Typing tool
|
Complete norovirus genomes
OM372485 | GII.4 Sydney | ||
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GII.P31 |
ORF1: 1..5063 ORF2: 5044..6666 ORF3: 6666..7435LOCUS OM372485 7435 bp RNA linear VRL 30-JAN-2022 DEFINITION Norovirus GII isolate FS560 nonstructural polyprotein (ORF1) gene, partial cds; VP1 (ORF2) gene, complete cds; and VP2 (ORF3) gene, partial cds. ACCESSION OM372485 VERSION OM372485.1 KEYWORDS . SOURCE Norovirus GII ORGANISM Norovirus GII Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Caliciviridae; Norovirus; Norwalk virus. REFERENCE 1 (bases 1 to 7435) AUTHORS Wang,J. TITLE Epidemiological characteristics of Human Caliciviruse infection in in Children presenting with Acute Gastroenteritis (AGE) in Beijing, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 7435) AUTHORS Wang,J. TITLE Direct Submission JOURNAL Submitted (25-JAN-2022) microbiology lab, China national center for food safety risk assessment, Panjiayuan Nanli No. 7, Beijing, Beijing 100021, China COMMENT ##Assembly-Data-START## Assembly Method :: ABySS v. 2.1.0 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7435 /organism="Norovirus GII" /mol_type="genomic RNA" /isolate="FS560" /isolation_source="feces" /host="Homo sapiens" /db_xref="taxon:122929" /country="China" /collection_date="Feb-2019" /note="genotype: GII" gene <1..5063 /gene="ORF1" CDS <1..5063 /gene="ORF1" /codon_start=3 /product="nonstructural polyprotein" /protein_id="UJP29358.1" /translation="ANSNNDIAKSSSDGVFSNMAVTFKRALGARPKQPPPKEIPPRPP RPPTPELVKKIPPPPPNGEDELVVSYNAKDGVSGLPELTTVRQPEETNTAFSVPPLNQ RESRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLAKVELAPLSLFW RPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWLSRRMIQRTTGF FRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLKPLNILNILATC DWTFAGVVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPEDLAVELVPIVMGGI GLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKKEEANELAMVRS IEDAVLDLEAIENNHMTTLLKDKDSLTTYMRTLDLEEEKARKLSTKSASPDIVGTINS LLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLARELAKKIAASLTGDQR VGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPLTLNCDRIENKG KVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAKRDFPGQPDMWK NAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASGLLHERLDEYEL QGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMSDLKQALKNIAIK KCQIVYNGGTYTLEADGKGSVKVDKVQSATVQTNNELAGTLHHLRCARIRYYVKCVQE ALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDTEEMANKDGCLKPKDDEEFVVSS DDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKYSIEEYLQDRDR YYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTGSEIRKRNPEDF KPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSLFITSTHVIPQG AKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTVATLLIKRPTGE LMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCGCPYIYKRGNDY VVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILGPGSAPKLSTKTKF WRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRGKPPRPNVLEAA KKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNGESFTGKLADQA SKANLMFEEGKNMTPVYTGALKDELVKTDKVYGKVKKRLLWGSDLATMIRCARAFGGL MDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDSTQQRDVLAAALE IMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQWNSIAHWLLTL CALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPERLTAKLKEYGLKPTRPDKTE GPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNHEDPFETMIPHS QRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPMFRWMRFSDLST WEGDRNLAPSFVNEDGVE" mat_peptide <1..953 /gene="ORF1" /product="p48" mat_peptide 954..2051 /gene="ORF1" /product="NTPase" mat_peptide 2052..2588 /gene="ORF1" /product="p22" mat_peptide 2589..2987 /gene="ORF1" /product="VPg" mat_peptide 2988..3530 /gene="ORF1" /product="Pro" mat_peptide 3531..5060 /gene="ORF1" /product="RdRp" gene 5044..6666 /gene="ORF2" CDS 5044..6666 /gene="ORF2" /note="major capsid protein" /codon_start=1 /product="VP1" /protein_id="UJP29359.1" /translation="MKMASSDVNPSDGSAANLVPEVNNEVMALEPVVGAAIAAPVAGQ QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG FEVQVILAGNAFTAGKVIFAAVPPNFPTEGLSPSQVTMFPHIVVDVRQLEPVLIPLPD VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT QLSPVNICTFRGDVTHITGSHNYTMNLASQNWSNYDPTEEIPAPLGTPDFVGKIQGML TQTTRTDGSTRGHKATVYTGSADFAPKLGRVQFETDTNNDFEANQNTKFTPVGVIQDG GTTHRNEPQQWVLPSYSGRNTPNVHLAPAVAPTFPGEQLLFFRSTMPGCSGYPNMDLD CLLPQEWVQYFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV IPPNGYFRFDSWVNQFYTLAPMGNGAGRRRAL" gene 6666..>7435 /gene="ORF3" CDS 6666..>7435 /gene="ORF3" /note="minor structural protein; small basic protein" /codon_start=1 /product="VP2" /protein_id="UJP29360.1" /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA SFQFSSNLQQASFQHDKEMLQAQIEATKRLQQEMMKVKQAMLLEGGFSETDAARGAIN APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRANFRDAVPARGSSSKSS NSSTATSVYSNQTTSTRLGSTAGSGTSVSSFPSTARTRSWVEDQSRNLSPFMRGAHNI SFVTPPSSRSSSQGTVSTVPKEILDSWTGAFNTRRQPL" ORIGIN 1 ttgccaacag caacaacgac atcgcaaaat cttcaagtga cggtgtgttt tctaacatgg 61 ctgtcacttt taagcgggcc ctcggggcgc ggcctaaaca gccgcccccg aaggaaatac 121 cacccagacc cccgcgacca cccacaccag aattggtcaa aaagatccct cctcccccac 181 ccaacgggga ggatgaacta gtggtctctt acaacgccaa agatggcgtt tccggactgc 241 ctgagctcac cactgtcaga caaccggaag aaaccaacac ggcgttcagt gtccccccac 301 tcaaccaaag ggagagcagg gacgccaagg agccactaac tgggacaatc attgaaatgt 361 gggatggaga aatctaccat tacggcctgt acgtggaacg aggtcttata cttggtgtgc 421 acaagccacc agcagccatc agcctcgcta aggtcgagct ggcaccactc tctttgttct 481 ggagacctgt atacaccccc cagtacctta tctctccaga cactcttagg agattacatg 541 gagagtcatt cccctacact gcatttgaca acaattgcta cgccttttgt tgttgggtat 601 tagacctaaa cgactcatgg ctaagcagga gaatgattca gagaacaaca ggcttcttta 661 ggccgtacca ggattggaac aggaaacccc tccccactat ggatgattcc aaattaaaga 721 aggtagccaa catatttttg tgcactttgt cttcactatt caccaggccc atcaaggaca 781 taatagggaa gttgaaacct ctcaacatcc ttaatattct ggctacatgt gattggacct 841 tcgcaggcgt agtggaatcc ttaatactct tggcagaact ctttggagtt ttctggacac 901 ccccagatgt gtctgcgatg atcgccccct tgctaggtga ttatgaactg caaggacccg 961 aggaccttgc agtggaactg gtcccaatag tgatgggagg gataggtttg gttctaggat 1021 ttaccaaaga gaagatcgga aagatgctgt catcagctgc atccacttta agagcttgta 1081 aagaccttgg tgcatacgga ctggaaatct taaaattggt catgaagtgg ttcttcccaa 1141 agaaagagga agcaaatgaa ctggctatgg tgagatccat cgaggatgca gtactagacc 1201 tcgaggcaat tgaaaacaac cacatgacca ccctgctcaa agacaaagac agcttgacaa 1261 cctacatgag aacccttgac cttgaggagg agaaagccag aaaactctca accaaatctg 1321 cttcacccga tattgtgggc acaatcaact ctcttctggc aagaatcgct gctgcacgct 1381 ccctagtgca tcgggcgaaa gaagagctct ccagcaggcc gagacctgtc gttgtaatga 1441 tatcgggaag accagggata gggaaaactc accttgccag ggagctggcc aagaagatcg 1501 cggcctccct cacaggggac cagcgtgtgg gccttatccc acgcaatggt gtcgaccact 1561 gggacgcata taagggcgaa agggttgtcc tatgggacga ctatggaatg agcaacccca 1621 tccatgatgc ccttaggttg caggagcttg