Typing tool
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Typing tool
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Complete norovirus genomes
| OM372485 | GII.4 Sydney | |
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| GII.P31 |
ORF1: 1..5063
ORF2: 5044..6666
ORF3: 6666..7435
LOCUS OM372485 7435 bp RNA linear VRL 30-JAN-2022
DEFINITION Norovirus GII isolate FS560 nonstructural polyprotein (ORF1) gene,
partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene,
partial cds.
ACCESSION OM372485
VERSION OM372485.1
KEYWORDS .
SOURCE Norovirus GII
ORGANISM Norovirus GII
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
Picornavirales; Caliciviridae; Norovirus; Norovirus norwalkense.
REFERENCE 1 (bases 1 to 7435)
AUTHORS Wang,J.
TITLE Epidemiological characteristics of Human Caliciviruse infection in
in Children presenting with Acute Gastroenteritis (AGE) in Beijing,
China
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 7435)
AUTHORS Wang,J.
TITLE Direct Submission
JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for
food safety risk assessment, Panjiayuan Nanli No. 7, Beijing,
Beijing 100021, China
COMMENT ##Assembly-Data-START##
Assembly Method :: ABySS v. 2.1.0
Sequencing Technology :: Illumina
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..7435
/organism="Norovirus GII"
/mol_type="genomic RNA"
/isolate="FS560"
/isolation_source="feces"
/host="Homo sapiens"
/db_xref="taxon:122929"
/geo_loc_name="China"
/collection_date="Feb-2019"
/note="genotype: GII"
gene <1..5063
/gene="ORF1"
CDS <1..5063
/gene="ORF1"
/codon_start=3
/product="nonstructural polyprotein"
/protein_id="UJP29358.1"
/translation="ANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPP
RPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLNQ
RESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFW
RPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF
FRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATC
DWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGI
GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRS
IEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTINS
LLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQR
VGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG
KVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK
NAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYEL
QGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIK
KCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGTLHHLRCARIRYYVKCVQE
ALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSS
DDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDR
YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDF
KPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG
AKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGE
LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY
VVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKF
WRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAA
KKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA
SKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGL
MDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALE
IMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTL
CALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTE
GPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHS
QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST
WEGDRNLAPSFVNEDGVE"
mat_peptide <1..953
/gene="ORF1"
/product="p48"
mat_peptide 954..2051
/gene="ORF1"
/product="NTPase"
mat_peptide 2052..2588
/gene="ORF1"
/product="p22"
mat_peptide 2589..2987
/gene="ORF1"
/product="VPg"
mat_peptide 2988..3530
/gene="ORF1"
/product="Pro"
mat_peptide 3531..5060
/gene="ORF1"
/product="RdRp"
gene 5044..6666
/gene="ORF2"
CDS 5044..6666
/gene="ORF2"
/note="major capsid protein"
/codon_start=1
/product="VP1"
/protein_id="UJP29359.1"
/translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ
QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD
VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML
TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG
GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD
CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL"
gene 6666..>7435
/gene="ORF3"
CDS 6666..>7435
/gene="ORF3"
/note="minor structural protein; small basic protein"
/codon_start=1
/product="VP2"
/protein_id="UJP29360.1"
/translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN
APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS
NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI
SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPL"
ORIGIN
1 ttgccaacag caacaacgac atcgcaaaat cttcaagtga cggtgtgttt tctaacatgg
61 ctgtcacttt taagcgggcc ctcggggcgc ggcctaaaca gccgcccccg aaggaaatac
121 cacccagacc cccgcgacca cccacaccag aattggtcaa aaagatccct cctcccccac
181 ccaacgggga ggatgaacta gtggtctctt acaacgccaa agatggcgtt tccggactgc
241 ctgagctcac cactgtcaga caaccggaag aaaccaacac ggcgttcagt gtccccccac
301 tcaaccaaag ggagagcagg gacgccaagg agccactaac tgggacaatc attgaaatgt
361 gggatggaga aatctaccat tacggcctgt acgtggaacg aggtcttata cttggtgtgc
421 acaagccacc agcagccatc agcctcgcta aggtcgagct ggcaccactc tctttgttct
481 ggagacctgt atacaccccc cagtacctta tctctccaga cactcttagg agattacatg
541 gagagtcatt cccctacact gcatttgaca acaattgcta cgccttttgt tgttgggtat
601 tagacctaaa cgactcatgg ctaagcagga gaatgattca gagaacaaca ggcttcttta
661 ggccgtacca ggattggaac aggaaacccc tccccactat ggatgattcc aaattaaaga
721 aggtagccaa catatttttg tgcactttgt cttcactatt caccaggccc atcaaggaca
781 taatagggaa gttgaaacct ctcaacatcc ttaatattct ggctacatgt gattggacct
841 tcgcaggcgt agtggaatcc ttaatactct tggcagaact ctttggagtt ttctggacac
901 ccccagatgt gtctgcgatg atcgccccct tgctaggtga ttatgaactg caaggacccg
961 aggaccttgc agtggaactg gtcccaatag tgatgggagg gataggtttg gttctaggat
1021 ttaccaaaga gaagatcgga aagatgctgt catcagctgc atccacttta agagcttgta
1081 aagaccttgg tgcatacgga ctggaaatct taaaattggt catgaagtgg ttcttcccaa
1141 agaaagagga agcaaatgaa ctggctatgg tgagatccat cgaggatgca gtactagacc
1201 tcgaggcaat tgaaaacaac cacatgacca ccctgctcaa agacaaagac agcttgacaa
1261 cctacatgag aacccttgac cttgaggagg agaaagccag aaaactctca accaaatctg
1321 cttcacccga tattgtgggc acaatcaact ctcttctggc aagaatcgct gctgcacgct
1381 ccctagtgca tcgggcgaaa gaagagctct ccagcaggcc gagacctgtc gttgtaatga
1441 tatcgggaag accagggata gggaaaactc accttgccag ggagctggcc aagaagatcg
1501 cggcctccct cacaggggac cagcgtgtgg gccttatccc acgcaatggt gtcgaccact
1561 gggacgcata taagggcgaa agggttgtcc tatgggacga ctatggaatg agcaacccca
1621 tccatgatgc ccttaggttg caggagcttg ctgacacttg ccccctcacg ctaaattgtg
1681 acagaattga gaacaaagga aaagtctttg acagtgacgc cataattatc accaccaacc
