Typing tool
|
|
|
|
|
|
Typing tool
|
Complete norovirus genomes
| OM372486 | GII.3 | |
|
|---|---|---|---|
| GII.P12 |
ORF1: 1..4928
ORF2: 4909..6555
ORF3: 6555..7310
LOCUS OM372486 7310 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS567 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372486
VERSION OM372486.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norwalk virus.
REFERENCE 1 (bases 1 to 7310)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7310)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7310
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS567"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/country="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..4928
/gene="ORF1"
CDS <1..4928
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP29361.1"
/translation="PPTPELVKKIPPPPPNGEDELVVSYSAKDGVSGLPELTTVWQPD
ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
LAKVELAPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
WLCRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
VRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
AKRDFPGQPDMWKNAFSSDFSHIKLALAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLLDTMRVGKQLKDVKTM
SELKQALKNVAIKSCQIVYGGCTYRLESDGKGDVKVDRVQNVTVQTNNELAGALHHLR
CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEEIASKDGC
PKPQDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
KYSIEEYLQDRDRYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
RGRPPKPSVLEAAKKTIVNVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
ATMIRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
mat_peptide <1..818
/gene="ORF1"
/product="p48"
mat_peptide 819..1916
/gene="ORF1"
/product="NTPase"
mat_peptide 1917..2453
/gene="ORF1"
/product="p22"
mat_peptide 2454..2852
/gene="ORF1"
/product="VPg"
mat_peptide 2853..3395
/gene="ORF1"
/product="Pro"
mat_peptide 3396..4925
/gene="ORF1"
/product="RdRp"
gene 4909..6555
/gene="ORF2"
CDS 4909..6555
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29362.1"
/translation="MKMASSDAAPSNDGAAGLVPEINNEAMALDPVAGAAIAAPLTGQ
QNIIDPWIMNNFVQAPGGEFTVSPRNSPGEVLLNLELGPEINPYLAHLARMYNGYAGG
FEVQVVLAGNAFTAGKIIFAAIPPNFPIDNLSAAQITMCPHVIVDVRQLEPVNLPMPD
VRNNFFHYNQGSDSRLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPEFSFNFLVPP
TVESKTKPFTLPILTISEMSNSRFPVPIDSLHTSPTENIVVQCQNGRVTLDGELMGTT
QLLPSQICAFRGVLTRSTSRASDQADTATPRLFNYYWHIQLDNLNGTPYDPAEDIPGP
LGTPDFRGKVFGVASQRNPDSTTRAHEAKVDTTAGRFTPKLGSLEISTESSDFDQNQP
TRFTPVGIGVDHESDFQQWSLPDYSGQFTHNMNLAPAVAPNFPGEQLLFFRSQLPSSG
GRSNGILDCLVPQEWVQHFYQESAPAQTQVALVRYVNPDTGRVLFEAKLHKLGFMTIA
KNGDSPITVPPNGYFRFESWVNPFYTLAPMGTGNGRRRVQ"
gene 6555..>7310
/gene="ORF3"
CDS 6555..>7310
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29363.1"
/translation="MAGAFIAGLAGDIFTNTVGSLVNAGANAINQKVDFENNKYLQNA
SFNHDKEMLNAQIEATKRLQADMIAIKQGVLTAGGFSPTDAARGAINAPMTKVLDWNG
TRYWAPSATSTTSMSGGFTNQAVHRTTPNFKMNQAPRAAPSSGSSVRSLSTQVTSLSS
HSSGSSRSSGSTVASSLPSSNRTRDWVNQQNFNLEPHMPGSLRTAFVTPPSSTASSSG
