatgtcg caatcaagag ttgtcagata gtgtatggtg
2221 gctgcaccta caggcttgag tctgatggca agggtgatgt aaaagttgac agagtccaga
2281 acgtcactgt acagaccaac aatgagcttg ccggcgcatt acaccatctt aggtgcgcca
2341 gaatcagata ttatgtcaag tgtgttcagg aggccctgta ttccatcatc caaatcgctg
2401 gggctgcatt tgttaccaca cgcattgtca agcgcatgaa catacaagat ctctggtcaa
2461 agccacaggt ggaggataca gaggaaatcg ctagtaagga tgggtgccca aaaccccagg
2521 atgatgaaga gtttgttgtc tcatccgatg acatcaaaac cgagggcaag aaagggaaga
2581 acaagtctgg ccgtggcaag aagcacacag cattttcaag taaaggtctc agtgatgaag
2641 agtacgatga gtacaagaga attagagaag aaagaaatgg caaatactcc atagaggaat
2701 acctccagga cagagacaga tattatgagg aggtggccat cgccagggca accgaagagg
2761 acttctgtga agaagaagag gccaagatcc gacagaggat cttcaggcca acaaggaaac
2821 aacgcaaaga ggagagagcc tctctcggtt tggtcacagg ttctgaaatt aggaagagga
2881 acccagacga cttcaagcct aaaggaaagc tgtgggctga tgatgacagg agtgttgact
2941 acaatgagaa gctcaacttt gaagccccac caagcatctg gtcgaggata gtcaactttg
3001 gctcaggctg gggcttttgg gtttccccca gcctgttcat aacatcaact catgtcatac
3061 cccagggcgc acaggagttc tttggtgtag ccatcaaaca aatccagata cataaatcag
3121 gtgaattctg ccgcttgagg tttccaaagc cgatcagaac tgatgtgaca ggcatgatct
3181 tagaagaagg tgcacccgaa ggaaccgtgg tcacattact catcaaaaga ccaactggag
3241 agctcatgcc cctggcagcc agaatgggaa cccacgcaac catgaagata caagggcgca
3301 ctgttggagg tcaaatgggc atgctcctaa caggatccaa cgccaagagt atggacctgg
3361 gcaccacacc aggtgactgt ggctgcccct acatttacaa gagggggaat gactacgtgg
3421 tcattggggt ccatacagct gccgcccgtg gaggaaacac cgtcatttgt gccacccaag
3481 ggagcgaggg agaagccaca cttgaaggcg gtgatagcaa ggggacctac tgcggggcac
3541 caatcttagg tccaggaagt gccccaaaac tcagcaccaa gaccaagttc tggagatcat
3601 ccacggcacc actcccacct ggtacctatg aaccagctta ccttggtggc aaggacccca
3661 gagttaaggg tggcccttca ctgcagcaag ttatgaggga tcaactgaaa ccattcactg
3721 agcctagggg taggccacca aaaccaagtg tgctagaagc tgccaagaaa accatcgtca
3781 atgtcctaga acagacaatt gacccacctc aaaaatggtc gtttgcgcag gcatgcgcat
3841 ccctagacaa gaccacttct agcggccatc cgcaccacat gcggaagaat gactgctgga
3901 acggggagtc cttcacagga aaattggcag accaggcttc caaggccaac ctgatgtttg
3961 aggagggaaa gaacatgacc ccagtttaca cgggtgcgct taaggacgag ctggtcaaga
4021 ctgacaagat ttatggtaag atcaaaaaga ggcttctctg gggttcggac ctggcgacca
4081 tgattcggtg cgctcgagca ttcgggggtc tgatggagga actcaaagca cattgtgtca
4141 cgctacctgt tagggtgggt atgaacatga atgaggatgg ccctatcatc tttgagagac
4201 actccagata taaatatcat tatgatgctg actactctcg gtgggattca acacaacaaa
4261 gagccgtgtt ggcagcagcc ttagaaatca tggtcaagtt ttccccagag ccacacctgg
4321 cccaaaaggt tgcagaagac cttctttctc ccagcgtgat ggacgtgggt gatttcaaaa
4381 tatcaatcaa tgagggtctc ccctccggag tgccctgcac ctcccaatgg aattccatcg
4441 cccactggct cctcactctc tgtgcacttt ctgaggttac aaacctgtcc cctgacatta
4501 ttcaggctaa ctctctcttt tctttctatg gtgatgatga aattgtaagt acagatataa
4561 aattggaccc agaaaaactg acagcaaaac tcaaggaata cgggttgaaa ccgacccgcc
4621 ctgacaaaac tgaagggcct cttgtcattt ccgaagacct aaatggccta accttcctgc
4681 ggaggaccgt gattcgcgac ccagcaggct ggtttggaaa gttggaacag agctcaatac
4741 tcagacaaat gtactggact aggggcccca accatgaaga tccatctgaa acaatgatac