1741 tggccaaccc agcaccactg gattatgtca actttgaagc gtgctcgaga cgcattgatt
1801 tcctcgtgta cgcagaagcc cctgaggtgg agaaggcaaa gcgcgacttc ccaggtcaac
1861 ctgacatgtg gaagaacgct ttcagtcctg acttctcaca cataaaactg tcattggctc
1921 cacagggtgg ttttgacaag aacggcaaca ccccgcatgg aaaaggggtc atgaagaccc
1981 tcaccactgg ctccctcatc gcccgagcat cagggttact ccatgagagg ctagatgaat
2041 atgaattgca aggcccagcc ctcaccactt tcaactttga ccgcaacaag atacttgctt
2101 ttagacagct cgctgctgaa aacaagtatg ggctgatgga cacaatgaga gttggaaaac
2161 agctcaagga tgtcaagact atgtcagacc tcaaacaggc actcaagaac atcgcgatca
2221 agaagtgcca gatagtgtac aatggtggca cctatacact tgaggctgat ggcaagggca
2281 gtgtgaaagt tgacaaagtg caaagtgcca ctgtgcagac caacaatgaa ctagccggta
2341 ccctacacca cctaagatgc gctagaatca gatactatgt taagtgcgtc caggaggcac
2401 tgtattccat catccaaatc gctggggctg cattcgtcac cacgcgcatc gctaagcgca
2461 tgaatataca gaatctctgg tccaagccac aggtggaaga cacagaagag atggccaaca
2521 aagacggttg cctaaaaccc aaagatgatg aagagtttgt cgtttcatcc gacgacatca
2581 aaactgaggg caagaaaggg aagaacaagt ccggccgcgg caagaagcac acagcctttt
2641 caagtaaagg gctcagtgat gaggagtatg atgagtacaa gagaatcaga gaagaaagga
2701 atggtaagta ctccatagaa gagtaccttc aggacagaga caggtactac gaggaggtgg
2761 ccattgccag ggcaaccgaa gaggacttct gtgaggagga ggaggccaaa atccggcaga
2821 ggattttcag accaacaagg aaacaacgca aagaagagag ggcttctctc ggcttggtca
2881 caggctctga aatcaggaag agaaacccag aagacttcaa acctaaggga aagctgtggg
2941 ctgatgacga cagaagtgtt gactacaatg agaaactcaa ctttgaggcc ccaccaagca
3001 tctggtcgcg gatagtcaac tttggttcag gctggggctt ctgggtctcc cccagtctgt
3061 ttataacatc aacccatgtc ataccccaag gtgcaaagga gttcttcgga gtccctatca
3121 agcaaatcca gatacacaag tcaggtgaat tctgccgatt gagattccca aagccaatca
3181 gaaccgatgt gacgggcatg attctagaag aaggtgcgcc cgaggggacc gtggccacac
3241 tgctcatcaa gagaccaact ggagagctca tgcctctggc agccagaatg gggacccatg
3301 caaccatgaa aattcagggg cgcacagttg gagggcaaat gggtatgctc ctgacaggat
3361 ccaacgccaa gagtatggac ctaggcacaa caccaggcga ctgcggctgc ccctacatct
3421 acaagagggg gaatgactac gtggtcatag gggtccatac ggctgctgcc cgtggaggaa
3481 acactgtcat atgtgccacc cagggaagtg agggagaggc cacacttgaa ggaggtgaca
3541 gtaaagggac atactgtggc gcaccaatct tgggcccagg gagcgctccg aagctcagca
3601 ccaagaccaa gttttggaga tcatccacaa caccactccc acctggcacc tacgaaccag
3661 cctacctcgg tggcaaagac cctagagtca aaggtggccc ttcattgcaa caagttatga
3721 gggaccagct gaagccattc acagaaccca gaggcaaacc accaagacca aatgtgttgg
3781 aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca ccccaaaaat
3841 ggtcatttgc gcaagcttgc gcatcccttg acaaaaccac ctccagcggc cacccgcacc
3901 acatgcggaa aaacgactgt tggaatgggg agtccttcac aggaaagttg gctgaccaag
3961 cctccaaggc caacctgatg tttgaagagg gaaagaacat gactccagtc tacacaggtg
4021 cacttaaaga tgagttggta aagaccgata aagtttatgg taaggtcaag aagaggcttc
4081 tatggggttc agatctggcg accatgatac ggtgcgcccg agcttttgga ggcctcatgg
4141 atgaactcaa ggcacactgt gtcacactcc ctgtcagagt tggtatgaac atgaatgagg
4201 atggccccat catcttcgag aagcactcca gatatagata tcattatgat gctgactatt
4261 cccggtggga ctcaacacaa caaagggatg tgctagcagc agcactagaa atcatggtta
4321 agttctctcc agaaccacac ctggcccaga tagttgcaga agacctcctt tcccctagcg
4381 tgatggatgt gggtgacttt caaatatcaa taagtgaggg tctcccctct ggggtgcctt
4441 gcacctctca gtggaattcc atcgcccact ggctcctcac tctgtgtgca ctctctgaag
4501 tcacggacct gtcccctgac atcattcagg ccaactccct tttctccttc tatggtgatg