TVSTVPKNVLDSWTSAFNTRRQPLFAHLRRRGES"
ORIGIN
1 ggccgcccac cccagaactg gtcaaaaaga tccctcctcc cccacccaat ggggaggatg
61 aactagtggt ctcttatagc gccaaagatg gcgtttctgg tttgcctgaa cttaccactg
121 tctggcaacc ggatgagacc aacacggcat tcagtgttcc ccctctcaac cagagggaga
181 acagggacgc caaggagccg ctgaccggaa caatcctaga aatgtgggac ggggagatct
241 atcattatgg tctgtatgtg gagcgaggcc ttgtacttgg tgtgcacaaa ccaccagctg
301 ccatcagcct cgccaaggtt gaactagcac cactctctct gttttggagg ccagtgtaca
361 caccacagta tctcatctct ccagacactc ttaggagact gcatggagag tcgttcccct
421 acacagcctt tgacaacaac tgctatgcct tctgttgttg ggttttggac ctaaacgact
481 cgtggttgtg caggagaatg atccagagaa caactggctt cttcagacct taccaagaat
541 ggaacaggaa acccctcccc accatggatg actctaaatt gaagaaggta gccaacatat
601 tcttgtgtgc gctatcttcg ctattcacta ggcccattaa agacataata ggaaaggtga
661 gaccgcttaa catccttaac atcctggcct catgtgattg gacttttgca ggcatagtgg
721 aatctttgat cctcttggca gagctctttg gagttttctg gacaccccca gatgtgtctg
781 cgatgatcgc ccccttacta ggtgactacg aactgcaggg gcctgaggac cttgcagtgg
841 agctcgtacc agtagtaatg ggagggattg gtttggtgtt aggattcacc aaagagaaga
901 tcggaaaaat gttgtcatcc gctgcttcca ccttaagagc ttgtaaagac cttggtgcat
961 acgggctgga aatcctaaaa ttggttatga aatggttctt cccaaagaaa gaggaagcga
1021 atgagctagc tatggtgagg tccatcgagg atgcggtgct ggatctcgaa gcaattgaga
1081 acaaccacat gactgccctc ctcaaagaca aagacagctt ggcaacctat atgaggaccc
1141 ttgacctcga ggaggagaaa gccaggaagc tttcaaccaa atctgcttca cctgacatcg
1201 tgggcacaat taacgccctc ctggcgagaa tcgccgctgc acgttccctg gtgcatcggg
1261 cgaaagagga actctccagc agaccaagac ctgttgttgt tatgatatca ggtaggccag
1321 ggatagggaa aactcacctt gccagggagc tggccaagaa gattgcagct tcactcacag
1381 gggaccagcg cgtgggtctc atccctcgca atggcgttga ccactgggac gcatataagg
1441 gagaaagagt cgtcctgtgg gacgattatg gaatgagcaa tcccatccac gacgccctca
1501 ggttacagga acttgctgac acctgtcccc ttacgctaaa ctgtgacagg attgagaaca
1561 aaggaaaggt ctttgatagt gatgccataa tcatcaccac taatctagcc aacccagcac
1621 cattggacta tgtcaacttt gaagcatgct cgaggcgcat tgacttcctc gtgtacgcag
1681 aagcccctga ggtcgagaaa gcaaagcgtg atttcccagg tcaacctgac atgtggaaga
1741 acgcatttag ctctgacttc tcgcacataa aactggcgct ggctccgcag ggtggtttcg
1801 acaagaacgg gaacacccca cacgggaaag gcgtcatgaa aaccctcacc actggttccc
1861 tcatcgcccg agcatcaggg ctactccatg agaggttgga tgagtacgag ctgcagggcc
1921 caactcccac caccttcaat tttgaccgca acaaggtgct tgcgttcaga caacttgccg
1981 ccgaaaacaa gtatggattg ttggacacaa tgagagttgg aaaacagctc aaggatgtta
2041 agaccatgtc agagctcaaa caggcactca agaatgtcgc aatcaagagt tgtcagatag
2101 tgtatggtgg ctgcacctac aggcttgagt ctgatggcaa gggtgatgta aaagttgaca
2161 gagttcagaa cgtcactgta cagaccaaca atgagcttgc cggcgcatta caccatctta
2221 ggtgcgccag aatcagatat tatgtcaagt gtgttcagga ggccctgtat tccatcatcc
2281 aaatcgctgg ggccgcattt gttaccacac gcattgtcaa gcgcatgaac atacaagatc
2341 tctggtccaa gccacaggtg gaggacacag aggaaatcgc tagcaaggat gggtgcccaa