4801 cacactccca gaggcccata caattgatgt ctttgctggg cgaggcagca ctccacggcc
4861 cagcattcta cagcaaaatc agtaaattgg tcattgcaga gttgaaggag ggtggtatgg
4921 atttttacgt gccaagacaa gaaccaatgt tcagatggat gagattctcg gatctgagca
4981 cgtgggaggg cgatcgcaat ctggctccca gttttgtgaa tgaagatggc gtcgagtgac
5041 gccaccccat ctaatgatgg tgccgccggc ctcgtcccag agatcaacaa tgaggcaatg
5101 gcgctagatc cagtggcggg tgcagcgata gcagcacccc tcactggcca gcaaaatata
5161 attgatccct ggattatgaa taattttgtg caagcacctg gtggtgagtt cacagtgtct
5221 cctaggaatt cccctggtga agtgctcctc aatttggaat tgggcccaga gataaacccc
5281 tatctggccc atcttgctag aatgtataat ggttatgcag gtgggtttga agtgcaggta
5341 gtcctggctg gaaatgcgtt tacagcagga aagataatct ttgcagctat accccctaac
5401 ttcccaattg acaatctaag tgcagcacag atcacaatgt gcccacatgt gattgtggat
5461 gtcaggcagc tggaaccagt caacctcccg atgcctgacg ttcgcaataa cttcttccat
5521 tacaatcaag ggtctgattc gagattgcac ttggttgcaa tgctgtatac acctcttagg
5581 gcaaataact ctggggatga tgttttcact gtgtcttgta gagtgctgac tagacccagt
5641 cctgaatttt catttaactt ccttgtgcca cccactgtgg agtcaaagac aaaacctttc
5701 accctcccaa ttctgactat ttctgaaatg tctaattcta ggtttccagt gccgattgat
5761 tctctgcaca ccagcccaac tgagaatatt gttgtccagt gtcaaaatgg acgcgtcact
5821 cttgatggtg agttgatggg caccactcag ctcctaccta gtcaaatctg tgctttcagg
5881 ggcgtgctca ctagatcaac aagcagggct agtgaccagg ccgacacagc aacccctaga
5941 ctgttcaatt attattggca catacaattg gataatctaa atgggactcc ttatgatcct
6001 gcagaagaca taccaggccc cctagggaca ccagattttc ggggtaaagt ctttggcgtg
6061 gccagccaaa gaaaccctga cagtacaact agagcacatg aagcaaaggt ggacacaaca
6121 gctggtcgct tcaccccaaa actaggctca ttagagatat ccactgaatc tggtgacttt
6181 gaccaaaacc aaccaacaag attcactcca gttggcattg gggttgacca tgagtcagac
6241 ttccagcaat ggtccttacc cgactactct ggtcagttca ctcacaacat gaacttagcc
6301 ccagctgttg ctcccaattt ccctggtgag cagctccttt tcttccgctc acagttacca
6361 tcttctggtg ggcgatccaa tgggattcta gattgcctgg tcccccaaga atgggttcag
6421 cacttctacc aagaatcagc ccccgcccaa acccaggtgg ctctggttag atatgtcaat
6481 cctgacactg gtagagtgtt gtttgaggcc aagctgcaca aattaggttt catgactata
6541 gctaagaatg gtgactctcc aataattgtc cccccaaatg gatactttag gtttgaatct
6601 tgggtgaacc cattttacac actcgccccc atgggaactg ggaatgggcg tagaagagta
6661 caataatggc tggtgctttt atagcaggat tagctggtga tatattcaca aatactgtag
6721 ggtctttagt taatgcaggg gctaatgcta ttaatcaaaa agttgatttt gaaaataata
6781 aatatttgca aaatgcttcc ttcaaccatg ataaggaaat gttgaatgca cagattgagg
6841 caaccaagag attacaggct gatatgattg ctatcaaaca gggggttttg accgctggcg
6901 gcttttcccc cactgatgca gctcgtgggg caatcaacgc ccccatgaca aaagtcctag
6961 attggaatgg aacaaggtac tgggcaccaa gtgccacctc tacaacctcg atgtcgggtg
7021 gcttcacaaa ccaggctgtg cacagaacca cgccaaattt taaaatgaac caggccccca
7081 gatccacacc cagcagtggg tcttcagtga ggtcactctc aacccaagtc actggtctga
7141 gctcacactc gtccgggtcg tctcgatcca gcgggtctac agttgctagc tcattaccat
7201 cctctaatag gactagggac tgggtcaatc agcaaaattt caatttggaa ccacacatgc
7261 ctgggtcact taggacagct tttgtcactc caccatccag tacagcctct agttcaggca
7321 ctgtctcaac cgtgcccaaa agtgttttgg actcctggac atctgcgttt aacacgcgca
7381 gacagccgct attcgcacac cttcgtagaa ggggggagtc a
//