4561 atgagattgt aagcacagac ataaagttgg acccagagag gctaacagca aaactcaagg
4621 agtacgggct gaaaccaacc cgccccgaca aaactgaagg acccctcgtc atctctgaag
4681 acctggatgg tctgacattc ctccggagaa ctgtgacccg tgatccagct ggctggtttg
4741 gaaaattgga acaaagttca attcttaggc aaatgtactg gaccaggggt cccaaccatg
4801 aagacccatt tgaaacaatg ataccacact cccaaagacc catacaattg atgtccttgc
4861 tgggcgaggc tgcactccac ggcccggcat tctacagcaa aatcagcaaa ttagtcattg
4921 cagagttgaa ggaaggtggc atggattttt acgtacccag acaagagcca atgttcaggt
4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg
5041 tgaatgaaga tggcgtcgag tgacgtcaac ccatctgatg ggtccgcagc caacctcgtc
5101 ccagaggtca acaatgaggt tatggctctg gagcccgttg ttggtgccgc cattgcggca
5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc
5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatact atggagcgcg
5281 cccttgggcc ctgatctaaa tccctacttg tctcatttgg ccagaatgta caatggttat
5341 gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc
5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact
5461 atgttccccc atatagtagt agatgttagg caactagaac ctgtgttgat tcccttaccc
5521 gatgttagga ataatttcta tcattataat caatcaaatg atcccaccat caagttgata
5581 gcaatgttgt atacaccact tagggctaat aatgctgggg atgatgtctt cacagtctct
5641 tgccgagtcc tcacgagacc atcccccgat tttgacttca tatttctagt gccacccaca
5701 gttgagtcaa gaactaaacc attctctgtc ccagttttaa ctgttgagga gatgaccaat
5761 tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtc
5821 caaccacaaa acggtaggtg cacgactgat ggcgtgctcc taggcaccac ccaactgtct
5881 cctgtcaaca tctgcacctt tagaggagat gtcacccata tcacaggtag tcataactat
5941 acaatgaatt tggcttctca aaattggagt aactacgacc caacagaaga aatcccagcc
6001 cctctaggga ctccagactt tgtggggaag attcaaggca tgcttaccca aaccacaagg
6061 acagatggct caacacgcgg ccacaaagcc acagtgtaca ctgggagcgc cgactttgct
6121 ccaaaactgg gtagagttca atttgaaact gacacaaaca atgattttga agctaaccaa
6181 aacacaaagt tcaccccagt tggtgtcatc caagatggtg gcaccaccca tcgaaatgaa
6241 ccccaacagt gggtactccc aagttactca ggcaggaaca ctcctaatgt gcatctggcc
6301 cccgctgtgg cccccacttt tccgggtgag caactcctct tctttagatc caccatgccc
6361 ggatgcagcg ggtaccccaa catggatttg gattgtctgc tcccccagga atgggtgcag
6421 tacttctacc aggaggcagc cccagcacaa tctgatgtgg ctctgctaag atttgtgaat
6481 ccagacacag gtagggtttt gtttgaatgt aagcttcata aatcaggcta tgttacagtg
6541 gctcacactg gccaacatga tttggttatc ccccccaatg gttattttag gtttgattcc
6601 tgggtcaacc agttttacac gcttgccccc atgggaaatg gagcggggcg tagacgtgca
6661 ctataatggc tggagctttc tttgctggat tggcatctga tgtccttggc tctggacttg
6721 gttcccttat caatgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca
6781 gaaaattgca acaagcatcc ttccaattta gcagcaatct acaacaggct tcctttcaac
6841 atgacaaaga gatgctccaa gcacaaattg aggctaccaa aaggttacaa caggaaatga
6901 tgaaagttaa gcaggcaatg ctcctagagg gtgggttctc tgagacagat gcagcccgcg
6961 gggcaatcaa cgcccctatg acaaaagcct tggactggag cgggacaagg tactgggctc
7021 ctgatgctag gactacaaca tacaatgcag gccgcttttc caccccccaa ccatcagggg
7081 cgctgccagg aagagctaat tttagggatg ctgtccctgc tcggggttcc tctagtaagt
7141 cttctaattc ttctactgct acttctgtgt attcaaatca aactacttca acgagacttg
7201 gttctacagc tggttctggt accagtgtct cgagcttccc gtcaactgca aggactagga
7261 gctgggttga ggaccaaagt aggaatttgt cacctttcat gaggggggcc cacaacatat
7321 cgtttgtcac cccaccatct agcaggtcct ctagccaagg cacagtctca accgtgccta
7381 aagagatttt ggactcctgg actggcgctt tcaacacgcg caggcagcca ctctt
//