2401 aaccccagga tgatgaagag tttgttgtct catccgatga catcaaaacc gagggcaaga
2461 aagggaagaa caaatctggc cgtggcaaga agcacacagc attttcaagt aaaggtctca
2521 gtgatgaaga gtacgatgag tacaaaagaa ttagagaaga aagaaatggc aaatactcca
2581 tagaggaata cctccaggac agagacaggt attatgagga ggtggccatc gccagggcaa
2641 ccgaagagga cttctgtgaa gaagaagagg ccaagatccg acagaggatc ttcaggccaa
2701 caaggaaaca acgcaaagag gagagagcct ctctcggttt ggtcacaggt tctgaaatta
2761 ggaagaggaa cccagacgac ttcaagccta aaggaaagct gtgggctgat gatgacagga
2821 gtgttgacta caatgagaag ctcaactttg aagccccacc aagcatctgg tcgaggatag
2881 tcaactttgg ctcaggctgg ggcttttggg tttcccccag cctgttcata acatcaactc
2941 atgtcatacc ccagggcgca caggagttct ttggtgtacc catcaaacaa atccagatac
3001 ataaatcagg tgaattctgc cgcttgaggt ttccaaagcc gatcagaact gatgtgacag
3061 gcatgatctt agaagaaggt gcacccgaag gaaccgtggt cacattactc atcaaaagac
3121 caactggaga gctcatgccc ctggcagcca gaatgggaac ccacgcaacc atgaagatac
3181 aagggcgcac tgttggaggt caaatgggca tgctcctaac aggatccaac gccaagagta
3241 tggacctggg caccacacca ggtgactgtg gctgccccta catttacaag agggggaatg
3301 actacgtggt cattggggtc catacagcag ccgcccgtgg aggaaacact gtcatttgtg
3361 ccacccaggg gagcgaggga gaagccacac ttgaaggcgg tgatagcaag gggacctact
3421 gcggagcacc aatcttaggt ccaggaagtg ccccaaaact cagcaccaag accaagttct
3481 ggagatcatc cacggcacca ctcccacctg gcacctatga accagcttac cttggtggca
3541 aggaccccag agttaagggt ggcccttcac tgcaacaagt tatgagggat caactgaaac
3601 cattcactga gcctaggggt aggccaccaa aaccaagtgt gctagaagct gccaagaaaa
3661 ccatcgtcaa tgtcctagaa cagacaattg acccacctca aaaatggtcg tttgcgcagg
3721 catgcgcatc cctagacaag accacttcta gcggccatcc gcaccacatg cggaagaatg
3781 actgctggaa cggggagtcc ttcacaggaa aattggcaga ccaggcttcc aaggccaacc
3841 tgatgtttga ggagggaaag aacatgacac cagtttacac gggtgcgctt aaggacgagc
3901 tggtcaagac tgacaagatt tatggtaaga tcaaaaagag gcttctctgg ggttcggacc
3961 tggcgaccat gattcggtgc gctcgagcat tcgggggtct gatggaggaa ctcaaagcac
4021 attgtgtcac actacctgtt agggtgggta tgaatatgaa tgaggatggc cctatcatct
4081 ttgagagaca ctccagatat aaatatcatt atgatgctga ctactcccgg tgggattcaa
4141 cacaacaaag agccgtgttg gcagcagcct tggaaatcat ggtcaagttt tccccagagc
4201 cacacctggc ccaaaaggtt gcagaagacc ttctttctcc cagcgtgatg gacgtgggtg
4261 atttcaaaat atcaatcaat gagggtctcc cctccggagt gccctgcacc tcccaatgga
4321 attccatcgc ccactggctc ctcactctct gtgcactctc tgaggttaca aacctgtccc
4381 ctgacattat tcaggccaac tccctctttt ctttctacgg tgatgatgaa attgtgagta
4441 cagatataaa attggaccca gaaaaactga cagcaaaact caaggaatac gggttgaaac
4501 cgacccgccc tgacaaaact gaagggcctc ttgtcatttc cgaagacctg aatggcctaa
4561 ccttcctgcg gaggaccgtg actcgcgacc cagcaggctg gtttggaaag ttggaacaga
4621 gctcaatact cagacaaatg tactggacta ggggccccaa ccatgaagat ccatctgaaa
4681 caatgatacc acactcccag aggcccatac aattgatgtc tttgctgggc gaggcagcac
4741 tccacggccc agcattctac agcaaaatca gcaaattggt cattgcagag ttgaaggagg
4801 gtggcatgga tttttacgtg ccaagacaag aaccaatgtt cagatggatg agattctcgg