ctgacacttg ccccctcacg ctaaattgtg 1681 acagaattga gaacaaagga aaagtctttg acagtgacgc cataattatc accaccaacc 1741 tggccaaccc agcaccactg gattatgtca actttgaagc gtgctcgaga cgcattgatt 1801 tcctcgtgta cgcagaagcc cctgaggtgg agaaggcaaa gcgcgacttc ccaggtcaac 1861 ctgacatgtg gaagaacgct ttcagtcctg acttctcaca cataaaactg tcattggctc 1921 cacagggtgg ttttgacaag aacggcaaca ccccgcatgg aaaaggggtc atgaagaccc 1981 tcaccactgg ctccctcatc gcccgagcat cagggttact ccatgagagg ctagatgaat 2041 atgaattgca aggcccagcc ctcaccactt tcaactttga ccgcaacaag atacttgctt 2101 ttagacagct cgctgctgaa aacaagtatg ggctgatgga cacaatgaga gttggaaaac 2161 agctcaagga tgtcaagact atgtcagacc tcaaacaggc actcaagaac atcgcgatca 2221 agaagtgcca gatagtgtac aatggtggca cctatacact tgaggctgat ggcaagggca 2281 gtgtgaaagt tgacaaagtg caaagtgcca ctgtgcagac caacaatgaa ctagccggta 2341 ccctacacca cctaagatgc gctagaatca gatactatgt taagtgcgtc caggaggcac 2401 tgtattccat catccaaatc gctggggctg cattcgtcac cacgcgcatc gctaagcgca 2461 tgaatataca gaatctctgg tccaagccac aggtggaaga cacagaagag atggccaaca 2521 aagacggttg cctaaaaccc aaagatgatg aagagtttgt cgtttcatcc gacgacatca 2581 aaactgaggg caagaaaggg aagaacaagt ccggccgcgg caagaagcac acagcctttt 2641 caagtaaagg gctcagtgat gaggagtatg atgagtacaa gagaatcaga gaagaaagga 2701 atggtaagta ctccatagaa gagtaccttc aggacagaga caggtactac gaggaggtgg 2761 ccattgccag ggcaaccgaa gaggacttct gtgaggagga ggaggccaaa atccggcaga 2821 ggattttcag accaacaagg aaacaacgca aagaagagag ggcttctctc ggcttggtca 2881 caggctctga aatcaggaag agaaacccag aagacttcaa acctaaggga aagctgtggg 2941 ctgatgacga cagaagtgtt gactacaatg agaaactcaa ctttgaggcc ccaccaagca 3001 tctggtcgcg gatagtcaac tttggttcag gctggggctt ctgggtctcc cccagtctgt 3061 ttataacatc aacccatgtc ataccccaag gtgcaaagga gttcttcgga gtccctatca 3121 agcaaatcca gatacacaag tcaggtgaat tctgccgatt gagattccca aagccaatca 3181 gaaccgatgt gacgggcatg attctagaag aaggtgcgcc cgaggggacc gtggccacac 3241 tgctcatcaa gagaccaact ggagagctca tgcctctggc agccagaatg gggacccatg 3301 caaccatgaa aattcagggg cgcacagttg gagggcaaat gggtatgctc ctgacaggat 3361 ccaacgccaa gagtatggac ctaggcacaa caccaggcga ctgcggctgc ccctacatct 3421 acaagagggg gaatgactac gtggtcatag gggtccatac ggctgctgcc cgtggaggaa 3481 acactgtcat atgtgccacc cagggaagtg agggagaggc cacacttgaa ggaggtgaca 3541 gtaaagggac atactgtggc gcaccaatct tgggcccagg gagcgctccg aagctcagca 3601 ccaagaccaa gttttggaga tcatccacaa caccactccc acctggcacc tacgaaccag 3661 cctacctcgg tggcaaagac cctagagtca aaggtggccc ttcattgcaa caagttatga 3721 gggaccagct gaagccattc acagaaccca gaggcaaacc accaagacca aatgtgttgg 3781 aagctgccaa gaaaaccatc atcaatgtcc ttgagcaaac aattgatcca ccccaaaaat 3841 ggtcatttgc gcaagcttgc gcatcccttg acaaaaccac ctccagcggc cacccgcacc 3901 acatgcggaa aaacgactgt tggaatgggg agtccttcac aggaaagttg gctgaccaag 3961 cctccaaggc caacctgatg tttgaagagg gaaagaacat gactccagtc tacacaggtg 4021 cacttaaaga tgagttggta aagaccgata aagtttatgg taaggtcaag aagaggcttc 4081 tatggggttc agatctggcg accatgatac ggtgcgcccg agcttttgga ggcctcatgg 4141 atgaactcaa ggcacactgt gtcacactcc ctgtcagagt tggtatgaac atgaatgagg 4201 atggccccat catcttcgag aagcactcca gatatagata tcattatgat gctgactatt 4261 cccggtggga ctcaacacaa caaagggatg tgctagcagc agcactagaa atcatggtta 4321 agttctctcc agaaccacac ctggcccaga tagttgcaga agacctcctt tcccctagcg 4381 tgatggatgt gggtgacttt caaatatcaa taagtgaggg tctcccctct ggggtgcctt 4441 gcacctctca gtggaattcc atcgcccact ggctcctcac tctgtgtgca ctctctgaag 4501 tcacggacct gtcccctgac atcattcagg ccaactccct