4861 atctgagcac gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg
4921 tcgagtgacg ccgccccatc taatgatggt gccgccggcc tcgtcccaga gatcaacaat
4981 gaggcaatgg cgctagatcc agtggcgggt gcagcgatag cagcacccct caccggccag
5041 caaaatataa ttgatccctg gattatgaat aattttgtgc aagcacctgg tggtgagttc
5101 acagtgtctc ctaggaattc ccctggtgaa gtgctcctca atttggaatt gggcccagag
5161 ataaacccct atctggccca tcttgctaga atgtacaatg gttatgcagg tgggtttgaa
5221 gtgcaggtag tcctggctgg aaatgcgttt acagcaggaa agataatctt tgcagctata
5281 ccccctaact tcccaattga caatctaagt gcagcacaga tcacaatgtg cccacatgtg
5341 attgtggatg tcaggcagct ggaaccagtc aacctcccga tgcctgacgt tcgcaataac
5401 ttcttccact acaaccaagg gtctgattcg agattgcgct tggttgcaat gctgtataca
5461 cctcttaggg caaataactc tggggatgat gttttcactg tgtcttgtag agtgctaact
5521 agacctagtc ctgaattttc atttaacttc cttgtgccac ccactgtgga gtcaaagaca
5581 aaacccttta ccctcccaat tctgactatt tctgaaatgt ctaattctag gtttccagtg
5641 ccgattgatt ctctgcacac cagcccaact gagaatattg ttgtccagtg tcaaaatgga
5701 cgcgtcactc ttgatggtga gttgatgggc accactcagc tcctacctag tcaaatctgt
5761 gctttcaggg gcgtgctcac tagatcaaca agcagagcta gtgaccaggc cgacacagca
5821 acccctagat tgttcaatta ttattggcac atacaattgg ataatctaaa tgggactcct
5881 tatgatcctg cagaagacat accaggcccc ctagggacac cagattttcg gggtaaagtc
5941 tttggcgtgg ccagccaaag aaaccccgac agtacaacta gagcacatga agcaaaggtg
6001 gacacaacag ctggtcgctt caccccaaaa ctaggctcat tagagatatc cactgaatct
6061 agtgactttg accaaaacca accaacaaga ttcaccccag ttggcattgg ggttgaccat
6121 gagtcagatt tccagcaatg gtccttaccc gactactctg gtcagttcac ccacaacatg
6181 aacttagccc cagctgttgc ccccaatttc cctggtgagc agctcctttt cttccgctca
6241 cagttaccat cttctggtgg gcgatccaat gggattctag attgcctggt cccccaagaa
6301 tgggtccagc acttctacca agaatcagcc cccgcccaaa cccaggtggc tctggttaga
6361 tatgttaacc ctgacactgg tagagtgctg tttgaggcca agctgcacaa attaggtttc
6421 atgactatag ctaagaatgg tgattctcca ataactgtcc ccccaaatgg atactttagg
6481 tttgaatctt gggtgaaccc attttataca ctcgccccca tgggaactgg gaatgggcgt
6541 agaagggttc aataatggct ggtgctttta tagcaggatt agctggtgac atatttacaa
6601 atactgtagg gtctttggtt aatgcagggg ctaatgctat taatcaaaaa gttgactttg
6661 aaaataataa atatttgcaa aatgcttcct tcaaccatga taaggaaatg ttgaatgcac
6721 agattgaggc aacaaagaga ttacaggctg atatgattgc tatcaaacag ggggttttga
6781 ccgcaggcgg cttttccccc actgatgcag ctcgtggggc aatcaacgcc cccatgacaa
6841 aagtcctaga ttggaatgga acaaggtact gggcaccaag tgccacctct acgacctcga
6901 tgtcgggtgg cttcacaaac caggctgtgc acagaaccac gccaaatttt aaaatgaacc
6961 aggcccccag agccgcaccc agcagtgggt cttcagtgag gtcactctca acccaagtca
7021 ctagtctgag ctcacactcg tccgggtcgt ctcggtccag cgggtctaca gttgctagct
7081 cattaccatc ctctaatagg actagggact gggtcaatca gcaaaatttc aatttggaac
7141 cacacatgcc tgggtcactt aggacagctt ttgtcactcc accatctagt acagcctcta
7201 gttcaggcac tgtctcaacc gtgcccaaaa atgttttgga ctcctggaca tctgcgttta
7261 acacgcgcag acagccgcta ttcgcacacc ttcgtagaag gggggagtca
//