tttctccttc tatggtgatg 4561 atgagattgt aagcacagac ataaagttgg acccagagag gctaacagca aaactcaagg 4621 agtacgggct gaaaccaacc cgccccgaca aaactgaagg acccctcgtc atctctgaag 4681 acctggatgg tctgacattc ctccggagaa ctgtgacccg tgatccagct ggctggtttg 4741 gaaaattgga acaaagttca attcttaggc aaatgtactg gaccaggggt cccaaccatg 4801 aagacccatt tgaaacaatg ataccacact cccaaagacc catacaattg atgtccttgc 4861 tgggcgaggc tgcactccac ggcccggcat tctacagcaa aatcagcaaa ttagtcattg 4921 cagagttgaa ggaaggtggc atggattttt acgtacccag acaagagcca atgttcaggt 4981 ggatgagatt ctcagatctg agcacgtggg agggcgatcg caatctggct cccagttttg 5041 tgaatgaaga tggcgtcgag tgacgtcaac ccatctgatg ggtccgcagc caacctcgtc 5101 ccagaggtca acaatgaggt tatggctctg gagcccgttg ttggtgccgc cattgcggca 5161 cctgtagcgg gccaacaaaa tgtaattgac ccctggatta gaaacaattt tgtacaagcc 5221 cctggtggag agtttacagt atcccctaga aacgctccag gtgaaatact atggagcgcg 5281 cccttgggcc ctgatctaaa tccctacttg tctcatttgg ccagaatgta caatggttat 5341 gcaggtggtt ttgaagtgca ggtaattctc gcggggaacg cgttcaccgc cgggaaggtc 5401 atatttgcag cagtcccacc aaatttccca actgaaggct tgagccccag ccaggtcact 5461 atgttccccc atatagtagt agatgttagg caactagaac ctgtgttgat tcccttaccc 5521 gatgttagga ataatttcta tcattataat caatcaaatg atcccaccat caagttgata 5581 gcaatgttgt atacaccact tagggctaat aatgctgggg atgatgtctt cacagtctct 5641 tgccgagtcc tcacgagacc atcccccgat tttgacttca tatttctagt gccacccaca 5701 gttgagtcaa gaactaaacc attctctgtc ccagttttaa ctgttgagga gatgaccaat 5761 tcaagattcc ccattccttt ggaaaagttg ttcacgggtc ccagcagtgc ctttgttgtc 5821 caaccacaaa acggtaggtg cacgactgat ggcgtgctcc taggcaccac ccaactgtct 5881 cctgtcaaca tctgcacctt tagaggagat gtcacccata tcacaggtag tcataactat 5941 acaatgaatt tggcttctca aaattggagt aactacgacc caacagaaga aatcccagcc 6001 cctctaggga ctccagactt tgtggggaag attcaaggca tgcttaccca aaccacaagg 6061 acagatggct caacacgcgg ccacaaagcc acagtgtaca ctgggagcgc cgactttgct 6121 ccaaaactgg gtagagttca atttgaaact gacacaaaca atgattttga agctaaccaa 6181 aacacaaagt tcaccccagt tggtgtcatc caagatggtg gcaccaccca tcgaaatgaa 6241 ccccaacagt gggtactccc aagttactca ggcaggaaca ctcctaatgt gcatctggcc 6301 cccgctgtgg cccccacttt tccgggtgag caactcctct tctttagatc caccatgccc 6361 ggatgcagcg ggtaccccaa catggatttg gattgtctgc tcccccagga atgggtgcag 6421 tacttctacc aggaggcagc cccagcacaa tctgatgtgg ctctgctaag atttgtgaat 6481 ccagacacag gtagggtttt gtttgaatgt aagcttcata aatcaggcta tgttacagtg 6541 gctcacactg gccaacatga tttggttatc ccccccaatg gttattttag gtttgattcc 6601 tgggtcaacc agttttacac gcttgccccc atgggaaatg gagcggggcg tagacgtgca 6661 ctataatggc tggagctttc tttgctggat tggcatctga tgtccttggc tctggacttg 6721 gttcccttat caatgctggg gctggggcca tcaaccaaaa agttgagttt gaaaataaca 6781 gaaaattgca acaagcatcc ttccaattta gcagcaatct acaacaggct tcctttcaac 6841 atgacaaaga gatgctccaa gcacaaattg aggctaccaa aaggttacaa caggaaatga 6901 tgaaagttaa gcaggcaatg ctcctagagg gtgggttctc tgagacagat gcagcccgcg 6961 gggcaatcaa cgcccctatg acaaaagcct tggactggag cgggacaagg tactgggctc 7021 ctgatgctag gactacaaca tacaatgcag gccgcttttc caccccccaa ccatcagggg 7081 cgctgccagg aagagctaat tttagggatg ctgtccctgc tcggggttcc tctagtaagt 7141 cttctaattc ttctactgct acttctgtgt attcaaatca aactacttca acgagacttg 7201 gttctacagc tggttctggt accagtgtct cgagcttccc gtcaactgca aggactagga 7261 gctgggttga ggaccaaagt aggaatttgt cacctttcat gaggggggcc cacaacatat 7321 cgtttgtcac cccaccatct agcaggtcct ctagccaagg cacagtctca accgtgccta 7381 aagagatttt ggactcctgg actggcgctt tcaacacgcg caggcagcca ctctt //